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Lsi06G014680 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G014680
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionmini zinc finger
Genome locationchr06:25190290..25190565
RNA-Seq ExpressionLsi06G014680
SyntenyLsi06G014680
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR006456 - ZF-HD homeobox protein, Cys/His-rich dimerisation domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7023191.1 Mini zinc finger protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]5.0e-4192.47Show/hide
Query:  MKKRLVVVKKSDGSGGR--RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN
        MKKR+VVVKKSDG GGR  RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGE+GTEEAL+CAACGCHRNFHRREVDAEVVFEYSPPNS+
Subjt:  MKKRLVVVKKSDGSGGR--RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN

XP_022135253.1 mini zinc finger protein 3-like [Momordica charantia]5.0e-4194.57Show/hide
Query:  MKKRLVVVKKSDGSGGR-RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN
        MKKRLVVVKKSDGSGGR RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEAL CAAC CHRNFHRREVD+EVVFEYSPPNS+
Subjt:  MKKRLVVVKKSDGSGGR-RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN

XP_022921765.1 mini zinc finger protein 3-like [Cucurbita moschata]1.3e-4193.55Show/hide
Query:  MKKRLVVVKKSDGSGGR--RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN
        MKKR+VVVKKSDGSGGR  RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGE+GTEEAL+CAACGCHRNFHRREVDAEVVFEYSPPNS+
Subjt:  MKKRLVVVKKSDGSGGR--RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN

XP_022987207.1 mini zinc finger protein 3-like [Cucurbita maxima]2.9e-4192.47Show/hide
Query:  MKKRLVVVKKSDGSGGR--RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN
        MKKR+VVVKKSDGSGGR  RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGE+GTEEAL+CAACGCHRNFHRR+VDAEVVFEYSPPNS+
Subjt:  MKKRLVVVKKSDGSGGR--RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN

XP_038880256.1 mini zinc finger protein 3 [Benincasa hispida]5.9e-4293.68Show/hide
Query:  MKKRLVVVKKSDGSGGR----RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN
        MKKRLVVVKKSDGS GR    RS SGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN
Subjt:  MKKRLVVVKKSDGSGGR----RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN

TrEMBL top hitse value%identityAlignment
A0A0A0LSA6 ZF-HD dimerization-type domain-containing protein3.2e-4191.58Show/hide
Query:  MKKRLVVVKKSDGSGGRR----SGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN
        MKKRLVVV+KSDGS GRR    S SGS VRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN
Subjt:  MKKRLVVVKKSDGSGGRR----SGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN

A0A5A7UWS7 Mini zinc finger protein 3-like4.1e-4190.62Show/hide
Query:  MKKRLVVVKKSDGSGGRR-----SGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN
        MKKRLVVVKKSDGS GRR     + SGS VRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN
Subjt:  MKKRLVVVKKSDGSGGRR-----SGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN

A0A6J1C4B2 mini zinc finger protein 3-like2.4e-4194.57Show/hide
Query:  MKKRLVVVKKSDGSGGR-RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN
        MKKRLVVVKKSDGSGGR RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEAL CAAC CHRNFHRREVD+EVVFEYSPPNS+
Subjt:  MKKRLVVVKKSDGSGGR-RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN

A0A6J1E6Q9 mini zinc finger protein 3-like6.4e-4293.55Show/hide
Query:  MKKRLVVVKKSDGSGGR--RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN
        MKKR+VVVKKSDGSGGR  RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGE+GTEEAL+CAACGCHRNFHRREVDAEVVFEYSPPNS+
Subjt:  MKKRLVVVKKSDGSGGR--RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN

A0A6J1J9R5 mini zinc finger protein 3-like1.4e-4192.47Show/hide
Query:  MKKRLVVVKKSDGSGGR--RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN
        MKKR+VVVKKSDGSGGR  RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGE+GTEEAL+CAACGCHRNFHRR+VDAEVVFEYSPPNS+
Subjt:  MKKRLVVVKKSDGSGGR--RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN

SwissProt top hitse value%identityAlignment
B8BIU8 Mini zinc finger protein 13.0e-2070.97Show/hide
Query:  RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDA
        R  +  VVRY ECQ+NHAA +GG AVDGCREFMA G +GT  AL CAACGCHR+FHRREV+A
Subjt:  RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDA

Q2Q493 Mini zinc finger protein 32.3e-2870.33Show/hide
Query:  MKKRLVVVKKSDGSGGRRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN
        MKKR VV+K+   S    S S S VRY ECQKNHAA +GG+AVDGCREFMA G D   +AL CAACGCHRNFHRREVD EVV EYSPPN+N
Subjt:  MKKRLVVVKKSDGSGGRRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN

Q2RB28 Mini zinc finger protein 13.0e-2070.97Show/hide
Query:  RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDA
        R  +  VVRY ECQ+NHAA +GG AVDGCREFMA G +GT  AL CAACGCHR+FHRREV+A
Subjt:  RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDA

Q9CA51 Mini zinc finger protein 11.1e-2760.4Show/hide
Query:  MKKRLVVVKK-----------SDGSGGRRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPN
        MKKR +V+K+           +  S    S   S VRY ECQKNHAA +GG+AVDGCREFMA G +GT +AL CAACGCHRNFHR+EVD EVV EYSPPN
Subjt:  MKKRLVVVKK-----------SDGSGGRRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPN

Query:  S
        +
Subjt:  S

Q9LJW5 Mini zinc finger protein 27.5e-2457.73Show/hide
Query:  MKKRLVVVKKSDGSGGRRSGSGS------VVRYAECQKNHAAKLGGFAVDGCREFMA-RGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNS
        M+KR VV++++      RS S +       VRY ECQKNHAA +GG+AVDGCREFMA RGE+GT  AL CAACGCHR+FHRRE++ EVV + + P S
Subjt:  MKKRLVVVKKSDGSGGRRSGSGS------VVRYAECQKNHAAKLGGFAVDGCREFMA-RGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNS

Arabidopsis top hitse value%identityAlignment
AT1G18835.1 mini zinc finger1.6e-2970.33Show/hide
Query:  MKKRLVVVKKSDGSGGRRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN
        MKKR VV+K+   S    S S S VRY ECQKNHAA +GG+AVDGCREFMA G D   +AL CAACGCHRNFHRREVD EVV EYSPPN+N
Subjt:  MKKRLVVVKKSDGSGGRRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN

AT1G74660.1 mini zinc finger 18.0e-2960.4Show/hide
Query:  MKKRLVVVKK-----------SDGSGGRRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPN
        MKKR +V+K+           +  S    S   S VRY ECQKNHAA +GG+AVDGCREFMA G +GT +AL CAACGCHRNFHR+EVD EVV EYSPPN
Subjt:  MKKRLVVVKK-----------SDGSGGRRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPN

Query:  S
        +
Subjt:  S

AT2G02540.1 homeobox protein 215.7e-1959.38Show/hide
Query:  VVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSP
        V++Y EC KNHAA +GG A+DGC EFM  GE+G+ EAL C+ C CHRNFHRRE + E    +SP
Subjt:  VVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSP

AT3G28917.1 mini zinc finger 25.4e-2557.73Show/hide
Query:  MKKRLVVVKKSDGSGGRRSGSGS------VVRYAECQKNHAAKLGGFAVDGCREFMA-RGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNS
        M+KR VV++++      RS S +       VRY ECQKNHAA +GG+AVDGCREFMA RGE+GT  AL CAACGCHR+FHRRE++ EVV + + P S
Subjt:  MKKRLVVVKKSDGSGGRRSGSGS------VVRYAECQKNHAAKLGGFAVDGCREFMA-RGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNS

AT4G24660.1 homeobox protein 222.7e-2164.18Show/hide
Query:  GSGGRRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDA
        G  GR  G G+ +RY EC KNHA  +GG AVDGC EFM  GEDGT +AL CAACGCHRNFHR+E ++
Subjt:  GSGGRRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAAAGGTTGGTGGTGGTGAAGAAATCTGATGGCTCTGGTGGCCGACGCTCCGGTTCGGGCTCGGTCGTGCGCTACGCGGAGTGCCAGAAGAATCACGCAGCAAA
GCTCGGGGGGTTCGCAGTCGACGGTTGCCGGGAATTCATGGCAAGAGGAGAGGATGGAACTGAGGAGGCTCTCAATTGTGCTGCTTGTGGCTGCCACAGGAATTTTCATA
GAAGGGAAGTGGATGCTGAAGTTGTTTTTGAGTATTCTCCTCCAAACTCCAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAAAGGTTGGTGGTGGTGAAGAAATCTGATGGCTCTGGTGGCCGACGCTCCGGTTCGGGCTCGGTCGTGCGCTACGCGGAGTGCCAGAAGAATCACGCAGCAAA
GCTCGGGGGGTTCGCAGTCGACGGTTGCCGGGAATTCATGGCAAGAGGAGAGGATGGAACTGAGGAGGCTCTCAATTGTGCTGCTTGTGGCTGCCACAGGAATTTTCATA
GAAGGGAAGTGGATGCTGAAGTTGTTTTTGAGTATTCTCCTCCAAACTCCAATTAA
Protein sequenceShow/hide protein sequence
MKKRLVVVKKSDGSGGRRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN