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Lsi06G013760 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G013760
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptioncysteine-rich and transmembrane domain-containing protein B-like
Genome locationchr06:24350076..24350934
RNA-Seq ExpressionLsi06G013760
SyntenyLsi06G013760
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058026.1 hypothetical protein E6C27_scaffold274G003310 [Cucumis melo var. makuwa]1.3e-2182.54Show/hide
Query:  SCFDAADTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL
        SC D ADTGPGPY V PP CDPMQHGQ+QPYPPIVP QGETKS+TVPPS +TK RGDGFCRGL
Subjt:  SCFDAADTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL

KAE8652444.1 hypothetical protein Csa_013973 [Cucumis sativus]1.4e-2061.7Show/hide
Query:  LFPLRQLGSIKN-----LSCCYAIGVIVLVVSCFDAADTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL
        + PL  +G  K       S  Y  G +  V+   +  DTGPGPY VAPPMCDPMQHGQ+QPYPPIVP QGETKS+TVPPS +TK RGDGFCRGL
Subjt:  LFPLRQLGSIKN-----LSCCYAIGVIVLVVSCFDAADTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL

KAG6587617.1 hypothetical protein SDJN03_16182, partial [Cucurbita argyrosperma subsp. sororia]8.6e-1075.56Show/hide
Query:  MCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL
        MCDPMQHGQSQPY  I+P QGETK Q V P  ET S+GDGFCRGL
Subjt:  MCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL

KAG7021578.1 hypothetical protein SDJN02_15304 [Cucurbita argyrosperma subsp. argyrosperma]1.5e-1780.7Show/hide
Query:  DTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL
        DTGPGPYPVAPPMCDPMQHGQSQPY  I+P QGETK Q V P  ET S+GDGFCRGL
Subjt:  DTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL

XP_022969088.1 cysteine-rich and transmembrane domain-containing protein B-like [Cucurbita maxima]3.9e-1882.46Show/hide
Query:  DTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL
        DTGPGPYPVAPPMCDPMQHGQSQPY  I+P QGETKSQ V P  ET S+GDGFCRGL
Subjt:  DTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL

TrEMBL top hitse value%identityAlignment
A0A0A0LPD8 Uncharacterized protein6.9e-2161.7Show/hide
Query:  LFPLRQLGSIKN-----LSCCYAIGVIVLVVSCFDAADTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL
        + PL  +G  K       S  Y  G +  V+   +  DTGPGPY VAPPMCDPMQHGQ+QPYPPIVP QGETKS+TVPPS +TK RGDGFCRGL
Subjt:  LFPLRQLGSIKN-----LSCCYAIGVIVLVVSCFDAADTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL

A0A5A7UV38 Uncharacterized protein6.2e-2282.54Show/hide
Query:  SCFDAADTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL
        SC D ADTGPGPY V PP CDPMQHGQ+QPYPPIVP QGETKS+TVPPS +TK RGDGFCRGL
Subjt:  SCFDAADTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL

A0A6J1HZZ2 cysteine-rich and transmembrane domain-containing protein B-like1.9e-1882.46Show/hide
Query:  DTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL
        DTGPGPYPVAPPMCDPMQHGQSQPY  I+P QGETKSQ V P  ET S+GDGFCRGL
Subjt:  DTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGCGTCGCTCCTTCATTTGACTTCGTACATATTATTCCCCCTGAGGCAGTTGGGCAGTATTAAGAATTTATCTTGTTGTTATGCAATTGGAGTTATAGTATTGGT
GGTGTCTTGCTTTGATGCAGCAGATACTGGACCAGGTCCTTATCCAGTTGCCCCACCTATGTGTGATCCAATGCAACATGGTCAGTCTCAGCCATACCCTCCAATTGTAC
CTTCTCAAGGGGAAACCAAGTCTCAAACTGTACCTCCTTCAAGTGAAACCAAGTCTAGAGGTGATGGGTTTTGCAGAGGATTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGCGTCGCTCCTTCATTTGACTTCGTACATATTATTCCCCCTGAGGCAGTTGGGCAGTATTAAGAATTTATCTTGTTGTTATGCAATTGGAGTTATAGTATTGGT
GGTGTCTTGCTTTGATGCAGCAGATACTGGACCAGGTCCTTATCCAGTTGCCCCACCTATGTGTGATCCAATGCAACATGGTCAGTCTCAGCCATACCCTCCAATTGTAC
CTTCTCAAGGGGAAACCAAGTCTCAAACTGTACCTCCTTCAAGTGAAACCAAGTCTAGAGGTGATGGGTTTTGCAGAGGATTGTAA
Protein sequenceShow/hide protein sequence
MFASLLHLTSYILFPLRQLGSIKNLSCCYAIGVIVLVVSCFDAADTGPGPYPVAPPMCDPMQHGQSQPYPPIVPSQGETKSQTVPPSSETKSRGDGFCRGL