; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi06G014430 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G014430
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionHNH domain-containing protein
Genome locationchr06:24963033..24965771
RNA-Seq ExpressionLsi06G014430
SyntenyLsi06G014430
Gene Ontology termsGO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004519 - endonuclease activity (molecular function)
InterPro domainsIPR002711 - HNH endonuclease
IPR003615 - HNH nuclease


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138181.1 uncharacterized protein LOC101204599 [Cucumis sativus]9.7e-9795.51Show/hide
Query:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
        ME TSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
Subjt:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ

Query:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNED
        TRVNRFKS+K+DVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSE+LGQYKSKDRLAPCKLPYNE+
Subjt:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNED

XP_008453223.1 PREDICTED: uncharacterized protein LOC103494011 isoform X1 [Cucumis melo]7.5e-9794.57Show/hide
Query:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
        ME TSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
Subjt:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ

Query:  TRVNRFKSDKNDVDTSELKGYSCDVKFT----DKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
        TRVNRFKS+K+DVDTSELKGYSCDVKFT    DKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
Subjt:  TRVNRFKSDKNDVDTSELKGYSCDVKFT----DKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL

XP_008453224.1 PREDICTED: uncharacterized protein LOC103494011 isoform X2 [Cucumis melo]1.4e-9896.67Show/hide
Query:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
        ME TSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
Subjt:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ

Query:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
        TRVNRFKS+K+DVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
Subjt:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL

XP_022135260.1 uncharacterized protein LOC111007267 [Momordica charantia]9.7e-9792.78Show/hide
Query:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
        METTS SPSPTRSRGGHRHSGSG+GDERPRFFD KAKAICWAKAD+VPGRHP+RWRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTA+NCQILQ
Subjt:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ

Query:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
        TRVNRFKSDK+DVD S+LKGYSCDV+FTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP +EDSL
Subjt:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL

XP_038878253.1 uncharacterized protein LOC120070538 [Benincasa hispida]7.2e-10096.11Show/hide
Query:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
        ME TSSSPSPTRSRGGHRHSGSGSGDERPRFFD KAKAICW KADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
Subjt:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ

Query:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
        TRVNRFKS++NDVDTSELKGYSCD+KFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYK+KDRLAPCKLPYNEDSL
Subjt:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL

TrEMBL top hitse value%identityAlignment
A0A0A0LUK3 HNHc domain-containing protein4.7e-9795.51Show/hide
Query:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
        ME TSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
Subjt:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ

Query:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNED
        TRVNRFKS+K+DVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSE+LGQYKSKDRLAPCKLPYNE+
Subjt:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNED

A0A1S3BVP6 uncharacterized protein LOC103494011 isoform X26.6e-9996.67Show/hide
Query:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
        ME TSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
Subjt:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ

Query:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
        TRVNRFKS+K+DVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
Subjt:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL

A0A1S3BVR0 uncharacterized protein LOC103494011 isoform X13.6e-9794.57Show/hide
Query:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
        ME TSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
Subjt:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ

Query:  TRVNRFKSDKNDVDTSELKGYSCDVKFT----DKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
        TRVNRFKS+K+DVDTSELKGYSCDVKFT    DKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
Subjt:  TRVNRFKSDKNDVDTSELKGYSCDVKFT----DKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL

A0A5A7UWI1 HNH endonuclease6.6e-9996.67Show/hide
Query:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
        ME TSSSPSPTRSRGG R SGSGSGDERPRFFDAKAKA CWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
Subjt:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ

Query:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
        TRVNRFKS+K+DVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
Subjt:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL

A0A6J1C0N7 uncharacterized protein LOC1110072674.7e-9792.78Show/hide
Query:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ
        METTS SPSPTRSRGGHRHSGSG+GDERPRFFD KAKAICWAKAD+VPGRHP+RWRKDAAGNVVCKRFCNCQGCLCFEYDHIVP+SKGGESTA+NCQILQ
Subjt:  METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQ

Query:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL
        TRVNRFKSDK+DVD S+LKGYSCDV+FTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP +EDSL
Subjt:  TRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G18680.1 HNH endonuclease domain-containing protein2.2e-7069.19Show/hide
Query:  TTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTR
        T ++ P P+      R +   +G+ERPRFFD KAK  CWA AD+VPGRHPERWRKD AGN+VCKRF NC GCLCFEYDHIVPYSKGGES A+NCQILQTR
Subjt:  TTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTR

Query:  VNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP
        VNRFKS + +VD + LK YSC ++FTDKELD+IEMAVYGDV+RPG +CRC+TV+E+LGQ KSKD  A C+LP
Subjt:  VNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLP

AT3G47490.1 HNH endonuclease8.6e-3547.76Show/hide
Query:  SGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELK
        SG G  +  PR F    K  CW KA+ + GR PERWR+D  GN+V ++   C GCLC +YDHIVPYSKGG+ST +NCQ+LQ +VNR K +K D+  SEL 
Subjt:  SGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDKNDVDTSELK

Query:  GYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCR
          S   +   +++D+IE+  YG+V R      CR
Subjt:  GYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCR

AT3G47490.2 HNH endonuclease1.3e-1752.94Show/hide
Query:  SGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSK
        SG G  +  PR F    K  CW KA+ + GR PERWR+D  GN+V ++   C GCLC +YDHIVPYSK
Subjt:  SGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSK

AT3G47490.3 HNH endonuclease3.4e-3141.56Show/hide
Query:  SGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYS--------------------KGGESTADNCQIL
        SG G  +  PR F    K  CW KA+ + GR PERWR+D  GN+V ++   C GCLC +YDHIVPYS                    KGG+ST +NCQ+L
Subjt:  SGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYS--------------------KGGESTADNCQIL

Query:  QTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCR
        Q +VNR K +K D+  SEL   S   +   +++D+IE+  YG+V R      CR
Subjt:  QTRVNRFKSDKNDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACTACTTCCAGTTCGCCGTCACCGACTCGTTCCCGCGGCGGACATAGACACAGTGGCTCCGGAAGTGGGGACGAACGGCCAAGATTTTTCGACGCAAAAGCGAA
AGCCATTTGTTGGGCTAAGGCGGATGTTGTCCCTGGCCGACATCCCGAGCGTTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGTAAGCGCTTCTGCAACTGCCAGGGCT
GCCTCTGCTTCGAGTACGATCACATTGTCCCTTACTCCAAAGGCGGCGAATCCACAGCGGATAATTGCCAGATTCTTCAGACTAGAGTAAACAGATTCAAATCGGACAAA
AACGACGTTGATACGTCTGAGTTGAAAGGCTATTCATGTGATGTCAAGTTTACTGATAAGGAGCTGGACATAATTGAAATGGCTGTTTATGGAGATGTAATCCGGCCAGG
GAACCAGTGTCGTTGCAGAACAGTTTCTGAAATGCTTGGCCAATATAAATCCAAAGACCGCTTGGCCCCCTGCAAATTGCCGTATAATGAAGATTCTTTGTAA
mRNA sequenceShow/hide mRNA sequence
AAATTAACAAGTAGGAAATGATCTCACGTCTTCAGTTTCTTCCCTTTCTGTCTTCTACAAGTCCGATCCGCTGGCCGGCGTCCCGACTCCGATGGAAACTACTTCCAGTT
CGCCGTCACCGACTCGTTCCCGCGGCGGACATAGACACAGTGGCTCCGGAAGTGGGGACGAACGGCCAAGATTTTTCGACGCAAAAGCGAAAGCCATTTGTTGGGCTAAG
GCGGATGTTGTCCCTGGCCGACATCCCGAGCGTTGGCGTAAGGACGCCGCTGGTAATGTCGTCTGTAAGCGCTTCTGCAACTGCCAGGGCTGCCTCTGCTTCGAGTACGA
TCACATTGTCCCTTACTCCAAAGGCGGCGAATCCACAGCGGATAATTGCCAGATTCTTCAGACTAGAGTAAACAGATTCAAATCGGACAAAAACGACGTTGATACGTCTG
AGTTGAAAGGCTATTCATGTGATGTCAAGTTTACTGATAAGGAGCTGGACATAATTGAAATGGCTGTTTATGGAGATGTAATCCGGCCAGGGAACCAGTGTCGTTGCAGA
ACAGTTTCTGAAATGCTTGGCCAATATAAATCCAAAGACCGCTTGGCCCCCTGCAAATTGCCGTATAATGAAGATTCTTTGTAACAACAAAGAAGACTTAAAACTAAAGC
ATGTTTGCCCCATTTGGTATAGATCTAGAATTTAATACGCTCGATACGAATACTGTTAGATTATATCAATTAGAAACTGTGGACCTCCATTACTTGGTTAGATCAATATC
AATGAACATCGACCATCATTTCTTTATGTATTATTAATACAATGTTGTGTGTTCATTAAATAGTTGAAAAGAAAGTTTAAAGACACAAAATTCAAATATGTGGCAAACAG
ATTTTGGACTTTAAAAATAAGATCTACTAGACACTTTCTAAAAATTTACAAAA
Protein sequenceShow/hide protein sequence
METTSSSPSPTRSRGGHRHSGSGSGDERPRFFDAKAKAICWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEYDHIVPYSKGGESTADNCQILQTRVNRFKSDK
NDVDTSELKGYSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCRTVSEMLGQYKSKDRLAPCKLPYNEDSL