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Lsi06G013510 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G013510
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranscription initiation factor IIE subunit alpha
Genome locationchr06:24114364..24117535
RNA-Seq ExpressionLsi06G013510
SyntenyLsi06G013510
Gene Ontology termsGO:0001113 - transcriptional open complex formation at RNA polymerase II promoter (biological process)
GO:0005673 - transcription factor TFIIE complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK28395.1 general transcription factor IIE subunit 1 [Cucumis melo var. makuwa]6.4e-3593.68Show/hide
Query:  YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREE-DEDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE
        YYAAILKKQQELEEAAKGQQELSSTEVTE+VANTNSSRQVGMKAKREE D+DDDIEWEEAPIGGNANEN+KV DLNVEASA VEDEEEDDVDWEE
Subjt:  YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREE-DEDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE

XP_004138223.2 general transcription factor IIE subunit 1 [Cucumis sativus]1.1e-3492.71Show/hide
Query:  YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREEDEDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDEEE--DDVDWEE
        YYAAILKKQQELEEAAKGQQELSSTEVTE+VANTNSSRQVGMKAKREEDEDDDIEWEEAPIGGNANEN+KV DLNVEASA VE+EEE  DDVDWEE
Subjt:  YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREEDEDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDEEE--DDVDWEE

XP_008453364.1 PREDICTED: general transcription factor IIE subunit 1 [Cucumis melo]1.9e-3492.63Show/hide
Query:  YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREE-DEDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE
        YYAAILKKQQELEEAAKGQQELSSTEVTE+VANTNSSR+VGMKAKREE D+DDDIEWEEAPIGGNANEN+KV DLNVEASA VEDEEEDDVDWEE
Subjt:  YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREE-DEDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE

XP_023515738.1 general transcription factor IIE subunit 1-like [Cucurbita pepo subsp. pepo]2.9e-3591.58Show/hide
Query:  YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREE-DEDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE
        YYAAILKKQQELEEAAKGQ+ELSSTEVTEN++ TNSSRQVGMKAKREE DE+DDIEWEEAPI GNANEN+KVGDLNVEASASVEDEEEDDVDWEE
Subjt:  YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREE-DEDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE

XP_038880289.1 general transcription factor IIE subunit 1 isoform X1 [Benincasa hispida]7.6e-3693.62Show/hide
Query:  YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREEDEDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE
        YYAAILKKQQELEEAAKGQ+EL STEVTENVAN NSSRQVGMKAKREEDE+DDIEWEEAPIGGNANEN+KV DLNVEASASVEDEEEDDVDWEE
Subjt:  YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREEDEDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE

TrEMBL top hitse value%identityAlignment
A0A0A0LSL9 Transcription initiation factor IIE subunit alpha5.3e-3592.71Show/hide
Query:  YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREEDEDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDEEE--DDVDWEE
        YYAAILKKQQELEEAAKGQQELSSTEVTE+VANTNSSRQVGMKAKREEDEDDDIEWEEAPIGGNANEN+KV DLNVEASA VE+EEE  DDVDWEE
Subjt:  YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREEDEDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDEEE--DDVDWEE

A0A1S3BW39 Transcription initiation factor IIE subunit alpha9.0e-3592.63Show/hide
Query:  YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREE-DEDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE
        YYAAILKKQQELEEAAKGQQELSSTEVTE+VANTNSSR+VGMKAKREE D+DDDIEWEEAPIGGNANEN+KV DLNVEASA VEDEEEDDVDWEE
Subjt:  YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREE-DEDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE

A0A5A7UX12 Transcription initiation factor IIE subunit alpha9.0e-3592.63Show/hide
Query:  YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREE-DEDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE
        YYAAILKKQQELEEAAKGQQELSSTEVTE+VANTNSSR+VGMKAKREE D+DDDIEWEEAPIGGNANEN+KV DLNVEASA VEDEEEDDVDWEE
Subjt:  YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREE-DEDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE

A0A5D3DYI4 Transcription initiation factor IIE subunit alpha3.1e-3593.68Show/hide
Query:  YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREE-DEDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE
        YYAAILKKQQELEEAAKGQQELSSTEVTE+VANTNSSRQVGMKAKREE D+DDDIEWEEAPIGGNANEN+KV DLNVEASA VEDEEEDDVDWEE
Subjt:  YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREE-DEDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE

A0A6J1E5J2 Transcription initiation factor IIE subunit alpha9.0e-3590.53Show/hide
Query:  YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREED-EDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE
        YYAAILKKQQELEEAAK Q+ELSSTEVTEN++ TNSSRQVGMKAKREED E+DDIEWEEAPI GNANEN+KVGDLNVEASASVEDEEEDDVDWEE
Subjt:  YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREED-EDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G03280.1 Transcription factor TFIIE, alpha subunit1.1e-1355.88Show/hide
Query:  YYAAILKKQQELEEAAKGQQELSSTEVTENV--ANTNSSRQVGMKAKREEDEDDD---IEWEE-APIGGNANENFKVGDLNVEASAS--VEDEEEDDVDW
        YYA ++K+Q   E AA+  Q+ S+ E T  +      S RQV MKAKREEDED+D   +EWEE AP+   AN N+KV DLNVEA AS   E+EEEDDVDW
Subjt:  YYAAILKKQQELEEAAKGQQELSSTEVTENV--ANTNSSRQVGMKAKREEDEDDD---IEWEE-APIGGNANENFKVGDLNVEASAS--VEDEEEDDVDW

Query:  EE
        EE
Subjt:  EE

AT4G20340.1 Transcription factor TFIIE, alpha subunit1.2e-1048.45Show/hide
Query:  YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREEDEDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDE---EEDDVDWEE
        YYAAI+++Q+   +  + +    ST      A T S RQVGMK+KREE E++D+EWEE      AN N+KV DLNVEA  + E E   E+DD+DWEE
Subjt:  YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREEDEDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDE---EEDDVDWEE

AT4G20810.1 transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein6.4e-0946.81Show/hide
Query:  YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREEDEDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE
        YYAAIL ++QEL E    Q+          +A ++S RQVGMK+KREE+E+     EEA +   AN N+KV DLNVEA  +  +++E+DVDW+E
Subjt:  YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREEDEDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTATTATGCTGCTATACTGAAGAAGCAACAAGAGCTTGAAGAAGCTGCTAAGGGACAGCAGGAATTATCCAGTACAGAGGTTACTGAAAACGTGGCTAACACAAA
TTCCAGTCGCCAGGTGGGAATGAAGGCAAAACGTGAAGAGGATGAAGATGATGATATTGAGTGGGAGGAGGCTCCAATAGGTGGCAATGCAAATGAAAATTTCAAGGTTG
GTGATTTGAATGTTGAAGCATCAGCTTCGGTAGAAGATGAAGAAGAAGATGATGTGGATTGGGAGGAAGATTGCAGCAGCGTGGAATTTAGAAGGCGTGCAAGTGAATTG
CTCATTAAACAGAGAATGAAATGGAAATCAGAGCAAAGCAAGTCAAACGAAAAATCATGTGAGATGAGAAATTACGACTTCTCTAGCTGCAGCATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTTATTATGCTGCTATACTGAAGAAGCAACAAGAGCTTGAAGAAGCTGCTAAGGGACAGCAGGAATTATCCAGTACAGAGGTTACTGAAAACGTGGCTAACACAAA
TTCCAGTCGCCAGGTGGGAATGAAGGCAAAACGTGAAGAGGATGAAGATGATGATATTGAGTGGGAGGAGGCTCCAATAGGTGGCAATGCAAATGAAAATTTCAAGGTTG
GTGATTTGAATGTTGAAGCATCAGCTTCGGTAGAAGATGAAGAAGAAGATGATGTGGATTGGGAGGAAGATTGCAGCAGCGTGGAATTTAGAAGGCGTGCAAGTGAATTG
CTCATTAAACAGAGAATGAAATGGAAATCAGAGCAAAGCAAGTCAAACGAAAAATCATGTGAGATGAGAAATTACGACTTCTCTAGCTGCAGCATTTGA
Protein sequenceShow/hide protein sequence
MTYYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREEDEDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDEEEDDVDWEEDCSSVEFRRRASEL
LIKQRMKWKSEQSKSNEKSCEMRNYDFSSCSI