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Lsi06G016080 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G016080
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptioncentromere protein X isoform X2
Genome locationchr06:26431146..26432610
RNA-Seq ExpressionLsi06G016080
SyntenyLsi06G016080
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0051382 - kinetochore assembly (biological process)
InterPro domainsIPR018552 - Centromere protein X


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589406.1 Protein JINGUBANG, partial [Cucurbita argyrosperma subsp. sororia]7.5e-2864Show/hide
Query:  MEESAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVDAGTSKKTRPM------------------SEAVQRAATI
        MEES F PDLIHAIFKLEWSRRSL                      EREKNE+ DAMDCEVDAGTSKK+RPM                  SEAVQRAATI
Subjt:  MEESAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVDAGTSKKTRPM------------------SEAVQRAATI

Query:  AEAEGISRIEATHLERILPQLLLDF
        AEAEGISRIEATHLERILPQLLLDF
Subjt:  AEAEGISRIEATHLERILPQLLLDF
XP_022921828.1 protein MHF2 homolog [Cucurbita moschata]7.5e-2864Show/hide
Query:  MEESAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVDAGTSKKTRPM------------------SEAVQRAATI
        MEES F PDLIHAIFKLEWSRRSL                      EREKNE+ DAMDCEVDAGTSKK+RPM                  SEAVQRAATI
Subjt:  MEESAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVDAGTSKKTRPM------------------SEAVQRAATI

Query:  AEAEGISRIEATHLERILPQLLLDF
        AEAEGISRIEATHLERILPQLLLDF
Subjt:  AEAEGISRIEATHLERILPQLLLDF
XP_023516676.1 protein MHF2 homolog [Cucurbita pepo subsp. pepo]7.5e-2864Show/hide
Query:  MEESAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVDAGTSKKTRPM------------------SEAVQRAATI
        MEES F PDLIHAIFKLEWSRRSL                      EREKNE+ DAMDCEVDAGTSKK+RPM                  SEAVQRAATI
Subjt:  MEESAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVDAGTSKKTRPM------------------SEAVQRAATI

Query:  AEAEGISRIEATHLERILPQLLLDF
        AEAEGISRIEATHLERILPQLLLDF
Subjt:  AEAEGISRIEATHLERILPQLLLDF
XP_038879195.1 protein MHF2 homolog isoform X1 [Benincasa hispida]3.6e-3065.6Show/hide
Query:  MEESAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVDAGTSKKTRPM------------------SEAVQRAATI
        MEE+AFHPDLIHAIFKLEWSRRSL                      EREKNENPDAMDCEVDAGTSKK+RPM                  SEAVQRAATI
Subjt:  MEESAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVDAGTSKKTRPM------------------SEAVQRAATI

Query:  AEAEGISRIEATHLERILPQLLLDF
        AEAEGI+RIEATHLERILPQLLLDF
Subjt:  AEAEGISRIEATHLERILPQLLLDF
XP_038879196.1 protein MHF2 homolog isoform X2 [Benincasa hispida]1.6e-3376.64Show/hide
Query:  MEESAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVDAGTSKKTRPMSEAVQRAATIAEAEGISRIEATHLERIL
        MEE+AFHPDLIHAIFKLEWSRRSL                      EREKNENPDAMDCEVDAGTSKK+RPMSEAVQRAATIAEAEGI+RIEATHLERIL
Subjt:  MEESAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVDAGTSKKTRPMSEAVQRAATIAEAEGISRIEATHLERIL

Query:  PQLLLDF
        PQLLLDF
Subjt:  PQLLLDF
TrEMBL top hitse value%identityAlignment
A0A0A0LU58 Uncharacterized protein8.9e-2762.5Show/hide
Query:  MEESAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNE-NPDAMDCEVD--AGTSKKTRPM------------------SEAVQRA
        MEE+ FHPDLIHAIFKLEWSRRSL                      EREKNE NPDAMDCEVD  AGTSKK+RPM                  SEAVQRA
Subjt:  MEESAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNE-NPDAMDCEVD--AGTSKKTRPM------------------SEAVQRA

Query:  ATIAEAEGISRIEATHLERILPQLLLDF
        ATIAEAEGISRIE THLER+LPQLLLDF
Subjt:  ATIAEAEGISRIEATHLERILPQLLLDF
A0A1S3CLJ8 centromere protein X isoform X11.4e-2761.72Show/hide
Query:  MEESAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVD--AGTSKKTRPMS-------------------EAVQRA
        MEE+ FHPDLIHAIFKLEWSRRSL                      EREKNENPDAMDCEVD  AGTSKK+RPMS                   EAVQRA
Subjt:  MEESAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVD--AGTSKKTRPMS-------------------EAVQRA

Query:  ATIAEAEGISRIEATHLERILPQLLLDF
        ATIAEAEGI RIE THLER+LPQLLLDF
Subjt:  ATIAEAEGISRIEATHLERILPQLLLDF
A0A1S3CLK5 centromere protein X isoform X21.1e-2762.2Show/hide
Query:  MEESAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVD--AGTSKKTRPM------------------SEAVQRAA
        MEE+ FHPDLIHAIFKLEWSRRSL                      EREKNENPDAMDCEVD  AGTSKK+RPM                  SEAVQRAA
Subjt:  MEESAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVD--AGTSKKTRPM------------------SEAVQRAA

Query:  TIAEAEGISRIEATHLERILPQLLLDF
        TIAEAEGI RIE THLER+LPQLLLDF
Subjt:  TIAEAEGISRIEATHLERILPQLLLDF
A0A6J1E4X1 protein MHF2 homolog3.6e-2864Show/hide
Query:  MEESAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVDAGTSKKTRPM------------------SEAVQRAATI
        MEES F PDLIHAIFKLEWSRRSL                      EREKNE+ DAMDCEVDAGTSKK+RPM                  SEAVQRAATI
Subjt:  MEESAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVDAGTSKKTRPM------------------SEAVQRAATI

Query:  AEAEGISRIEATHLERILPQLLLDF
        AEAEGISRIEATHLERILPQLLLDF
Subjt:  AEAEGISRIEATHLERILPQLLLDF
A0A6J1JD93 protein MHF2 homolog8.0e-2863.2Show/hide
Query:  MEESAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVDAGTSKKTRPM------------------SEAVQRAATI
        MEES F PDLIHAIFKLEW+RRSL                      EREKNE+ DAMDCEVDAGTSKK+RPM                  SEAVQRAATI
Subjt:  MEESAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVDAGTSKKTRPM------------------SEAVQRAATI

Query:  AEAEGISRIEATHLERILPQLLLDF
        AEAEGISRIEATHLERILPQLLLDF
Subjt:  AEAEGISRIEATHLERILPQLLLDF
SwissProt top hitse value%identityAlignment
Q8L7N3 Protein MHF2 homolog1.2e-1545.9Show/hide
Query:  SAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVDAGTSKKTRP------------------MSEAVQRAATIAEA
        + F  DLIHAIFK  W+RR                      F ERE+++  DA + EV  GT+KK R                   +SEAVQRAA IAEA
Subjt:  SAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVDAGTSKKTRP------------------MSEAVQRAATIAEA

Query:  EGISRIEATHLERILPQLLLDF
        EG+ +IEATHLERILPQLLLDF
Subjt:  EGISRIEATHLERILPQLLLDF
Arabidopsis top hitse value%identityAlignment
AT1G78790.1 unknown protein8.2e-1745.9Show/hide
Query:  SAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVDAGTSKKTRP------------------MSEAVQRAATIAEA
        + F  DLIHAIFK  W+RR                      F ERE+++  DA + EV  GT+KK R                   +SEAVQRAA IAEA
Subjt:  SAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVDAGTSKKTRP------------------MSEAVQRAATIAEA

Query:  EGISRIEATHLERILPQLLLDF
        EG+ +IEATHLERILPQLLLDF
Subjt:  EGISRIEATHLERILPQLLLDF
AT1G78790.2 unknown protein6.1e-2053.85Show/hide
Query:  SAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVDAGTSKKTRPMSEAVQRAATIAEAEGISRIEATHLERILPQL
        + F  DLIHAIFK  W+RR                      F ERE+++  DA + EV  GT+KK R  SEAVQRAA IAEAEG+ +IEATHLERILPQL
Subjt:  SAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVDAGTSKKTRPMSEAVQRAATIAEAEGISRIEATHLERILPQL

Query:  LLDF
        LLDF
Subjt:  LLDF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAGAGCGCATTTCATCCTGATCTGATTCACGCCATCTTCAAGCTCGAGTGGAGCAGAAGATCACTTGGTTCGGACTTAGGATCATTCTCTCCTTCTTTCTTCAT
TTTCCGCTTTGTTGCTCGCATTTTTTCAGAGCGCGAGAAAAACGAGAATCCGGATGCTATGGATTGTGAGGTTGACGCTGGAACATCCAAGAAAACCAGGCCAATGTCAG
AGGCTGTGCAGCGTGCTGCAACAATTGCTGAAGCAGAAGGTATTAGCAGAATTGAAGCCACTCATTTGGAGAGAATTCTTCCGCAATTACTACTGGATTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATAGTTATACATTGTATTTTGAAGATTGAAGGTTCAAATCTCGTGGGCCTAATTGTCGTACTAAATAAAAGACTTTTTGAAACATTTTTTTTTCAAAAACTTCAAAACCC
AACCGGACACATGAGAAGATGAAGAGATGGGCTTTAGGCAGGCCTTAAATTTGGGCCCAACTCAAGCCCAAATGAAGGGCATAAAAGGCATAGAAGCTCAAATGGACGCA
TATGAAAGGCTAAAACTAGCGGCAAACAGAAAACAAATCAAAACGCTTGGTGCGGGAGAAGTTGAAATTTGAAACTTGCTTCTTACAGACTCGCAGTCGCCAGTTTCGCT
CGCCATGGAAGAGAGCGCATTTCATCCTGATCTGATTCACGCCATCTTCAAGCTCGAGTGGAGCAGAAGATCACTTGGTTCGGACTTAGGATCATTCTCTCCTTCTTTCT
TCATTTTCCGCTTTGTTGCTCGCATTTTTTCAGAGCGCGAGAAAAACGAGAATCCGGATGCTATGGATTGTGAGGTTGACGCTGGAACATCCAAGAAAACCAGGCCAATG
TCAGAGGCTGTGCAGCGTGCTGCAACAATTGCTGAAGCAGAAGGTATTAGCAGAATTGAAGCCACTCATTTGGAGAGAATTCTTCCGCAATTACTACTGGATTTTTGA
Protein sequenceShow/hide protein sequence
MEESAFHPDLIHAIFKLEWSRRSLGSDLGSFSPSFFIFRFVARIFSEREKNENPDAMDCEVDAGTSKKTRPMSEAVQRAATIAEAEGISRIEATHLERILPQLLLDF