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Lsi06G014510 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G014510
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionExonuclease domain-containing protein
Genome locationchr06:25063991..25064305
RNA-Seq ExpressionLsi06G014510
SyntenyLsi06G014510
Gene Ontology termsGO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR013520 - Exonuclease, RNase T/DNA polymerase III
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057957.1 protein NEN1 [Cucumis melo var. makuwa]1.5e-4192.71Show/hide
Query:  MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL
        M PTEDRSEIAFFDVETTVPTRQGQ+FSILEFGAILVCP+KLVELESYSTLV+PSDLSLISSLSVRCNGITRDAVISSPTFA+IADRVYDILHG +
Subjt:  MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL

XP_008453220.1 PREDICTED: protein NEN1 [Cucumis melo]1.5e-4192.71Show/hide
Query:  MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL
        M PTEDRSEIAFFDVETTVPTRQGQ+FSILEFGAILVCP+KLVELESYSTLV+PSDLSLISSLSVRCNGITRDAVISSPTFA+IADRVYDILHG +
Subjt:  MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL

XP_011660176.1 protein NEN1 [Cucumis sativus]1.5e-4192.71Show/hide
Query:  MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL
        M PTEDRSEIAFFDVETTVPTRQGQ+FSILEFGAILVCP+KLVELESYSTLV+PSDLSLISSLSVRCNGITRDAVISSPTFA+IADRVYDILHG +
Subjt:  MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL

XP_022135360.1 protein NEN1-like [Momordica charantia]4.4e-4191.67Show/hide
Query:  MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL
        M PTEDRSEIAFFDVETTVPTRQGQ+FSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAV+S+P FA+IADRVYDILHG +
Subjt:  MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL

XP_038880150.1 protein NEN1-like [Benincasa hispida]1.2e-4194.79Show/hide
Query:  MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL
        M  TEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFA+IADRVYDILHG +
Subjt:  MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL

TrEMBL top hitse value%identityAlignment
A0A0A0LSC3 Exonuclease domain-containing protein7.3e-4292.71Show/hide
Query:  MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL
        M PTEDRSEIAFFDVETTVPTRQGQ+FSILEFGAILVCP+KLVELESYSTLV+PSDLSLISSLSVRCNGITRDAVISSPTFA+IADRVYDILHG +
Subjt:  MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL

A0A1S3BWV4 protein NEN17.3e-4292.71Show/hide
Query:  MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL
        M PTEDRSEIAFFDVETTVPTRQGQ+FSILEFGAILVCP+KLVELESYSTLV+PSDLSLISSLSVRCNGITRDAVISSPTFA+IADRVYDILHG +
Subjt:  MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL

A0A5A7UTA8 Protein NEN17.3e-4292.71Show/hide
Query:  MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL
        M PTEDRSEIAFFDVETTVPTRQGQ+FSILEFGAILVCP+KLVELESYSTLV+PSDLSLISSLSVRCNGITRDAVISSPTFA+IADRVYDILHG +
Subjt:  MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL

A0A6J1C0W8 protein NEN1-like2.1e-4191.67Show/hide
Query:  MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL
        M PTEDRSEIAFFDVETTVPTRQGQ+FSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAV+S+P FA+IADRVYDILHG +
Subjt:  MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL

A0A6J1JJE4 protein NEN1-like6.2e-4192.71Show/hide
Query:  MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL
        M PT DRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKL ELESYSTLVRPSDLSLISSLSVRCNGITRDAVIS+PTFA+IADRVYDILHG +
Subjt:  MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL

SwissProt top hitse value%identityAlignment
F4JJ23 Protein NEN42.1e-2252.81Show/hide
Query:  SEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL
        +EI FFD+ET VP + GQ F ILEFGAI+VCP+KL ELES++TL++P DLS++S  S R +GITR  V ++P+F ++A++++ +L+G +
Subjt:  SEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL

Q0V842 Protein NEN24.3e-3167.71Show/hide
Query:  MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL
        + P EDRSEIAFFDVETT+P R GQ ++ILEFG+ILVCP+KLVEL++YS LVRP++L+LI+  SV+CNGI R+ V S+ TFA+IAD VYDILHG +
Subjt:  MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL

Q9CA74 Protein NEN32.5e-3171.74Show/hide
Query:  EDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL
        ++RSEIAFFD+ET VPT+ G+ F+ILEFGAILVCPR+L EL SYSTLVRP+DLSLIS+L+ R +GITRD V+S+ TF+EIAD+VYDILHG +
Subjt:  EDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL

Q9FLR0 Protein NEN11.2e-3378.26Show/hide
Query:  EDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL
        EDRSEIAFFDVETTVP R GQRF+ILEFG+ILVCP+KL EL SY+TLV+P+DLSLISSLSVRCNGI RD V+ +P FA+IAD VYDILHG +
Subjt:  EDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL

Arabidopsis top hitse value%identityAlignment
AT1G74390.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.8e-3271.74Show/hide
Query:  EDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL
        ++RSEIAFFD+ET VPT+ G+ F+ILEFGAILVCPR+L EL SYSTLVRP+DLSLIS+L+ R +GITRD V+S+ TF+EIAD+VYDILHG +
Subjt:  EDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL

AT1G74390.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.8e-3271.74Show/hide
Query:  EDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL
        ++RSEIAFFD+ET VPT+ G+ F+ILEFGAILVCPR+L EL SYSTLVRP+DLSLIS+L+ R +GITRD V+S+ TF+EIAD+VYDILHG +
Subjt:  EDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL

AT4G39810.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.5e-2352.81Show/hide
Query:  SEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL
        +EI FFD+ET VP + GQ F ILEFGAI+VCP+KL ELES++TL++P DLS++S  S R +GITR  V ++P+F ++A++++ +L+G +
Subjt:  SEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL

AT5G07710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.5e-3578.26Show/hide
Query:  EDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL
        EDRSEIAFFDVETTVP R GQRF+ILEFG+ILVCP+KL EL SY+TLV+P+DLSLISSLSVRCNGI RD V+ +P FA+IAD VYDILHG +
Subjt:  EDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL

AT5G61390.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.0e-3267.71Show/hide
Query:  MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL
        + P EDRSEIAFFDVETT+P R GQ ++ILEFG+ILVCP+KLVEL++YS LVRP++L+LI+  SV+CNGI R+ V S+ TFA+IAD VYDILHG +
Subjt:  MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCGACGGAGGATCGATCGGAGATTGCCTTCTTTGATGTCGAGACCACCGTTCCTACCCGCCAAGGTCAGAGATTTTCAATTTTGGAATTTGGTGCGATTCTGGT
TTGCCCTAGGAAGCTGGTTGAGTTGGAGAGCTACTCCACTCTCGTTCGACCTTCTGATCTCTCGCTTATTTCCTCGTTATCGGTACGATGCAATGGCATTACTAGAGATG
CTGTCATTTCTTCCCCTACTTTCGCCGAAATTGCTGATAGGGTTTACGATATCCTTCACGGTACTCTCTCCCTCTCTCTTTTGATACCACACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCGACGGAGGATCGATCGGAGATTGCCTTCTTTGATGTCGAGACCACCGTTCCTACCCGCCAAGGTCAGAGATTTTCAATTTTGGAATTTGGTGCGATTCTGGT
TTGCCCTAGGAAGCTGGTTGAGTTGGAGAGCTACTCCACTCTCGTTCGACCTTCTGATCTCTCGCTTATTTCCTCGTTATCGGTACGATGCAATGGCATTACTAGAGATG
CTGTCATTTCTTCCCCTACTTTCGCCGAAATTGCTGATAGGGTTTACGATATCCTTCACGGTACTCTCTCCCTCTCTCTTTTGATACCACACTAA
Protein sequenceShow/hide protein sequence
MAPTEDRSEIAFFDVETTVPTRQGQRFSILEFGAILVCPRKLVELESYSTLVRPSDLSLISSLSVRCNGITRDAVISSPTFAEIADRVYDILHGTLSLSLLIPH