; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi06G015310 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G015310
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description39S ribosomal protein L47, mitochondrial
Genome locationchr06:25703886..25708508
RNA-Seq ExpressionLsi06G015310
SyntenyLsi06G015310
Gene Ontology termsGO:0032543 - mitochondrial translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001854 - Ribosomal protein L29/L35
IPR010729 - Ribosomal protein L47, mitochondrial
IPR036049 - Ribosomal protein L29/L35 superfamily
IPR038340 - MRP-L47 superfamily, mitochondrial


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138121.1 39S ribosomal protein L47, mitochondrial [Cucumis sativus]3.3e-6997.2Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF
        MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF

Query:  PNPERIPKVRKSLCRIKQVLTERAIDEPDPRRSAEMKRMINAL
        PNPERIPKVRKS+CRIK VLTERAIDEPDPRRSAEMKRMINAL
Subjt:  PNPERIPKVRKSLCRIKQVLTERAIDEPDPRRSAEMKRMINAL

XP_008453113.1 PREDICTED: 39S ribosomal protein L47, mitochondrial [Cucumis melo]1.2e-6897.2Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF
        MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF

Query:  PNPERIPKVRKSLCRIKQVLTERAIDEPDPRRSAEMKRMINAL
        PNPERI KVRKS+CRIK VLTERAIDEPDPRRSAEMKRMINAL
Subjt:  PNPERIPKVRKSLCRIKQVLTERAIDEPDPRRSAEMKRMINAL

XP_022968794.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima]4.0e-6793.01Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF
        M LTR+FGRTFLAAARSETS+ATAAA +TARTGYNPLEEFFEA RSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF

Query:  PNPERIPKVRKSLCRIKQVLTERAIDEPDPRRSAEMKRMINAL
        PNPERIPKVRKS+CRIKQVLTERAIDEPDPRR AE+KRM+NAL
Subjt:  PNPERIPKVRKSLCRIKQVLTERAIDEPDPRRSAEMKRMINAL

XP_023530690.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo]3.1e-6793.01Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF
        MFLTR+FGRTFLAAARSE S+ATAAA +TARTGYNPLEEFFE  RSP+DDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF

Query:  PNPERIPKVRKSLCRIKQVLTERAIDEPDPRRSAEMKRMINAL
        PNPERIPKVRKS+CRIKQVLTERAIDEPDPRRSAEMKRM+NAL
Subjt:  PNPERIPKVRKSLCRIKQVLTERAIDEPDPRRSAEMKRMINAL

XP_038879389.1 39S ribosomal protein L47, mitochondrial [Benincasa hispida]8.6e-7097.9Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF
        MFLTRVFGRTFLAAARSETSSAT AAAATAR GYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF

Query:  PNPERIPKVRKSLCRIKQVLTERAIDEPDPRRSAEMKRMINAL
        PNPERIPKVRKS+CRIKQVLTERAIDEPDPRRSAEMKRMINAL
Subjt:  PNPERIPKVRKSLCRIKQVLTERAIDEPDPRRSAEMKRMINAL

TrEMBL top hitse value%identityAlignment
A0A0A0LS48 Uncharacterized protein1.6e-6997.2Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF
        MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+F
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF

Query:  PNPERIPKVRKSLCRIKQVLTERAIDEPDPRRSAEMKRMINAL
        PNPERIPKVRKS+CRIK VLTERAIDEPDPRRSAEMKRMINAL
Subjt:  PNPERIPKVRKSLCRIKQVLTERAIDEPDPRRSAEMKRMINAL

A0A1S3BWK4 39S ribosomal protein L47, mitochondrial6.0e-6997.2Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF
        MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDD KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF

Query:  PNPERIPKVRKSLCRIKQVLTERAIDEPDPRRSAEMKRMINAL
        PNPERI KVRKS+CRIK VLTERAIDEPDPRRSAEMKRMINAL
Subjt:  PNPERIPKVRKSLCRIKQVLTERAIDEPDPRRSAEMKRMINAL

A0A6J1C2P6 39S ribosomal protein L47, mitochondrial1.1e-6594.41Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF
        MFLTRVFGRT LAAARSETSSA AAAA+T RTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNLRF
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF

Query:  PNPERIPKVRKSLCRIKQVLTERAIDEPDPRRSAEMKRMINAL
         NPERIPKVRKS+CRIKQVLTERAI+EPDPRRSAEMKRMINAL
Subjt:  PNPERIPKVRKSLCRIKQVLTERAIDEPDPRRSAEMKRMINAL

A0A6J1I0P6 39S ribosomal protein L47, mitochondrial-like1.9e-6793.01Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF
        M LTR+FGRTFLAAARSETS+ATAAA +TARTGYNPLEEFFEA RSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF

Query:  PNPERIPKVRKSLCRIKQVLTERAIDEPDPRRSAEMKRMINAL
        PNPERIPKVRKS+CRIKQVLTERAIDEPDPRR AE+KRM+NAL
Subjt:  PNPERIPKVRKSLCRIKQVLTERAIDEPDPRRSAEMKRMINAL

A0A6J1JCZ2 39S ribosomal protein L47, mitochondrial7.4e-6795.1Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF
        MFLTRV GR FLAAARSETSSA AAAA+TA TGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRF

Query:  PNPERIPKVRKSLCRIKQVLTERAIDEPDPRRSAEMKRMINAL
        PNPERIPKVRKS+CRIKQVLTERAIDEPDPRRSAEMKRM+NAL
Subjt:  PNPERIPKVRKSLCRIKQVLTERAIDEPDPRRSAEMKRMINAL

SwissProt top hitse value%identityAlignment
P87232 54S ribosomal protein L4, mitochondrial2.7e-1042.39Show/hide
Query:  NPLEEFFEADRS-PDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP--NPERIPKVRKSLCRIKQVLTER
        +PL  FF   ++ P   +   +GR+W A ELR KS++DL+ LWY  L+EKN+L TQR  +    L  P  + ER+  V K++  IK VL ER
Subjt:  NPLEEFFEADRS-PDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFP--NPERIPKVRKSLCRIKQVLTER

Q08DT6 39S ribosomal protein L47, mitochondrial2.7e-1348.28Show/hide
Query:  LEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSLCRIKQVLTER
        LEEFF+  ++  ++K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L  P+PER+ KV  S+  + +V+ ER
Subjt:  LEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSLCRIKQVLTER

Q2H080 54S ribosomal protein L4, mitochondrial8.0e-1041.35Show/hide
Query:  LEEFFEADRSPDDDKPVV--YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNP---ERIPKVRKSLCRIKQVLTERAIDEPDPR
        L EFF+      +  P +  +GRSW A ELR KSWDDL++LW+V  KE+N + T     N   L F      ER   VR+++  IK VLTER     D  
Subjt:  LEEFFEADRSPDDDKPVV--YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNP---ERIPKVRKSLCRIKQVLTERAIDEPDPR

Query:  RSAE
        + AE
Subjt:  RSAE

Q8K2Y7 39S ribosomal protein L47, mitochondrial1.6e-1348.28Show/hide
Query:  LEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSLCRIKQVLTER
        LEEFF+  ++  ++K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L  P+PER+ KV  S+  + +V+ ER
Subjt:  LEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSLCRIKQVLTER

Q9HD33 39S ribosomal protein L47, mitochondrial1.0e-1247.13Show/hide
Query:  LEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSLCRIKQVLTER
        LEEFF+  ++   +K V  G +W   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q L  P+PER+ KV  S+  + +V+ ER
Subjt:  LEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSLCRIKQVLTER

Arabidopsis top hitse value%identityAlignment
AT1G07830.1 ribosomal protein L29 family protein3.6e-5879.86Show/hide
Query:  MFLTRVFGRTFLAAARSETSSATAAAAA-TARTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLR
        MFLTR  GR FLAAA + + S TAAAAA T RT  NPLEEFFE DRS D+DKPVVYGR WKASELRLKSWDDL KLWYVLLKEKNMLMTQRQML AQN++
Subjt:  MFLTRVFGRTFLAAARSETSSATAAAAA-TARTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLR

Query:  FPNPERIPKVRKSLCRIKQVLTERAIDEPDPRRSAEMKRMINAL
        FPNPERIPKVR+S+CRIK VLTERAI+EPD RRSAEMKRM+N +
Subjt:  FPNPERIPKVRKSLCRIKQVLTERAIDEPDPRRSAEMKRMINAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGGCTTCCGTCGCCACTGCTGCCTCTTTGCCGCTCGCTTGCCGGAGCCCAGATCGTCGCCGCTTGCAGGAGCCAAGCCTTGTTCGAGCTTCCGTAGCTGGCAACT
TGCCCCTTCTGTGTTCAGTCCGTCGCTCTGTAGTACGACCACGACCTTCAGAATCAGAGCCATGTTTTTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGAT
CAGAAACTTCTTCTGCCACAGCCGCTGCTGCTGCTACAGCTAGGACGGGCTATAACCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCCAGATGATGACAAACCCGTT
GTATATGGTCGAAGTTGGAAGGCTTCAGAACTGCGGCTCAAGTCTTGGGACGATCTTAATAAGCTATGGTATGTCCTGTTGAAGGAGAAAAATATGTTGATGACACAGCG
CCAGATGCTGAATGCACAAAATCTAAGGTTCCCTAATCCAGAACGCATTCCCAAGGTGAGGAAGTCACTGTGTCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGATG
AACCAGATCCTCGTAGATCCGCAGAGATGAAGAGGATGATAAACGCTCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGGGCTTCCGTCGCCACTGCTGCCTCTTTGCCGCTCGCTTGCCGGAGCCCAGATCGTCGCCGCTTGCAGGAGCCAAGCCTTGTTCGAGCTTCCGTAGCTGGCAACT
TGCCCCTTCTGTGTTCAGTCCGTCGCTCTGTAGTACGACCACGACCTTCAGAATCAGAGCCATGTTTTTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGAT
CAGAAACTTCTTCTGCCACAGCCGCTGCTGCTGCTACAGCTAGGACGGGCTATAACCCGCTTGAGGAGTTTTTTGAGGCAGATAGAAGTCCAGATGATGACAAACCCGTT
GTATATGGTCGAAGTTGGAAGGCTTCAGAACTGCGGCTCAAGTCTTGGGACGATCTTAATAAGCTATGGTATGTCCTGTTGAAGGAGAAAAATATGTTGATGACACAGCG
CCAGATGCTGAATGCACAAAATCTAAGGTTCCCTAATCCAGAACGCATTCCCAAGGTGAGGAAGTCACTGTGTCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGATG
AACCAGATCCTCGTAGATCCGCAGAGATGAAGAGGATGATAAACGCTCTGTAA
Protein sequenceShow/hide protein sequence
MWGFRRHCCLFAARLPEPRSSPLAGAKPCSSFRSWQLAPSVFSPSLCSTTTTFRIRAMFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDDKPV
VYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSLCRIKQVLTERAIDEPDPRRSAEMKRMINAL