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Lsi07G000210 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G000210
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCiliary neurotrophic factor
Genome locationchr07:266209..269176
RNA-Seq ExpressionLsi07G000210
SyntenyLsi07G000210
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044571.1 uncharacterized protein E6C27_scaffold46G003210 [Cucumis melo var. makuwa]1.2e-6179.67Show/hide
Query:  MELISLAIRRLMEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETDLEPQSE-NVERNGSIVKTEKEIVKELKEV
        MELISLAIRRLMEEN N T SHRSS    D DD+QLLS+LLS+VESTREEQRLNH    S+QED +IIET+LE + E NVER+   VKTE EIVKELKEV
Subjt:  MELISLAIRRLMEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETDLEPQSE-NVERNGSIVKTEKEIVKELKEV

Query:  KRQNFITHCLVSAMIILTVAWQISEVSFILKLRDG-LSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPEFD
        K+QNF+THCLVSAMIILTVAWQISEVSFILKLRDG LSNPFKSLGTILKRKTTSAIQ QIEATELP LN+PA+PHV+LP+FD
Subjt:  KRQNFITHCLVSAMIILTVAWQISEVSFILKLRDG-LSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPEFD

KAE8649098.1 hypothetical protein Csa_015237 [Cucumis sativus]1.3e-6079.89Show/hide
Query:  MELISLAIRRLMEENDNSTASHRSS--GAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETDLEPQSE-NVERNGSIVKTEKEIVKELK
        MELISLAIRRLMEEN + T SHRSS   A  D DD+QLLSRLLS+VESTR EQRLNH    S+QED +IIET+LE + E NVER+   +KTE EIVKELK
Subjt:  MELISLAIRRLMEENDNSTASHRSS--GAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETDLEPQSE-NVERNGSIVKTEKEIVKELK

Query:  EVKRQNFITHCLVSAMIILTVAWQISEVSFILKLRDG-LSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPEFD
        EVK+QNFITHCLVSAMIILTVAWQISEVSFILKLRDG LSNPFKSL TILKRKTTSAIQ QIEATELPHLN+PALPHVTLP+FD
Subjt:  EVKRQNFITHCLVSAMIILTVAWQISEVSFILKLRDG-LSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPEFD

XP_004152113.1 uncharacterized protein LOC101214522 [Cucumis sativus]9.0e-6279.69Show/hide
Query:  MAEAAE-EMELISLAIRRLMEENDNSTASHRSS--GAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETDLEPQSE-NVERNGSIVKTE
        MAEAA  EMELISLAIRRLMEEN + T SHRSS   A  D DD+QLLSRLLS+VESTR EQRLNH    S+QED +IIET+LE + E NVER+   +KTE
Subjt:  MAEAAE-EMELISLAIRRLMEENDNSTASHRSS--GAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETDLEPQSE-NVERNGSIVKTE

Query:  KEIVKELKEVKRQNFITHCLVSAMIILTVAWQISEVSFILKLRDG-LSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPEFD
         EIVKELKEVK+QNFITHCLVSAMIILTVAWQISEVSFILKLRDG LSNPFKSL TILKRKTTSAIQ QIEATELPHLN+PALPHVTLP+FD
Subjt:  KEIVKELKEVKRQNFITHCLVSAMIILTVAWQISEVSFILKLRDG-LSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPEFD

XP_008454012.1 PREDICTED: uncharacterized protein LOC103494562 [Cucumis melo]6.3e-6379.57Show/hide
Query:  AAEEMELISLAIRRLMEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETDLEPQSE-NVERNGSIVKTEKEIVKE
        A EEMELISLAIRRLMEEN N T SHRSS    D DD+QLLS+LLS+VESTREEQRLNH    S+QED +IIET+LE + E NVER+   VKTE EIVKE
Subjt:  AAEEMELISLAIRRLMEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETDLEPQSE-NVERNGSIVKTEKEIVKE

Query:  LKEVKRQNFITHCLVSAMIILTVAWQISEVSFILKLRDG-LSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPEFD
        LKEVK+QNF+THCLVSAMIILTVAWQISEVSFILKLRDG LSNPFKSLGTILKRKTTSAIQ QIEATELP LN+PA+PHV+LP+FD
Subjt:  LKEVKRQNFITHCLVSAMIILTVAWQISEVSFILKLRDG-LSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPEFD

XP_038895500.1 uncharacterized protein LOC120083719 [Benincasa hispida]1.5e-7788.95Show/hide
Query:  MAEAAEEMELISLAIRRLMEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETDLEPQSENVERNG-SIVKTEKEI
        MAEA EEMELISLAIRRLMEE+DN TASHRSSGA  D  DLQLLSRLLSQVESTREEQRLNHSQIS+QQ+DEKIIET+LEPQSENVER+G + VK EK I
Subjt:  MAEAAEEMELISLAIRRLMEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETDLEPQSENVERNG-SIVKTEKEI

Query:  VKELKEVKRQNFITHCLVSAMIILTVAWQISEVSFILKLRDGLSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPEFDLE
        VKELKEVKRQNFITHCLVSAMIILTVAWQ+SEVSFILKLR+GLSNPFKSLGTILKRKTTSAIQ QIEATELPHLNMPALPHV LPEFDL+
Subjt:  VKELKEVKRQNFITHCLVSAMIILTVAWQISEVSFILKLRDGLSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPEFDLE

TrEMBL top hitse value%identityAlignment
A0A0A0KTW6 Uncharacterized protein4.4e-6279.69Show/hide
Query:  MAEAAE-EMELISLAIRRLMEENDNSTASHRSS--GAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETDLEPQSE-NVERNGSIVKTE
        MAEAA  EMELISLAIRRLMEEN + T SHRSS   A  D DD+QLLSRLLS+VESTR EQRLNH    S+QED +IIET+LE + E NVER+   +KTE
Subjt:  MAEAAE-EMELISLAIRRLMEENDNSTASHRSS--GAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETDLEPQSE-NVERNGSIVKTE

Query:  KEIVKELKEVKRQNFITHCLVSAMIILTVAWQISEVSFILKLRDG-LSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPEFD
         EIVKELKEVK+QNFITHCLVSAMIILTVAWQISEVSFILKLRDG LSNPFKSL TILKRKTTSAIQ QIEATELPHLN+PALPHVTLP+FD
Subjt:  KEIVKELKEVKRQNFITHCLVSAMIILTVAWQISEVSFILKLRDG-LSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPEFD

A0A1S3BXR6 uncharacterized protein LOC1034945623.0e-6379.57Show/hide
Query:  AAEEMELISLAIRRLMEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETDLEPQSE-NVERNGSIVKTEKEIVKE
        A EEMELISLAIRRLMEEN N T SHRSS    D DD+QLLS+LLS+VESTREEQRLNH    S+QED +IIET+LE + E NVER+   VKTE EIVKE
Subjt:  AAEEMELISLAIRRLMEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETDLEPQSE-NVERNGSIVKTEKEIVKE

Query:  LKEVKRQNFITHCLVSAMIILTVAWQISEVSFILKLRDG-LSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPEFD
        LKEVK+QNF+THCLVSAMIILTVAWQISEVSFILKLRDG LSNPFKSLGTILKRKTTSAIQ QIEATELP LN+PA+PHV+LP+FD
Subjt:  LKEVKRQNFITHCLVSAMIILTVAWQISEVSFILKLRDG-LSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPEFD

A0A5A7TSP6 Uncharacterized protein5.7e-6279.67Show/hide
Query:  MELISLAIRRLMEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETDLEPQSE-NVERNGSIVKTEKEIVKELKEV
        MELISLAIRRLMEEN N T SHRSS    D DD+QLLS+LLS+VESTREEQRLNH    S+QED +IIET+LE + E NVER+   VKTE EIVKELKEV
Subjt:  MELISLAIRRLMEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETDLEPQSE-NVERNGSIVKTEKEIVKELKEV

Query:  KRQNFITHCLVSAMIILTVAWQISEVSFILKLRDG-LSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPEFD
        K+QNF+THCLVSAMIILTVAWQISEVSFILKLRDG LSNPFKSLGTILKRKTTSAIQ QIEATELP LN+PA+PHV+LP+FD
Subjt:  KRQNFITHCLVSAMIILTVAWQISEVSFILKLRDG-LSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPEFD

A0A5D3CZN3 Uncharacterized protein1.6e-5678.36Show/hide
Query:  MEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETDLEPQSE-NVERNGSIVKTEKEIVKELKEVKRQNFITHCLV
        MEEN N T SHRSS    D DD+QLLS+LLS+VESTREEQRLNH    S+QED +IIET+LE + E NVER+   VKTE EIVKELKEVK+QNF+THCLV
Subjt:  MEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETDLEPQSE-NVERNGSIVKTEKEIVKELKEVKRQNFITHCLV

Query:  SAMIILTVAWQISEVSFILKLRDG-LSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPEFD
        SAMIILTVAWQISEVSFILKLRDG LSNPFKSLGTILKRKTTSAIQ QIEATELP LN+PA+PHV+LP+FD
Subjt:  SAMIILTVAWQISEVSFILKLRDG-LSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPEFD

A0A6J1IS75 uncharacterized protein LOC1114794852.0e-5169.31Show/hide
Query:  MAE-AAEEMELISLAIRRLMEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETDLEPQSENVERNGSIVKTEKEI
        MAE AAEEMELISLAIRRLMEE +N T SHRSSG     +DLQ LSRLLSQVESTRE+ R  HS     Q+D+KII+ +L               TEKEI
Subjt:  MAE-AAEEMELISLAIRRLMEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETDLEPQSENVERNGSIVKTEKEI

Query:  VKELKEVKRQNFITHCLVSAMIILTVAWQISEVSFILKLRDGLSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPEFDL
        VKE+KEVKRQNFITHCLVSAM++LTVAWQ+SEVSFILKLRDGLSNPFKSL  ILKR TTSAIQ +IEATEL     PALPHV LP+F L
Subjt:  VKELKEVKRQNFITHCLVSAMIILTVAWQISEVSFILKLRDGLSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPEFDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27300.1 unknown protein2.3e-1537.09Show/hide
Query:  EAAEEMELISLAIRRLMEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETDLEPQSENVERNGSIVKTEKEIVKE
        E++E++E +S AI +L+ E     AS        D DD   LS L+SQ+ES   + +     I+ ++E+++    D  P     E    + ++ +EI K+
Subjt:  EAAEEMELISLAIRRLMEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETDLEPQSENVERNGSIVKTEKEIVKE

Query:  LKEVKRQNFITHCLVSAMIILTVAWQISEVSFILKLRDGLSNPFKSLGTIL
        +K+VK+QN ITH L+SA IILT+ WQ+SE S I  L+D +S+P +S+G +L
Subjt:  LKEVKRQNFITHCLVSAMIILTVAWQISEVSFILKLRDGLSNPFKSLGTIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCTGTTGCCGGAGAAAGAAAGTGGAGAGGAAAAAGAAGAAAAAGAGATGGCGGAGGCGGCGGAGGAGATGGAGCTCATCAGCCTTGCGATTCGAAGACTGATGGA
GGAGAACGACAACAGCACCGCCTCTCATCGGAGCTCAGGCGCCGGCGGCGACGACGACGATCTGCAACTTCTTTCCCGATTACTCTCTCAGGTGGAATCAACAAGAGAAG
AACAGAGGCTCAACCACTCCCAAATCTCATCTCAGCAAGAGGATGAGAAAATAATTGAGACAGACTTAGAGCCTCAAAGTGAAAATGTGGAAAGAAATGGAAGCATAGTG
AAAACAGAGAAGGAGATCGTGAAAGAGCTAAAAGAAGTGAAGAGGCAGAATTTTATAACTCACTGCCTTGTTTCAGCAATGATTATCCTCACTGTTGCTTGGCAAATCTC
TGAGGTGTCTTTCATTTTGAAACTCAGAGATGGCTTGAGCAATCCATTCAAATCCCTGGGTACAATTCTGAAAAGGAAGACAACTTCAGCAATACAACAACAGATTGAAG
CTACTGAATTGCCTCATCTTAATATGCCTGCCCTACCTCATGTGACCCTACCAGAGTTTGACTTGGAAATTAATACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTCTGTTGCCGGAGAAAGAAAGTGGAGAGGAAAAAGAAGAAAAAGAGATGGCGGAGGCGGCGGAGGAGATGGAGCTCATCAGCCTTGCGATTCGAAGACTGATGGA
GGAGAACGACAACAGCACCGCCTCTCATCGGAGCTCAGGCGCCGGCGGCGACGACGACGATCTGCAACTTCTTTCCCGATTACTCTCTCAGGTGGAATCAACAAGAGAAG
AACAGAGGCTCAACCACTCCCAAATCTCATCTCAGCAAGAGGATGAGAAAATAATTGAGACAGACTTAGAGCCTCAAAGTGAAAATGTGGAAAGAAATGGAAGCATAGTG
AAAACAGAGAAGGAGATCGTGAAAGAGCTAAAAGAAGTGAAGAGGCAGAATTTTATAACTCACTGCCTTGTTTCAGCAATGATTATCCTCACTGTTGCTTGGCAAATCTC
TGAGGTGTCTTTCATTTTGAAACTCAGAGATGGCTTGAGCAATCCATTCAAATCCCTGGGTACAATTCTGAAAAGGAAGACAACTTCAGCAATACAACAACAGATTGAAG
CTACTGAATTGCCTCATCTTAATATGCCTGCCCTACCTCATGTGACCCTACCAGAGTTTGACTTGGAAATTAATACCTGATTTATTGCCACCAATCAATCATCCACAAAA
ACAGTAGCTTCATCAAGTTGTTCCATTGGATGTGCAGCTCTTTGATTTAATTTTCTAGGCACAACCAAACATTTCAACAACTTTGTATCTATATATTAGTTGTTTAAAGG
AAAAGATCACATTGAAACCCTGTATTTTTTGGGCGTAGAGTGCCGGTACTGCTTTCATTTCGGACATTCATATTTCAATTTCCATGACGTAGAAGTTTAAAGTTGTGATT
TTCGACATGTATAATACCATATAGTACACTTGCATTTGAATAGATAGAATAGGGACTATTGAGCAAATCACTTGAATTTGAAGAAAGTATCTATTTCATCAA
Protein sequenceShow/hide protein sequence
MILLPEKESGEEKEEKEMAEAAEEMELISLAIRRLMEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETDLEPQSENVERNGSIV
KTEKEIVKELKEVKRQNFITHCLVSAMIILTVAWQISEVSFILKLRDGLSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPEFDLEINT