; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi06G014930 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G014930
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionF-box protein
Genome locationchr06:25395077..25395501
RNA-Seq ExpressionLsi06G014930
SyntenyLsi06G014930
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039746.1 F-box protein [Cucumis melo var. makuwa]6.3e-3458.59Show/hide
Query:  VLKVGPCSKV----WNLHQFNGTIYATFLFDLPT--KTIQVWRMIEKDLWIREFIINDIPNDWIFPKLVKTFEDGEILLMMNMDFFCFYNPVTGRKKMIH
        VL +GP S       +L QFNG++YATF  D  T    IQVWRM EKDLWI+EF+I+DIPN+W    L+K FEDGEIL M+N+DFFC+YN  TGRKK++ 
Subjt:  VLKVGPCSKV----WNLHQFNGTIYATFLFDLPT--KTIQVWRMIEKDLWIREFIINDIPNDWIFPKLVKTFEDGEILLMMNMDFFCFYNPVTGRKKMIH

Query:  NNQKKLRQICQIDSLNFGSLSNILMGHE
         NQKK R +C+I+ LNFG L NIL G E
Subjt:  NNQKKLRQICQIDSLNFGSLSNILMGHE

KAA0039747.1 F-box protein [Cucumis melo var. makuwa]6.3e-3459.06Show/hide
Query:  VLKVGPC--SKVWNLHQFNGTIYATFLFDLPT--KTIQVWRMIEKDLWIREFIINDIPNDWIFPKLVKTFEDGEILLMMNMDFFCFYNPVTGRKKMIHNN
        +L +GPC  S   +L QFN ++YATF  +  T   +IQVWRM EKDLWIREF+I DIP +W    L+K FEDGEIL M+N+DFFC+YN  TGRKK++  N
Subjt:  VLKVGPC--SKVWNLHQFNGTIYATFLFDLPT--KTIQVWRMIEKDLWIREFIINDIPNDWIFPKLVKTFEDGEILLMMNMDFFCFYNPVTGRKKMIHNN

Query:  QKKLRQICQIDSLNFGSLSNILMGHET
        QKK R++CQI+ LNFG L NIL G ET
Subjt:  QKKLRQICQIDSLNFGSLSNILMGHET

TYK24751.1 F-box protein [Cucumis melo var. makuwa]4.8e-3458.14Show/hide
Query:  VLKVGPCSKV----WNLHQFNGTIYATFLFDLPT--KTIQVWRMIEKDLWIREFIINDIPNDWIFPKLVKTFEDGEILLMMNMDFFCFYNPVTGRKKMIH
        VL +GP S       +L QFNG++YATF  D  T    IQVWRM EKDLWI+EF+I+DIPN+W    L+K FEDGEIL M+N+DFFC+YN  TGRKK++ 
Subjt:  VLKVGPCSKV----WNLHQFNGTIYATFLFDLPT--KTIQVWRMIEKDLWIREFIINDIPNDWIFPKLVKTFEDGEILLMMNMDFFCFYNPVTGRKKMIH

Query:  NNQKKLRQICQIDSLNFGSLSNILMGHET
         NQKK R +C+I+ LNFG L NIL G E+
Subjt:  NNQKKLRQICQIDSLNFGSLSNILMGHET

XP_008460183.1 PREDICTED: uncharacterized protein LOC103499068 [Cucumis melo]2.2e-2351.18Show/hide
Query:  VLKVGPC--SKVWNLHQFNGTIYATFLFDLPT--KTIQVWRMIEKDLWIREFIINDIPNDWIFPKLVKTFEDGEILLMMNMDFFCFYNPVTGRKKMIHNN
        +L +GPC  S   +L QFN ++YATF  +  T   +IQVWRM EKDLWIREF+I DIP +W    L+K FEDGEIL                RKK++  N
Subjt:  VLKVGPC--SKVWNLHQFNGTIYATFLFDLPT--KTIQVWRMIEKDLWIREFIINDIPNDWIFPKLVKTFEDGEILLMMNMDFFCFYNPVTGRKKMIHNN

Query:  QKKLRQICQIDSLNFGSLSNILMGHET
        QKK R++CQI+ LNFG L NIL G ET
Subjt:  QKKLRQICQIDSLNFGSLSNILMGHET

XP_038890298.1 F-box protein At3g07870-like [Benincasa hispida]6.1e-3762.4Show/hide
Query:  IVLKVGP---CSKVWNLHQFNGTIYATFLFDLPT-KTIQVWRMIEKDLWIREFIINDIPNDWIFPKLVKTFEDGEILLMMNMDFFCFYNPVTGRKKMIHN
        IVL++ P    SKV  + QFN ++YA FL + PT  +IQVWRM EKDLWIREF+++DIPNDW    L+K FEDGEIL M+N DFFC+YNP+TGRKK+I  
Subjt:  IVLKVGP---CSKVWNLHQFNGTIYATFLFDLPT-KTIQVWRMIEKDLWIREFIINDIPNDWIFPKLVKTFEDGEILLMMNMDFFCFYNPVTGRKKMIHN

Query:  NQKKLRQICQIDSLNFGSLSNILMG
        N+KK+R +CQI SLNFG L NIL G
Subjt:  NQKKLRQICQIDSLNFGSLSNILMG

TrEMBL top hitse value%identityAlignment
A0A0A0LPC6 Uncharacterized protein3.6e-2755.45Show/hide
Query:  LHQFNGTIYATFL--FDLPTKTIQVWRMIEKDLWIREFIINDIPNDWIFPKLVKTFEDGEILLMMNMDFFCFYNPVTGRKKMIHNNQKKLRQICQIDSLN
        +H FNGTIYA F   ++  ++TIQVW M EK  WIR+F+I DI  +W   +L+K FEDGEIL +++ DFFCFY+P+T +K++I  NQKK R +CQI+ LN
Subjt:  LHQFNGTIYATFL--FDLPTKTIQVWRMIEKDLWIREFIINDIPNDWIFPKLVKTFEDGEILLMMNMDFFCFYNPVTGRKKMIHNNQKKLRQICQIDSLN

Query:  FGSLSNILMG
        FGSL  IL G
Subjt:  FGSLSNILMG

A0A0A0LWG1 F-box domain-containing protein5.7e-3359.35Show/hide
Query:  IVLKVGPCSKVWNLHQFNGTIYATF--LFDLPTKTIQVWRMIEKDLWIREFIINDIPNDWIFPKLVKTFEDGEILLMMNMDFFCFYNPVTGRKKMIHNNQ
        +VL+V P +    +HQFNGTIYATF   ++  ++TIQVWRM EKD W+R+F+I DI  +WI  +L+K FED EIL M+NMDFFCFYNP + +K++I  NQ
Subjt:  IVLKVGPCSKVWNLHQFNGTIYATF--LFDLPTKTIQVWRMIEKDLWIREFIINDIPNDWIFPKLVKTFEDGEILLMMNMDFFCFYNPVTGRKKMIHNNQ

Query:  KKLRQICQIDSLNFGSLSNILMG
        KK R ICQI+SLNFG LS IL G
Subjt:  KKLRQICQIDSLNFGSLSNILMG

A0A5A7TCF3 F-box protein3.0e-3458.59Show/hide
Query:  VLKVGPCSKV----WNLHQFNGTIYATFLFDLPT--KTIQVWRMIEKDLWIREFIINDIPNDWIFPKLVKTFEDGEILLMMNMDFFCFYNPVTGRKKMIH
        VL +GP S       +L QFNG++YATF  D  T    IQVWRM EKDLWI+EF+I+DIPN+W    L+K FEDGEIL M+N+DFFC+YN  TGRKK++ 
Subjt:  VLKVGPCSKV----WNLHQFNGTIYATFLFDLPT--KTIQVWRMIEKDLWIREFIINDIPNDWIFPKLVKTFEDGEILLMMNMDFFCFYNPVTGRKKMIH

Query:  NNQKKLRQICQIDSLNFGSLSNILMGHE
         NQKK R +C+I+ LNFG L NIL G E
Subjt:  NNQKKLRQICQIDSLNFGSLSNILMGHE

A0A5A7TE00 F-box protein3.0e-3459.06Show/hide
Query:  VLKVGPC--SKVWNLHQFNGTIYATFLFDLPT--KTIQVWRMIEKDLWIREFIINDIPNDWIFPKLVKTFEDGEILLMMNMDFFCFYNPVTGRKKMIHNN
        +L +GPC  S   +L QFN ++YATF  +  T   +IQVWRM EKDLWIREF+I DIP +W    L+K FEDGEIL M+N+DFFC+YN  TGRKK++  N
Subjt:  VLKVGPC--SKVWNLHQFNGTIYATFLFDLPT--KTIQVWRMIEKDLWIREFIINDIPNDWIFPKLVKTFEDGEILLMMNMDFFCFYNPVTGRKKMIHNN

Query:  QKKLRQICQIDSLNFGSLSNILMGHET
        QKK R++CQI+ LNFG L NIL G ET
Subjt:  QKKLRQICQIDSLNFGSLSNILMGHET

A0A5D3DMB7 F-box protein2.3e-3458.14Show/hide
Query:  VLKVGPCSKV----WNLHQFNGTIYATFLFDLPT--KTIQVWRMIEKDLWIREFIINDIPNDWIFPKLVKTFEDGEILLMMNMDFFCFYNPVTGRKKMIH
        VL +GP S       +L QFNG++YATF  D  T    IQVWRM EKDLWI+EF+I+DIPN+W    L+K FEDGEIL M+N+DFFC+YN  TGRKK++ 
Subjt:  VLKVGPCSKV----WNLHQFNGTIYATFLFDLPT--KTIQVWRMIEKDLWIREFIINDIPNDWIFPKLVKTFEDGEILLMMNMDFFCFYNPVTGRKKMIH

Query:  NNQKKLRQICQIDSLNFGSLSNILMGHET
         NQKK R +C+I+ LNFG L NIL G E+
Subjt:  NNQKKLRQICQIDSLNFGSLSNILMGHET

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGTCTTGAAAGTTGGCCCTTGCTCAAAAGTGTGGAACTTGCATCAATTTAATGGTACTATTTATGCAACTTTTTTATTTGACTTGCCAACAAAGACTATTCAAGT
GTGGAGGATGATCGAGAAAGATTTATGGATAAGGGAATTTATTATTAATGACATACCAAATGATTGGATCTTCCCGAAACTCGTCAAAACTTTTGAAGATGGAGAGATAT
TGTTAATGATGAATATGGACTTTTTTTGCTTCTACAATCCTGTCACTGGGAGGAAAAAGATGATCCATAATAATCAAAAGAAGTTGAGACAAATTTGTCAAATAGACTCT
TTGAATTTTGGTTCTCTCTCAAATATTTTGATGGGACACGAGACAACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTGTCTTGAAAGTTGGCCCTTGCTCAAAAGTGTGGAACTTGCATCAATTTAATGGTACTATTTATGCAACTTTTTTATTTGACTTGCCAACAAAGACTATTCAAGT
GTGGAGGATGATCGAGAAAGATTTATGGATAAGGGAATTTATTATTAATGACATACCAAATGATTGGATCTTCCCGAAACTCGTCAAAACTTTTGAAGATGGAGAGATAT
TGTTAATGATGAATATGGACTTTTTTTGCTTCTACAATCCTGTCACTGGGAGGAAAAAGATGATCCATAATAATCAAAAGAAGTTGAGACAAATTTGTCAAATAGACTCT
TTGAATTTTGGTTCTCTCTCAAATATTTTGATGGGACACGAGACAACCTGA
Protein sequenceShow/hide protein sequence
MIVLKVGPCSKVWNLHQFNGTIYATFLFDLPTKTIQVWRMIEKDLWIREFIINDIPNDWIFPKLVKTFEDGEILLMMNMDFFCFYNPVTGRKKMIHNNQKKLRQICQIDS
LNFGSLSNILMGHETT