; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi06G016140 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi06G016140
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionElongator complex protein 3
Genome locationchr06:26474889..26475386
RNA-Seq ExpressionLsi06G016140
SyntenyLsi06G016140
Gene Ontology termsGO:2000025 - regulation of leaf formation (biological process)
GO:0002926 - tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation (biological process)
GO:0090708 - specification of plant organ axis polarity (biological process)
GO:0051301 - cell division (biological process)
GO:0035265 - organ growth (biological process)
GO:0009294 - DNA mediated transformation (biological process)
GO:0010928 - regulation of auxin mediated signaling pathway (biological process)
GO:0000791 - euchromatin (cellular component)
GO:0033588 - Elongator holoenzyme complex (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0008080 - N-acetyltransferase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
GO:0106261 - tRNA uridine(34) acetyltransferase activity (molecular function)
GO:0000049 - tRNA binding (molecular function)
InterPro domainsIPR034687 - Elongator complex protein 3-like
IPR039661 - ELP3/YhcC


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057795.1 elongator complex protein 3 [Cucumis melo var. makuwa]4.4e-8098.1Show/hide
Query:  MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT
        MATA+VAE NRKLPRPGRGGFE HGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT
Subjt:  MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT

Query:  ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
        ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Subjt:  ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR

XP_004138068.1 elongator complex protein 3 [Cucumis sativus]1.3e-7997.47Show/hide
Query:  MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT
        MATA+VAE NRKLPRPGRGGFE HGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDRE LLPKLRAKPVRT
Subjt:  MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT

Query:  ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
        ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Subjt:  ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR

XP_008464479.1 PREDICTED: elongator complex protein 3 [Cucumis melo]4.4e-8098.1Show/hide
Query:  MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT
        MATA+VAE NRKLPRPGRGGFE HGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT
Subjt:  MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT

Query:  ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
        ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Subjt:  ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR

XP_022134894.1 elongator complex protein 3 [Momordica charantia]1.8e-81100Show/hide
Query:  MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT
        MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT
Subjt:  MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT

Query:  ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
        ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Subjt:  ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR

XP_038880764.1 elongator complex protein 3 [Benincasa hispida]2.6e-8098.1Show/hide
Query:  MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT
        MATA+VAESNRKLPRPGRGGFE HGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGL+RAPKLVEMIAALPESDREALLPKLRAKPVRT
Subjt:  MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT

Query:  ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
        ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Subjt:  ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR

TrEMBL top hitse value%identityAlignment
A0A1S3CM22 Elongator complex protein 32.2e-8098.1Show/hide
Query:  MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT
        MATA+VAE NRKLPRPGRGGFE HGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT
Subjt:  MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT

Query:  ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
        ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Subjt:  ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR

A0A5A7UW35 Elongator complex protein 32.2e-8098.1Show/hide
Query:  MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT
        MATA+VAE NRKLPRPGRGGFE HGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT
Subjt:  MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT

Query:  ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
        ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Subjt:  ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR

A0A5D3BHH9 Elongator complex protein 32.2e-8098.1Show/hide
Query:  MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT
        MATA+VAE NRKLPRPGRGGFE HGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT
Subjt:  MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT

Query:  ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
        ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Subjt:  ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR

A0A6J1C012 Elongator complex protein 38.7e-82100Show/hide
Query:  MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT
        MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT
Subjt:  MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT

Query:  ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
        ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Subjt:  ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR

A0A6J1KT98 Elongator complex protein 36.3e-8098.1Show/hide
Query:  MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT
        MATAVVAES RKLPRPGRGGFE HGFSEEE RVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT
Subjt:  MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRT

Query:  ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
        ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Subjt:  ASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR

SwissProt top hitse value%identityAlignment
Q5ZHS1 Elongator complex protein 35.7e-4664.03Show/hide
Query:  GFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHI
        G +    S  E  +  IA+I+  +++   +G++V+LN LK+    KYGL+  P+LV++IAA+P   R+AL+PKL+AKP+RTASGIAVVAVM KPHRCPHI
Subjt:  GFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHI

Query:  ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
          TGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Subjt:  ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR

Q7X7L3 Elongator complex protein 32.6e-6780.24Show/hide
Query:  MATAVVA--------ESNRKLPRPGRGGFE-AHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLP
        MATAV A        +  R+ P PGRGG     G SEEEARVRAIAEIV++M +LSR+G++VDLNALKSAACR+YGLARAPKLVEMIAA+PE+DR ALLP
Subjt:  MATAVVA--------ESNRKLPRPGRGGFE-AHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLP

Query:  KLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
        +LRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Subjt:  KLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR

Q93ZR1 Elongator complex protein 39.7e-7081.76Show/hide
Query:  MATAVVAESN-RKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVR
        MATAVV     +K PRPG+GG++  G +EEEARVRAI+EIV++M++ S + +NVDLNA+K+AACRKYGLARAPKLVEMIAALP+S+RE LLPKLRAKPVR
Subjt:  MATAVVAESN-RKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVR

Query:  TASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
        TASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Subjt:  TASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR

Q9CZX0 Elongator complex protein 31.7e-4565.91Show/hide
Query:  SEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNIC
        S  E  +  I +++  +V+   +G++VDLN +K+    KYGLA  P+LV++IAA+P   R+ L+PKL+AKPVRTASGIAVVAVM KPHRCPHI+ TGNIC
Subjt:  SEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNIC

Query:  VYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
        +YCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Subjt:  VYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR

Q9VQZ6 Elongator complex protein 32.2e-4565.67Show/hide
Query:  GFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGN
        G S +E +V  I EI+  ++      ++V+LN +KS    KYGL  +P+LV++IAA+P+  ++ LLPKLRAKP+RTASGIAVVAVM KPHRCPHI  TGN
Subjt:  GFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGN

Query:  ICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
        ICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIR+R
Subjt:  ICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR

Arabidopsis top hitse value%identityAlignment
AT5G50320.1 radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein6.9e-7181.76Show/hide
Query:  MATAVVAESN-RKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVR
        MATAVV     +K PRPG+GG++  G +EEEARVRAI+EIV++M++ S + +NVDLNA+K+AACRKYGLARAPKLVEMIAALP+S+RE LLPKLRAKPVR
Subjt:  MATAVVAESN-RKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVR

Query:  TASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
        TASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Subjt:  TASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACTGCAGTGGTGGCGGAATCAAATCGGAAACTGCCTCGACCTGGCCGGGGCGGCTTCGAAGCTCATGGATTTTCCGAGGAAGAAGCCCGAGTTCGTGCCATTGC
TGAGATTGTTAACTCCATGGTTGACCTTTCACGTAAAGGGCAAAATGTCGATCTGAACGCTCTGAAATCCGCCGCCTGCCGGAAGTATGGCCTTGCACGGGCCCCAAAGC
TCGTCGAAATGATCGCAGCGCTTCCTGAGTCGGACCGCGAGGCCCTGTTACCGAAGCTTCGAGCCAAGCCGGTTCGAACAGCCTCCGGTATTGCAGTCGTAGCCGTGATG
TCTAAGCCGCATCGATGCCCTCATATTGCTACGACGGGGAATATTTGTGTATACTGCCCCGGAGGACCTGATTCGGACTTTGAGTACAGTACTCAATCTTACACTGGTTA
TGAGCCTACAAGCATGCGTGCAATTCGTGCAAGGTTGGTTGTAACTTGTAACTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACTGCAGTGGTGGCGGAATCAAATCGGAAACTGCCTCGACCTGGCCGGGGCGGCTTCGAAGCTCATGGATTTTCCGAGGAAGAAGCCCGAGTTCGTGCCATTGC
TGAGATTGTTAACTCCATGGTTGACCTTTCACGTAAAGGGCAAAATGTCGATCTGAACGCTCTGAAATCCGCCGCCTGCCGGAAGTATGGCCTTGCACGGGCCCCAAAGC
TCGTCGAAATGATCGCAGCGCTTCCTGAGTCGGACCGCGAGGCCCTGTTACCGAAGCTTCGAGCCAAGCCGGTTCGAACAGCCTCCGGTATTGCAGTCGTAGCCGTGATG
TCTAAGCCGCATCGATGCCCTCATATTGCTACGACGGGGAATATTTGTGTATACTGCCCCGGAGGACCTGATTCGGACTTTGAGTACAGTACTCAATCTTACACTGGTTA
TGAGCCTACAAGCATGCGTGCAATTCGTGCAAGGTTGGTTGTAACTTGTAACTTCTAA
Protein sequenceShow/hide protein sequence
MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVM
SKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARLVVTCNF