CuGenDBv2

Gene ID	Lsi06G016470
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	mediator of RNA polymerase II transcription subunit 30
Genome location	chr06:26759445..26764820
RNA-Seq Expression	Lsi06G016470
Synteny	Lsi06G016470
Gene Ontology terms	GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR034568 - Mediator of RNA polymerase II transcription subunit 30

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004138044.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus]

4.2e-86

95.24

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Query:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG
        MEEK TNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT STATTATSGLTIASP+GPSSHS NGVVNGDASSESTSHHTD+S  G
Subjt:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADL
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYES TSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVAD+
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADL

XP_008464424.1 PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]

9.4e-86

95.24

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Query:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG
        MEEK T VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT STATTATSGLTIASPNGPSSHS NGVVNGDASSESTSHHTD+SS G
Subjt:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADL
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYES TS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVAD+
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADL

XP_022134927.1 mediator of RNA polymerase II transcription subunit 30 [Momordica charantia]

1.5e-78

87.83

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Query:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG
        ME+KPT++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTT STAT+A   L+IASPNGPS HSTNGVVNGDASSEST+HH DTSS G
Subjt:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADL
        G+GSGGALEEARVRY NSVLALRAILAAIP+SQ AKAYES TSGHASPADQSEIDKLEQHL NLRKELV KNLH+KLLIDQLRDLVAD+
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADL

XP_022921424.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata]

7.2e-86

94.18

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Query:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG
        MEEKPTNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT STATT TSGLTIASPN PSSHSTNGVVNGDASSEST+HHTDTSS G
Subjt:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADL
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKA+ES TSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLIDQLR+LVAD+
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADL

XP_038879540.1 mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida]

5.7e-83

93.65

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Query:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG
        MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT ST TTATSGL IASPNGPSSHS NGVVNGDASSESTSHHTD+SS G
Subjt:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADL
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKA AYES TSG  SPADQSEIDKLEQHLS+LRKELVVKNLHIKLLIDQLRDLVAD+
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LNW4 Uncharacterized protein

2.0e-86

95.24

Show/hide

Query:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG
        MEEK TNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT STATTATSGLTIASP+GPSSHS NGVVNGDASSESTSHHTD+S  G
Subjt:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADL
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYES TSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVAD+
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADL

A0A1S3CMZ7 mediator of RNA polymerase II transcription subunit 30

4.6e-86

95.24

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Query:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG
        MEEK T VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT STATTATSGLTIASPNGPSSHS NGVVNGDASSESTSHHTD+SS G
Subjt:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADL
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYES TS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVAD+
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADL

A0A5A7USU3 Mediator of RNA polymerase II transcription subunit 30

4.6e-86

95.24

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Query:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG
        MEEK T VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT STATTATSGLTIASPNGPSSHS NGVVNGDASSESTSHHTD+SS G
Subjt:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADL
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYES TS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVAD+
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADL

A0A6J1E0F5 mediator of RNA polymerase II transcription subunit 30

3.5e-86

94.18

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Query:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG
        MEEKPTNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT STATT TSGLTIASPN PSSHSTNGVVNGDASSEST+HHTDTSS G
Subjt:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADL
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKA+ES TSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLIDQLR+LVAD+
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADL

A0A6J1JFZ2 mediator of RNA polymerase II transcription subunit 30

3.5e-86

94.18

Show/hide

Query:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG
        MEEKPTNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT STATT TSGLTIASPN PSSHSTNGVVNGDASSEST+HHTDTSS G
Subjt:  MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCG

Query:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADL
        GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKA+ES TSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLIDQLR+LVAD+
Subjt:  GSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADL

SwissProt top hits

e value

%identity

Alignment

Q9FMV4 Mediator of RNA polymerase II transcription subunit 30

3.8e-37

54.7

Show/hide

Query:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWST--TPSTATTATSGLTIASPNGPSSHSTNGVVNGDASS-ESTSHHTDTSSCGGSGSGG--AL
        TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST  TPS+A T T        NG      + +V+ DA++ + TSHH++++  GG G  G   L
Subjt:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWST--TPSTATTATSGLTIASPNGPSSHSTNGVVNGDASS-ESTSHHTDTSSCGGSGSGG--AL

Query:  EEARVRYKNSVLALRAILAAIPNSQKAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADL
        +EA +RYKNSV +LRA+LAAIPNSQKAKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+AD+
Subjt:  EEARVRYKNSVLALRAILAAIPNSQKAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADL

Arabidopsis top hits

e value

%identity

Alignment

AT5G63480.1 unknown protein

2.7e-38

54.7

Show/hide

Query:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWST--TPSTATTATSGLTIASPNGPSSHSTNGVVNGDASS-ESTSHHTDTSSCGGSGSGG--AL
        TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST  TPS+A T T        NG      + +V+ DA++ + TSHH++++  GG G  G   L
Subjt:  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWST--TPSTATTATSGLTIASPNGPSSHSTNGVVNGDASS-ESTSHHTDTSSCGGSGSGG--AL

Query:  EEARVRYKNSVLALRAILAAIPNSQKAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADL
        +EA +RYKNSV +LRA+LAAIPNSQKAKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+AD+
Subjt:  EEARVRYKNSVLALRAILAAIPNSQKAKAYESSTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADL

Sequences

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CDS sequence

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ATGAGACTCTTCACTCGGGCCAATGATTGTGCATTTTTCACAACAATGATGTGCGATTGTAAGGAGAAACCGGATGCTACCACTCTGATTATGCATTTGAAGAAGTACAG
ACGAAACAAATTCATAGAAAGCGACATTGTAGAGGAGAGTGATATGTATGTAATTGATTCAGATTGCGACCCCATTCTTCATTTCGCGCTAGCAACACAGGAGCATCTGC
TTTTCTTCTGGAAACATACAATGGAAGAGAAACCCACTAATGTTTTGGCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAAGAAACCATT
GAATCCGCTTTCCAGATCCTCTACTCCATGAATGACGAACTCTGCAATCCCACATTATGGTCCACCACTCCTTCAACGGCAACAACGGCTACTTCTGGTTTAACAATTGC
CAGCCCAAATGGTCCATCTTCACATTCCACTAATGGAGTTGTAAACGGCGACGCAAGTTCCGAAAGCACTAGCCATCACACCGACACCAGCAGTTGCGGAGGCAGCGGTA
GTGGGGGAGCCCTCGAGGAGGCCCGTGTTCGCTACAAGAATTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGCAAAAGCGTATGAATCG
AGTACGAGTGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTGTGGTTAAGAATTTGCATATCAAGCT
TCTGATAGATCAACTACGAGATCTTGTTGCTGATTTGTGGATTGAGTATCTTGTAGTAAGGGAAGATCTCATATCCACAATGGCAGATTCATCTGCACCCAACTTGATGG
CCTCTTTGCTTGCTCTGATGAACCTTGAAACAGCTCCTCTAGGAAACTACTCAGGAAATGGTCACCATTCAGAACAGCAGCTAACTGTACAACCTCGCTCTGAAACTCAG
ATAATCCACTGTTTTCCTTTGCTACTGTTTTCCTCAAAGGTGTCACTTCGGGCAAGATTAACTCTATTTACAATTGGGAAAATGTCGATGGGTCTTAACCAGTACAGAGT
GATGATATACCTGGGCAGTCGGTTCGTGGCGAGGTTAACTGGTCTACAATGTCCTCAAATGTCCCAGCCCAAGCATCTCTGTGAGTCAGGAAGTTTGAAGCCTTTCATGA
CAGTTTCAGAGAGATTTGGTGACATTGAAAGAGCCTGTTCCACAAAGCCAGACATGGAAGGAATGGAATTAGAGCCAAATACCTGCTGCAACACGTCTTCAAATGAATGG
CCCGGATCCGGATCTACAAACTCGGCATCATCAGAGAAGCAAATCGTTTCAGGGTTGGGATTCTTGGTTGAAACAGGGTTGCATTCGTCTCCAGTGACGCCATTGATTTG
TTGGTCGATGTATTTCTTCATCCATCCAATCATGTGA

mRNA sequence

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Protein sequence

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MRLFTRANDCAFFTTMMCDCKEKPDATTLIMHLKKYRRNKFIESDIVEESDMYVIDSDCDPILHFALATQEHLLFFWKHTMEEKPTNVLALPQTTQELAMEGIKHLEETI
ESAFQILYSMNDELCNPTLWSTTPSTATTATSGLTIASPNGPSSHSTNGVVNGDASSESTSHHTDTSSCGGSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYES
STSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADLWIEYLVVREDLISTMADSSAPNLMASLLALMNLETAPLGNYSGNGHHSEQQLTVQPRSETQ
IIHCFPLLLFSSKVSLRARLTLFTIGKMSMGLNQYRVMIYLGSRFVARLTGLQCPQMSQPKHLCESGSLKPFMTVSERFGDIERACSTKPDMEGMELEPNTCCNTSSNEW
PGSGSTNSASSEKQIVSGLGFLVETGLHSSPVTPLICWSMYFFIHPIM

Lsi06G016470 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome