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Lsi07G000300 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G000300
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description30S ribosomal protein S1 isoform X1
Genome locationchr07:343159..344447
RNA-Seq ExpressionLsi07G000300
SyntenyLsi07G000300
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018465.1 30S ribosomal protein S1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]4.5e-4780.3Show/hide
Query:  MPIFAA-TLGSLSASSFLSLFASIDASYSPSTFFILPQKSLSKRPSNFPPRVSLSGKPDPIAGVLDTSPSSPESLRRSRRSADWKAAREYLESGFIYEGR
        MPIFAA TLGSLSA SFLSL AS DAS S ST F+L  KS SKRPSNF  RVSLSGKP+PIAGVL++SPSSPES+RR+RRSADWK AREYL+SGFI++GR
Subjt:  MPIFAA-TLGSLSASSFLSLFASIDASYSPSTFFILPQKSLSKRPSNFPPRVSLSGKPDPIAGVLDTSPSSPESLRRSRRSADWKAAREYLESGFIYEGR

Query:  IEGSNAGGLLVRFYSLMGFLPFPQLSPSHSCR
        IEGSNAGGLLVRFYSL+GFLPFP LSP+HSC+
Subjt:  IEGSNAGGLLVRFYSLMGFLPFPQLSPSHSCR

XP_022955545.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111457527 [Cucurbita moschata]4.5e-4780.3Show/hide
Query:  MPIFAA-TLGSLSASSFLSLFASIDASYSPSTFFILPQKSLSKRPSNFPPRVSLSGKPDPIAGVLDTSPSSPESLRRSRRSADWKAAREYLESGFIYEGR
        MPIFAA TLGSLSA SFLSL AS DAS S ST F+L  KS SKRPSNF  RVSLSGKP+PIAGVL++SPSSPES+RR+RRSADWK AREYL+SGFI++GR
Subjt:  MPIFAA-TLGSLSASSFLSLFASIDASYSPSTFFILPQKSLSKRPSNFPPRVSLSGKPDPIAGVLDTSPSSPESLRRSRRSADWKAAREYLESGFIYEGR

Query:  IEGSNAGGLLVRFYSLMGFLPFPQLSPSHSCR
        IEGSNAGGLLVRFYSL+GFLPFP LSP+HSC+
Subjt:  IEGSNAGGLLVRFYSLMGFLPFPQLSPSHSCR

XP_022979820.1 uncharacterized protein LOC111479406 [Cucurbita maxima]2.0e-4779.55Show/hide
Query:  MPIFAA-TLGSLSASSFLSLFASIDASYSPSTFFILPQKSLSKRPSNFPPRVSLSGKPDPIAGVLDTSPSSPESLRRSRRSADWKAAREYLESGFIYEGR
        MPIFAA TLGSLSA SFLSL AS DAS+S S+ F+L  KS SKRPSNF  RVSLSGKP+PIAGVL++SPSSPES+RR+RRSADWK AREYL+SGFI++GR
Subjt:  MPIFAA-TLGSLSASSFLSLFASIDASYSPSTFFILPQKSLSKRPSNFPPRVSLSGKPDPIAGVLDTSPSSPESLRRSRRSADWKAAREYLESGFIYEGR

Query:  IEGSNAGGLLVRFYSLMGFLPFPQLSPSHSCR
        IEGSNAGGLLVRFYSL+GFLPFP LSP+HSC+
Subjt:  IEGSNAGGLLVRFYSLMGFLPFPQLSPSHSCR

XP_023526022.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111789621 [Cucurbita pepo subsp. pepo]5.9e-4780.3Show/hide
Query:  MPIFAA-TLGSLSASSFLSLFASIDASYSPSTFFILPQKSLSKRPSNFPPRVSLSGKPDPIAGVLDTSPSSPESLRRSRRSADWKAAREYLESGFIYEGR
        MPIFAA TLGSLSA SFL+L AS DAS S ST F L  KS SKRPSNF  RVSLSGKPDPIAGVL++SPSSPES+RR+RRSADWK AREYL+SGFI++GR
Subjt:  MPIFAA-TLGSLSASSFLSLFASIDASYSPSTFFILPQKSLSKRPSNFPPRVSLSGKPDPIAGVLDTSPSSPESLRRSRRSADWKAAREYLESGFIYEGR

Query:  IEGSNAGGLLVRFYSLMGFLPFPQLSPSHSCR
        IEGSNAGGLLVRFYSL+GFLPFP LSP+HSC+
Subjt:  IEGSNAGGLLVRFYSLMGFLPFPQLSPSHSCR

XP_038897871.1 30S ribosomal protein S1 homolog B [Benincasa hispida]3.6e-5272.56Show/hide
Query:  MPIFAATLGSLSASSFLSLFASIDASYSPSTFFILPQKSLSKRPSNFPPRVSLSGKPDPIAGVLDTSPSSPESLRRSRRSADWKAAREYLESGFIYEGRI
        MPIFAATLGS+ A SFLSL AS     S ST FILPQKS SKRPSNFP RVSLSGKPDPIAGVLDTSPSSPESLRR+RRSADWKAAREYL++GFIYEGRI
Subjt:  MPIFAATLGSLSASSFLSLFASIDASYSPSTFFILPQKSLSKRPSNFPPRVSLSGKPDPIAGVLDTSPSSPESLRRSRRSADWKAAREYLESGFIYEGRI

Query:  EGSNAGGLLVRFYSLMGFLPFPQLSPSHSCRG--SEVSKIIRKNYASLFTWSFLGINSMETKLL
        EGSNAGGLLVRFYSLMGFLPFPQLSPSHSC+     +  I +    SL +   +  +    KL+
Subjt:  EGSNAGGLLVRFYSLMGFLPFPQLSPSHSCRG--SEVSKIIRKNYASLFTWSFLGINSMETKLL

TrEMBL top hitse value%identityAlignment
A0A0A0KTX2 Uncharacterized protein3.5e-4567.07Show/hide
Query:  MPIFAATLGSLSASSFLSLFASI-DAS--YSPSTFFILPQKSLSKRPSNFPPRVSLSGKPDPIAGVLDTSPSSPESLRRSRRSADWKAAREYLESGFIYE
        MPIF AT+ S+SA SFLSL AS  DAS   S S+ FILP KS SKR S FP RVSLSGKPDPIAGVLDT   SPES+RR+RRSADWKAAREYL+SGFIYE
Subjt:  MPIFAATLGSLSASSFLSLFASI-DAS--YSPSTFFILPQKSLSKRPSNFPPRVSLSGKPDPIAGVLDTSPSSPESLRRSRRSADWKAAREYLESGFIYE

Query:  GRIEGSNAGGLLVRFYSLMGFLPFPQLSPSHSCRG--SEVSKIIRKNYASLFTWSFLGINSMETKLL
        GRIEGSNAGGLLVRFYSL+GFLPFPQLSPSHSC+     +  I +    SL +   +  +    KL+
Subjt:  GRIEGSNAGGLLVRFYSLMGFLPFPQLSPSHSCRG--SEVSKIIRKNYASLFTWSFLGINSMETKLL

A0A1S3BXL4 30S ribosomal protein S1 isoform X13.5e-4567.07Show/hide
Query:  MPIFAATLGSLSASSFLSLFASI-DAS--YSPSTFFILPQKSLSKRPSNFPPRVSLSGKPDPIAGVLDTSPSSPESLRRSRRSADWKAAREYLESGFIYE
        MPIF AT+ S+S  SFLSL AS  DAS   S S+  ILP KS SKRPS FP RVSLSGKPDPIAGVLDT   SPES+RR+RRSADWKAAREYL+SGFIYE
Subjt:  MPIFAATLGSLSASSFLSLFASI-DAS--YSPSTFFILPQKSLSKRPSNFPPRVSLSGKPDPIAGVLDTSPSSPESLRRSRRSADWKAAREYLESGFIYE

Query:  GRIEGSNAGGLLVRFYSLMGFLPFPQLSPSHSCR--GSEVSKIIRKNYASLFTWSFLGINSMETKLL
        GRIEGSNAGGLLVRFYSLMGFLPFPQLSPSHSC+     +  I +    SL +   +  +    KL+
Subjt:  GRIEGSNAGGLLVRFYSLMGFLPFPQLSPSHSCR--GSEVSKIIRKNYASLFTWSFLGINSMETKLL

A0A5A7TNY0 30S ribosomal protein S1 isoform X17.8e-4571.97Show/hide
Query:  MPIFAATLGSLSASSFLSLFASI-DAS--YSPSTFFILPQKSLSKRPSNFPPRVSLSGKPDPIAGVLDTSPSSPESLRRSRRSADWKAAREYLESGFIYE
        MPIF AT+ S+S  SFLSL AS  DAS   S S+  ILP KS SKRPS FP RVSLSGKPDPIAGVLDT   SPES+RR+RRSADWKAAREYL+SGFIYE
Subjt:  MPIFAATLGSLSASSFLSLFASI-DAS--YSPSTFFILPQKSLSKRPSNFPPRVSLSGKPDPIAGVLDTSPSSPESLRRSRRSADWKAAREYLESGFIYE

Query:  GRIEGSNAGGLLVRFYSLMGFLPFPQLSPSHSCRGSEVSKIIRKNYASLFTWSFLGI
        GRIEGSNAGGLLVRFYSLMGFLPFPQLSPSHSC+  E +K I ++ A   T S + +
Subjt:  GRIEGSNAGGLLVRFYSLMGFLPFPQLSPSHSCRGSEVSKIIRKNYASLFTWSFLGI

A0A6J1GVD7 LOW QUALITY PROTEIN: uncharacterized protein LOC1114575272.2e-4780.3Show/hide
Query:  MPIFAA-TLGSLSASSFLSLFASIDASYSPSTFFILPQKSLSKRPSNFPPRVSLSGKPDPIAGVLDTSPSSPESLRRSRRSADWKAAREYLESGFIYEGR
        MPIFAA TLGSLSA SFLSL AS DAS S ST F+L  KS SKRPSNF  RVSLSGKP+PIAGVL++SPSSPES+RR+RRSADWK AREYL+SGFI++GR
Subjt:  MPIFAA-TLGSLSASSFLSLFASIDASYSPSTFFILPQKSLSKRPSNFPPRVSLSGKPDPIAGVLDTSPSSPESLRRSRRSADWKAAREYLESGFIYEGR

Query:  IEGSNAGGLLVRFYSLMGFLPFPQLSPSHSCR
        IEGSNAGGLLVRFYSL+GFLPFP LSP+HSC+
Subjt:  IEGSNAGGLLVRFYSLMGFLPFPQLSPSHSCR

A0A6J1IUF3 uncharacterized protein LOC1114794069.8e-4879.55Show/hide
Query:  MPIFAA-TLGSLSASSFLSLFASIDASYSPSTFFILPQKSLSKRPSNFPPRVSLSGKPDPIAGVLDTSPSSPESLRRSRRSADWKAAREYLESGFIYEGR
        MPIFAA TLGSLSA SFLSL AS DAS+S S+ F+L  KS SKRPSNF  RVSLSGKP+PIAGVL++SPSSPES+RR+RRSADWK AREYL+SGFI++GR
Subjt:  MPIFAA-TLGSLSASSFLSLFASIDASYSPSTFFILPQKSLSKRPSNFPPRVSLSGKPDPIAGVLDTSPSSPESLRRSRRSADWKAAREYLESGFIYEGR

Query:  IEGSNAGGLLVRFYSLMGFLPFPQLSPSHSCR
        IEGSNAGGLLVRFYSL+GFLPFP LSP+HSC+
Subjt:  IEGSNAGGLLVRFYSLMGFLPFPQLSPSHSCR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G23700.1 Nucleic acid-binding proteins superfamily4.1e-1437.5Show/hide
Query:  AATLGSLSASSFLSLFASIDASYSPSTFFILPQKSLSKRPSNFPPRVSL--SGKPDPIAGVLDTSPSSPESLRRSRRSA------------------DWK
        A TLGS+S +S L            STF   P + L    S+   R SL    K    +   DT  +S +S   S  SA                  DWK
Subjt:  AATLGSLSASSFLSLFASIDASYSPSTFFILPQKSLSKRPSNFPPRVSL--SGKPDPIAGVLDTSPSSPESLRRSRRSA------------------DWK

Query:  AAREYLESGFIYEGRIEGSNAGGLLVRFYSLMGFLPFPQLSPSHSCRGSEVS
         A+ Y +SG  +EG ++G N GGLL+RF+SL+GFLP+PQLSPS SC+  + S
Subjt:  AAREYLESGFIYEGRIEGSNAGGLLVRFYSLMGFLPFPQLSPSHSCRGSEVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAATCTTTGCTGCAACGCTCGGATCTCTCTCTGCTTCTTCCTTTCTCTCACTCTTCGCCTCCATTGATGCTTCTTATTCCCCTTCAACCTTCTTCATTTTA
CCCCAAAAATCCCTTTCTAAACGCCCTTCCAACTTCCCCCCCAGAGTTTCCCTCTCCGGTAAACCCGACCCTATTGCCGGAGTTCTAGACACTTCCCCTTCCTCC
CCGGAATCACTTCGACGTTCTCGGAGATCTGCTGATTGGAAGGCAGCGAGGGAATACCTTGAAAGTGGATTTATCTACGAGGGTAGGATTGAAGGTTCAAACGCT
GGAGGTTTACTTGTCCGATTTTATTCTCTTATGGGGTTTCTTCCATTCCCTCAATTGAGCCCGTCTCATTCTTGTAGAGGTTCTGAAGTAAGTAAGATTATTCGG
AAAAATTATGCTTCCCTTTTTACTTGGTCATTCCTTGGGATAAATTCTATGGAGACGAAATTGCTTGAGGTAGATTTGTTTCAAACTTTTAACATGCTTCCTCCC
TTCCCTTCCCTTCTGAATTTCTTGCAGAACCATACAAGAGTATTCAAGATATTGCGAAAAGCTTAA
mRNA sequenceShow/hide mRNA sequence
GTGTATGTTTTAGCGTCACGCAATTAAGCGATGAGTTCCGATGGGATTTGCAGCATTTGGAGCCCAATCGGATTCCGAATGCTTAGTCACTCTGTTCTTCTTCTT
CCCCGCCATTTCCTTCTCTCTCAATTCTCAATATGCCAATCTTTGCTGCAACGCTCGGATCTCTCTCTGCTTCTTCCTTTCTCTCACTCTTCGCCTCCATTGATG
CTTCTTATTCCCCTTCAACCTTCTTCATTTTACCCCAAAAATCCCTTTCTAAACGCCCTTCCAACTTCCCCCCCAGAGTTTCCCTCTCCGGTAAACCCGACCCTA
TTGCCGGAGTTCTAGACACTTCCCCTTCCTCCCCGGAATCACTTCGACGTTCTCGGAGATCTGCTGATTGGAAGGCAGCGAGGGAATACCTTGAAAGTGGATTTA
TCTACGAGGGTAGGATTGAAGGTTCAAACGCTGGAGGTTTACTTGTCCGATTTTATTCTCTTATGGGGTTTCTTCCATTCCCTCAATTGAGCCCGTCTCATTCTT
GTAGAGGTTCTGAAGTAAGTAAGATTATTCGGAAAAATTATGCTTCCCTTTTTACTTGGTCATTCCTTGGGATAAATTCTATGGAGACGAAATTGCTTGAGGTAG
ATTTGTTTCAAACTTTTAACATGCTTCCTCCCTTCCCTTCCCTTCTGAATTTCTTGCAGAACCATACAAGAGTATTCAAGATATTGCGAAAAGCTTAA
Protein sequenceShow/hide protein sequence
MPIFAATLGSLSASSFLSLFASIDASYSPSTFFILPQKSLSKRPSNFPPRVSLSGKPDPIAGVLDTSPSSPESLRRSRRSADWKAAREYLESGFIYEGRIEGSNA
GGLLVRFYSLMGFLPFPQLSPSHSCRGSEVSKIIRKNYASLFTWSFLGINSMETKLLEVDLFQTFNMLPPFPSLLNFLQNHTRVFKILRKA