; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi06G015870 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G015870
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDEAD-box ATP-dependent RNA helicase 20-like
Genome locationchr06:26286850..26287812
RNA-Seq ExpressionLsi06G015870
SyntenyLsi06G015870
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057824.1 DEAD-box ATP-dependent RNA helicase 20 isoform X1 [Cucumis melo var. makuwa]2.0e-3894.44Show/hide
Query:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRPQGHRGGFGNRTTVSGSNAIPLGLTTRPR
        RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALS LASSSGFGGSGA+FRPQGHRGGFG+RT VSGSNAIPLGL TRPR
Subjt:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRPQGHRGGFGNRTTVSGSNAIPLGLTTRPR

XP_004138092.1 DEAD-box ATP-dependent RNA helicase 20 isoform X1 [Cucumis sativus]4.0e-3996.67Show/hide
Query:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRPQGHRGGFGNRTTVSGSNAIPLGLTTRPR
        RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGA+FR QGHRGGFGNRT VSGSNAIPLGLTTRPR
Subjt:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRPQGHRGGFGNRTTVSGSNAIPLGLTTRPR

XP_008464517.1 PREDICTED: DEAD-box ATP-dependent RNA helicase 20 isoform X1 [Cucumis melo]2.0e-3894.44Show/hide
Query:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRPQGHRGGFGNRTTVSGSNAIPLGLTTRPR
        RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALS LASSSGFGGSGA+FRPQGHRGGFG+RT VSGSNAIPLGL TRPR
Subjt:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRPQGHRGGFGNRTTVSGSNAIPLGLTTRPR

XP_022135421.1 DEAD-box ATP-dependent RNA helicase 30 [Momordica charantia]2.8e-3284.62Show/hide
Query:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRP-QGHRGGFGNRTTVSGSNAIPLGLTTRPR
        RIGRTGRAGAKGTAFTFFTH NAKHAR+L+KILREAGQ+VTPALSALAS+SGFGG GA+FRP QG+RGG+GNRT VSGSNAIP+G  TRPR
Subjt:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRP-QGHRGGFGNRTTVSGSNAIPLGLTTRPR

XP_038879141.1 DEAD-box ATP-dependent RNA helicase 20-like isoform X1 [Benincasa hispida]8.9e-3995.56Show/hide
Query:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRPQGHRGGFGNRTTVSGSNAIPLGLTTRPR
        RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGS A+FRPQGHRGGFGNRT VSGSNAIPLGL TRPR
Subjt:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRPQGHRGGFGNRTTVSGSNAIPLGLTTRPR

TrEMBL top hitse value%identityAlignment
A0A0A0LP25 Helicase C-terminal domain-containing protein1.9e-3996.67Show/hide
Query:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRPQGHRGGFGNRTTVSGSNAIPLGLTTRPR
        RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGA+FR QGHRGGFGNRT VSGSNAIPLGLTTRPR
Subjt:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRPQGHRGGFGNRTTVSGSNAIPLGLTTRPR

A0A1S3CLM7 DEAD-box ATP-dependent RNA helicase 20 isoform X19.6e-3994.44Show/hide
Query:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRPQGHRGGFGNRTTVSGSNAIPLGLTTRPR
        RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALS LASSSGFGGSGA+FRPQGHRGGFG+RT VSGSNAIPLGL TRPR
Subjt:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRPQGHRGGFGNRTTVSGSNAIPLGLTTRPR

A0A5A7URR2 DEAD-box ATP-dependent RNA helicase 20 isoform X19.6e-3994.44Show/hide
Query:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRPQGHRGGFGNRTTVSGSNAIPLGLTTRPR
        RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALS LASSSGFGGSGA+FRPQGHRGGFG+RT VSGSNAIPLGL TRPR
Subjt:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRPQGHRGGFGNRTTVSGSNAIPLGLTTRPR

A0A5D3BJX7 DEAD-box ATP-dependent RNA helicase 20 isoform X19.6e-3994.44Show/hide
Query:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRPQGHRGGFGNRTTVSGSNAIPLGLTTRPR
        RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALS LASSSGFGGSGA+FRPQGHRGGFG+RT VSGSNAIPLGL TRPR
Subjt:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRPQGHRGGFGNRTTVSGSNAIPLGLTTRPR

A0A6J1C0Q1 DEAD-box ATP-dependent RNA helicase 301.3e-3284.62Show/hide
Query:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRP-QGHRGGFGNRTTVSGSNAIPLGLTTRPR
        RIGRTGRAGAKGTAFTFFTH NAKHAR+L+KILREAGQ+VTPALSALAS+SGFGG GA+FRP QG+RGG+GNRT VSGSNAIP+G  TRPR
Subjt:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRP-QGHRGGFGNRTTVSGSNAIPLGLTTRPR

SwissProt top hitse value%identityAlignment
G0SFM2 ATP-dependent RNA helicase DBP25.4e-1556.82Show/hide
Query:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRPQGHRGGFGNR-----TTVSGSNAIPL
        RIGRTGRAGAKGTA TFFT ENAK ARDL+ +L+EA Q V P L  +A  SG GGS +R+     RGG G R        SG+NA+P+
Subjt:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRPQGHRGGFGNR-----TTVSGSNAIPL

Q4X195 ATP-dependent RNA helicase dbp23.2e-1554.35Show/hide
Query:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRPQGHRGGFGNRT----TVSGSNAIPLGLTTR
        RIGRTGRAGAKGTA TFFT EN+K ARDL+ IL EA Q + P L+ +A  SG GG    +   G RGG G       T + SNA PLG   R
Subjt:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRPQGHRGGFGNRT----TVSGSNAIPLGLTTR

Q5B0J9 ATP-dependent RNA helicase dbp23.2e-1555.06Show/hide
Query:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARF-RPQGHRGGFGNRTTVSGSNAIPLGLTTR
        RIGRTGRAGAKGTA TFFT +NAK ARDL+ IL EA Q + P L+ +   SG GG G  + R  G  GG G     + SNA PLG   R
Subjt:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARF-RPQGHRGGFGNRTTVSGSNAIPLGLTTR

Q5N7W4 DEAD-box ATP-dependent RNA helicase 301.6e-1966.27Show/hide
Query:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRPQGHRGGFGNRTTVSGSNAIPL
        RIGRTGRAGA GTAFTFFT  NAK +R+L+KILREAGQ+V PAL ++A S+   G G  FR +G RGGFGNR   SGSN+IP+
Subjt:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRPQGHRGGFGNRTTVSGSNAIPL

Q8W4R3 DEAD-box ATP-dependent RNA helicase 301.3e-2164.44Show/hide
Query:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSAL--ASSSGFGGSGA--RFRPQ--GHRGGFGNRTTVSGSNAIPLG
        RIGRTGRAGAKG AFTFFTH+NAK AR+L+KIL+EAGQ+V P LSAL  +S SG+GGSG    FRP+  G  GGFG++ + S SN +P G
Subjt:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSAL--ASSSGFGGSGA--RFRPQ--GHRGGFGNRTTVSGSNAIPLG

Arabidopsis top hitse value%identityAlignment
AT1G55150.1 DEA(D/H)-box RNA helicase family protein2.0e-1254.05Show/hide
Query:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSS-----GFGGSGARFRPQGHRGGF
        RIGRTGRAGAKGTA+TFFT  NA+ A++L  IL+EAGQ V+P L+++  S+     G GG    FR +G R G+
Subjt:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSS-----GFGGSGARFRPQGHRGGF

AT3G01540.1 DEAD box RNA helicase 14.1e-1048.1Show/hide
Query:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFG-------GSGARFRPQGHRGGFGNR
        RIGRTGRAGA G AFTFF  +++KHA DLIKIL  A Q V P +  +A+  G G       G  +  R +G   G+G R
Subjt:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFG-------GSGARFRPQGHRGGFGNR

AT3G01540.2 DEAD box RNA helicase 14.1e-1048.1Show/hide
Query:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFG-------GSGARFRPQGHRGGFGNR
        RIGRTGRAGA G AFTFF  +++KHA DLIKIL  A Q V P +  +A+  G G       G  +  R +G   G+G R
Subjt:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFG-------GSGARFRPQGHRGGFGNR

AT3G01540.3 DEAD box RNA helicase 14.1e-1048.1Show/hide
Query:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFG-------GSGARFRPQGHRGGFGNR
        RIGRTGRAGA G AFTFF  +++KHA DLIKIL  A Q V P +  +A+  G G       G  +  R +G   G+G R
Subjt:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFG-------GSGARFRPQGHRGGFGNR

AT5G63120.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein9.5e-2364.44Show/hide
Query:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSAL--ASSSGFGGSGA--RFRPQ--GHRGGFGNRTTVSGSNAIPLG
        RIGRTGRAGAKG AFTFFTH+NAK AR+L+KIL+EAGQ+V P LSAL  +S SG+GGSG    FRP+  G  GGFG++ + S SN +P G
Subjt:  RIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSAL--ASSSGFGGSGA--RFRPQ--GHRGGFGNRTTVSGSNAIPLG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTTGGTCACCAGATCCTACGAGTGCAGGGATAAGGATAGGCCGAACGGGTCGTGCTGGTGCAAAGGGAACTGCATTCACATTCTTTACTCATGAGAATGCGAAACACGC
CAGAGATCTTATAAAGATATTGCGAGAAGCAGGGCAAATTGTCACCCCTGCATTGTCTGCTTTAGCCTCCTCTAGTGGCTTTGGAGGTTCTGGCGCTAGATTCCGCCCTC
AAGGACACAGAGGCGGCTTTGGAAATCGAACAACGGTTTCGGGATCAAATGCGATCCCTCTTGGTTTGACAACAAGGCCTCGCTAG
mRNA sequenceShow/hide mRNA sequence
TTTTGGTCACCAGATCCTACGAGTGCAGGGATAAGGATAGGCCGAACGGGTCGTGCTGGTGCAAAGGGAACTGCATTCACATTCTTTACTCATGAGAATGCGAAACACGC
CAGAGATCTTATAAAGATATTGCGAGAAGCAGGGCAAATTGTCACCCCTGCATTGTCTGCTTTAGCCTCCTCTAGTGGCTTTGGAGGTTCTGGCGCTAGATTCCGCCCTC
AAGGACACAGAGGCGGCTTTGGAAATCGAACAACGGTTTCGGGATCAAATGCGATCCCTCTTGGTTTGACAACAAGGCCTCGCTAGTTTCGTGCAACTCTAAAAGAAGCT
AGATAAGTAATGTTTTTGATAAATGTGGACCATTTTCATTATGTAATATAGTTGACCTGTTTCTAGAGAAGCAACTCAGTATTGTTTGGCATGTGGGTACAACTGTACAT
AAAACCAGAATTCTGGTAGACACTGTTGAGATTGTTAGGATTAGGTTTGGTAGTTATGGAGTTGGTGAAGGGGATGAAAAAGGATATGCTTCTGACATTTGAAACCTAGA
TATTTAGTACTTATAGTCAATGAAACAATATATGTGATCCAAACGGACGTAAAATCATGATTTTGTTGGGGGTGGAGAAAGAAGGAAAGCTATGGCTTCGAAGGGACGTG
ATTGTCATCTGTCAATTTACTTTTTGATGTGATTTTTTCTTTATTTTGAATTTAAGTTGTGATTTGATTTT
Protein sequenceShow/hide protein sequence
FWSPDPTSAGIRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSGARFRPQGHRGGFGNRTTVSGSNAIPLGLTTRPR