; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi06G013540 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G013540
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTransmembrane protein
Genome locationchr06:24127409..24127885
RNA-Seq ExpressionLsi06G013540
SyntenyLsi06G013540
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN63795.1 hypothetical protein Csa_013677 [Cucumis sativus]1.7e-6078.88Show/hide
Query:  MVFSTLESPPTSDSGTAAKIPSTGLLRSVTALAFLCAKKAALVTKKLKLKPSHDQPSHASPRSPLACPKKMLKTISQSTMNLVQKKKTGR---REEEEDE
        M+FST + PPT DSG  AK PSTGL  SV ALA LCAKKAAL+TKKLK KPS D PSH SPRSPLA PKKMLKTISQS M+LV KK+TGR    EEEE+E
Subjt:  MVFSTLESPPTSDSGTAAKIPSTGLLRSVTALAFLCAKKAALVTKKLKLKPSHDQPSHASPRSPLACPKKMLKTISQSTMNLVQKKKTGR---REEEEDE

Query:  EEEWGQGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLPGYLLKKPQP
        EE+WGQGGVWQRGILMGDKCQPL+FSGAIYYDSNG KM++PPLRSPRASPLPGYLL+K QP
Subjt:  EEEWGQGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLPGYLLKKPQP

TYK28394.1 hypothetical protein E5676_scaffold629G00220 [Cucumis melo var. makuwa]2.1e-5876.97Show/hide
Query:  MVFSTLESPPTSDSGTAAKIPSTGLLRSVTALAFLCAKKAALVTKKLKLKPSHDQPSHASPRSPLACPKKMLKTISQSTMNLVQKKKTGRREEEEDEEEE
        M+FST E PPT  SG +A  PSTGL RS+TALA LCAKKAAL+TKKLK KPS D   H SPRSPLA PKKMLKTISQS MNLV KK+TGR+EEEE+EEEE
Subjt:  MVFSTLESPPTSDSGTAAKIPSTGLLRSVTALAFLCAKKAALVTKKLKLKPSHDQPSHASPRSPLACPKKMLKTISQSTMNLVQKKKTGRREEEEDEEEE

Query:  -------WGQGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLPGYLLKKPQP
               WGQGGVWQRGILMGDKCQPL+FSGAIYYDSNG+KM++PPLRSPRASPLPGYLL+K QP
Subjt:  -------WGQGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLPGYLLKKPQP

XP_022973902.1 uncharacterized protein LOC111472519 [Cucurbita maxima]5.1e-4162.35Show/hide
Query:  MVFSTLESPPTSDSGTAAKIPSTGLLRSVTALAFLCAKKAALVTKKLKLKPSHDQPSHASPRSPLACPKKMLKTISQSTMNLVQKKKTGRR-----EEEE
        M   T E PP ++S T      TGLLRSV  L  LCAKKAA +TKKLK KP        SP + LA PK MLKTIS S M L +KKKT RR     EE++
Subjt:  MVFSTLESPPTSDSGTAAKIPSTGLLRSVTALAFLCAKKAALVTKKLKLKPSHDQPSHASPRSPLACPKKMLKTISQSTMNLVQKKKTGRR-----EEEE

Query:  DEEEEWGQGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLPGYLLKKPQ
        +EE+EWG+ GVWQRGILMGDKCQPL+F G IYYDSNGNK+N+ P RSPRASPLPGYLL+KP+
Subjt:  DEEEEWGQGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLPGYLLKKPQ

XP_023531310.1 uncharacterized protein LOC111793589 [Cucurbita pepo subsp. pepo]1.0e-4162.96Show/hide
Query:  MVFSTLESPPTSDSGTAAKIPSTGLLRSVTALAFLCAKKAALVTKKLKLKPSHDQPSHASPRSPLACPKKMLKTISQSTMNLVQKKKTGRR-----EEEE
        M  ST E PP ++S T      TGLLRSV  L  LCAKKAA VTKKLK KP        SP + LA PK MLKT+S S M L +KKKT RR     EE++
Subjt:  MVFSTLESPPTSDSGTAAKIPSTGLLRSVTALAFLCAKKAALVTKKLKLKPSHDQPSHASPRSPLACPKKMLKTISQSTMNLVQKKKTGRR-----EEEE

Query:  DEEEEWGQGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLPGYLLKKPQ
        +EE+EWG+ GVWQRGILMGDKCQPL+F G IYYDSNGNK+N+ P RSPRASPLPGYLL+KP+
Subjt:  DEEEEWGQGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLPGYLLKKPQ

XP_038879173.1 uncharacterized protein LOC120071149 [Benincasa hispida]1.4e-6787.9Show/hide
Query:  MVFSTLESPPTSDSGTAAKIPSTGLLRSVTALAFLCAKKAALVTKKLKLKPSHDQPSHASPRSPLACPKKMLKTISQSTMNLVQKKKTGRREEEED-EEE
        MVFST E+P T+DS TAAK PSTGL RSVTALA  CAKKAALVTKKLKLKPSH  PSH SP+SPLACPKKMLKTISQS M+LVQKKKTGRREEEED EEE
Subjt:  MVFSTLESPPTSDSGTAAKIPSTGLLRSVTALAFLCAKKAALVTKKLKLKPSHDQPSHASPRSPLACPKKMLKTISQSTMNLVQKKKTGRREEEED-EEE

Query:  EWGQGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLPGYLLKKP
        EWGQGGVWQRGILMGDKCQPL FSGAIYYDSNGNKMN+PPLRSPRASPLPGYLL+KP
Subjt:  EWGQGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLPGYLLKKP

TrEMBL top hitse value%identityAlignment
A0A0A0LPH9 Uncharacterized protein8.1e-6178.88Show/hide
Query:  MVFSTLESPPTSDSGTAAKIPSTGLLRSVTALAFLCAKKAALVTKKLKLKPSHDQPSHASPRSPLACPKKMLKTISQSTMNLVQKKKTGR---REEEEDE
        M+FST + PPT DSG  AK PSTGL  SV ALA LCAKKAAL+TKKLK KPS D PSH SPRSPLA PKKMLKTISQS M+LV KK+TGR    EEEE+E
Subjt:  MVFSTLESPPTSDSGTAAKIPSTGLLRSVTALAFLCAKKAALVTKKLKLKPSHDQPSHASPRSPLACPKKMLKTISQSTMNLVQKKKTGR---REEEEDE

Query:  EEEWGQGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLPGYLLKKPQP
        EE+WGQGGVWQRGILMGDKCQPL+FSGAIYYDSNG KM++PPLRSPRASPLPGYLL+K QP
Subjt:  EEEWGQGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLPGYLLKKPQP

A0A5D3DXW4 Uncharacterized protein1.0e-5876.97Show/hide
Query:  MVFSTLESPPTSDSGTAAKIPSTGLLRSVTALAFLCAKKAALVTKKLKLKPSHDQPSHASPRSPLACPKKMLKTISQSTMNLVQKKKTGRREEEEDEEEE
        M+FST E PPT  SG +A  PSTGL RS+TALA LCAKKAAL+TKKLK KPS D   H SPRSPLA PKKMLKTISQS MNLV KK+TGR+EEEE+EEEE
Subjt:  MVFSTLESPPTSDSGTAAKIPSTGLLRSVTALAFLCAKKAALVTKKLKLKPSHDQPSHASPRSPLACPKKMLKTISQSTMNLVQKKKTGRREEEEDEEEE

Query:  -------WGQGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLPGYLLKKPQP
               WGQGGVWQRGILMGDKCQPL+FSGAIYYDSNG+KM++PPLRSPRASPLPGYLL+K QP
Subjt:  -------WGQGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLPGYLLKKPQP

A0A6J1C108 uncharacterized protein LOC1110073693.6e-4063.23Show/hide
Query:  MVFSTLESPPTSDSGTAAKIPSTGLLRSVTALAFLCAKKAALVTKKLKLKPSHDQPSHASPRSPLACPKKMLKTISQSTMNLVQKKKTGRREEEEDEEEE
        M FST E  PT+DSG AAK PSTGLL S+TAL       AA +++KL+ K      +  SPRSPLA PK MLKTISQS + LV KKK+  +++ ++EEEE
Subjt:  MVFSTLESPPTSDSGTAAKIPSTGLLRSVTALAFLCAKKAALVTKKLKLKPSHDQPSHASPRSPLACPKKMLKTISQSTMNLVQKKKTGRREEEEDEEEE

Query:  WGQGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLPGYLLKK
        WG GGVWQR ILMGDKCQPL+FSGAIYYD+ GNKM++ P RSPRASPLP YLL K
Subjt:  WGQGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLPGYLLKK

A0A6J1EZ09 uncharacterized protein LOC1114408463.6e-4061.11Show/hide
Query:  MVFSTLESPPTSDSGTAAKIPSTGLLRSVTALAFLCAKKAALVTKKLKLKPSHDQPSHASPRSPLACPKKMLKTISQSTMNLVQKKKTGRR-----EEEE
        M  ST E PP ++S T      TGLLRSV  L  LCAKKAA VTKKLK KP        SP + LA PK +LKT+S S M L +KKKT RR      +++
Subjt:  MVFSTLESPPTSDSGTAAKIPSTGLLRSVTALAFLCAKKAALVTKKLKLKPSHDQPSHASPRSPLACPKKMLKTISQSTMNLVQKKKTGRR-----EEEE

Query:  DEEEEWGQGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLPGYLLKKPQ
        +EE+EWG+ GVWQRGILMGDKCQPL+F G IYYDSNGNK+N+ P RSPRASPLPGYLL+KP+
Subjt:  DEEEEWGQGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLPGYLLKKPQ

A0A6J1I8S7 uncharacterized protein LOC1114725192.5e-4162.35Show/hide
Query:  MVFSTLESPPTSDSGTAAKIPSTGLLRSVTALAFLCAKKAALVTKKLKLKPSHDQPSHASPRSPLACPKKMLKTISQSTMNLVQKKKTGRR-----EEEE
        M   T E PP ++S T      TGLLRSV  L  LCAKKAA +TKKLK KP        SP + LA PK MLKTIS S M L +KKKT RR     EE++
Subjt:  MVFSTLESPPTSDSGTAAKIPSTGLLRSVTALAFLCAKKAALVTKKLKLKPSHDQPSHASPRSPLACPKKMLKTISQSTMNLVQKKKTGRR-----EEEE

Query:  DEEEEWGQGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLPGYLLKKPQ
        +EE+EWG+ GVWQRGILMGDKCQPL+F G IYYDSNGNK+N+ P RSPRASPLPGYLL+KP+
Subjt:  DEEEEWGQGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLPGYLLKKPQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G49000.1 unknown protein8.4e-1838.51Show/hide
Query:  SPPTSDSGTAAKIPSTGLLRSVTALAFLCAKKAALVTKKLKLKPSHD-----------------QPSHASPRSPLACPKKMLKTISQSTMNLVQKKKTGR
        S P  +S  + K  S   L    ++  LCA+ A  ++KKLKLK                       S +SPR     PK++  T+S   M +V++K    
Subjt:  SPPTSDSGTAAKIPSTGLLRSVTALAFLCAKKAALVTKKLKLKPSHD-----------------QPSHASPRSPLACPKKMLKTISQSTMNLVQKKKTGR

Query:  REEEEDEEEEWGQGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLPGY
         +    EEE     G+WQR ILMG KC+PL+FSG IYYDSNG  +N+ P RSPR +PLP Y
Subjt:  REEEEDEEEEWGQGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLPGY

AT1G71740.1 unknown protein3.1e-0447.5Show/hide
Query:  QGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRS
        +G +WQ+ ILMG KCQ  +FSG I YD++G  +  PP ++
Subjt:  QGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRS

AT3G14760.1 unknown protein2.4e-0452.78Show/hide
Query:  VWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLR
        VWQR ILMG+KC+   FSG I YD  G+  + P L+
Subjt:  VWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLR

AT3G18560.1 unknown protein4.3e-1435.85Show/hide
Query:  VTALAFLCAKKAALVTKKLKLKPSHDQP---------------------------SHASPRSPLAC-PKKMLKTISQSTMNLVQK----------KKTGR
        + +L  LCA+ A+ V+KKLK K +  Q                            S A   SP+   PK++  T+S   M +V +          KKT  
Subjt:  VTALAFLCAKKAALVTKKLKLKPSHDQP---------------------------SHASPRSPLAC-PKKMLKTISQSTMNLVQK----------KKTGR

Query:  REEEEDEEEEWGQGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLP
            E++EEE+   GVWQR ILMG KC+PL++SG IYYD +G+++ + P RSPRAS +P
Subjt:  REEEEDEEEEWGQGGVWQRGILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTCTCCACTCTCGAATCTCCTCCCACCTCCGATTCCGGCACGGCGGCGAAGATCCCATCCACCGGCCTTCTCCGCTCTGTTACAGCTCTGGCCTTTCTCTGCGC
CAAAAAAGCTGCCCTAGTCACCAAGAAGCTTAAATTAAAGCCGAGTCACGACCAGCCGAGTCATGCGAGTCCGAGGTCGCCGTTGGCTTGCCCGAAGAAGATGCTGAAGA
CAATCAGCCAATCGACGATGAATTTGGTTCAGAAGAAAAAGACCGGCCGACGGGAGGAGGAGGAAGACGAAGAAGAAGAGTGGGGCCAAGGTGGGGTATGGCAAAGGGGG
ATCTTGATGGGCGACAAATGTCAACCGTTGAATTTTTCAGGTGCAATTTATTATGATAGTAACGGCAACAAGATGAACAAGCCCCCTCTCCGTTCGCCACGTGCCAGTCC
TTTACCCGGTTACCTCCTCAAGAAACCTCAACCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTCTCCACTCTCGAATCTCCTCCCACCTCCGATTCCGGCACGGCGGCGAAGATCCCATCCACCGGCCTTCTCCGCTCTGTTACAGCTCTGGCCTTTCTCTGCGC
CAAAAAAGCTGCCCTAGTCACCAAGAAGCTTAAATTAAAGCCGAGTCACGACCAGCCGAGTCATGCGAGTCCGAGGTCGCCGTTGGCTTGCCCGAAGAAGATGCTGAAGA
CAATCAGCCAATCGACGATGAATTTGGTTCAGAAGAAAAAGACCGGCCGACGGGAGGAGGAGGAAGACGAAGAAGAAGAGTGGGGCCAAGGTGGGGTATGGCAAAGGGGG
ATCTTGATGGGCGACAAATGTCAACCGTTGAATTTTTCAGGTGCAATTTATTATGATAGTAACGGCAACAAGATGAACAAGCCCCCTCTCCGTTCGCCACGTGCCAGTCC
TTTACCCGGTTACCTCCTCAAGAAACCTCAACCCTGA
Protein sequenceShow/hide protein sequence
MVFSTLESPPTSDSGTAAKIPSTGLLRSVTALAFLCAKKAALVTKKLKLKPSHDQPSHASPRSPLACPKKMLKTISQSTMNLVQKKKTGRREEEEDEEEEWGQGGVWQRG
ILMGDKCQPLNFSGAIYYDSNGNKMNKPPLRSPRASPLPGYLLKKPQP