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Lsi07G001340 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G001340
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionglycine-rich cell wall structural protein 2
Genome locationchr07:1462911..1463399
RNA-Seq ExpressionLsi07G001340
SyntenyLsi07G001340
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146895.1 glycine-rich cell wall structural protein 2 [Cucumis sativus]5.4e-6286.14Show/hide
Query:  MKKPSTFHLSSLFFLLFVTTASSTVSGGATARKLLNFPDMSWGSPNGGG----GSPTGNYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYG
        MK+PS FHLSSLFFLLFV T+SSTVS GAT RKLLNFPDMSWGSP+GGG    G+PTG YGS HGPNWDYNWGWGSSPGSGWG+GSGSGRSPTGFGKGYG
Subjt:  MKKPSTFHLSSLFFLLFVTTASSTVSGGATARKLLNFPDMSWGSPNGGG----GSPTGNYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYG

Query:  YGFGSGSGSGSGYGYGSGSGGARGGGYGSGSGYGNSSGGGGGGGYDDPSGDEYRSATTTREKNRQG
        YGFGSGSGSGSGYGYGSGSGGA GGGYGSGSGYGNS GGG GGGY  PSGDEYRS  TTR+KNRQG
Subjt:  YGFGSGSGSGSGYGYGSGSGGARGGGYGSGSGYGNSSGGGGGGGYDDPSGDEYRSATTTREKNRQG

XP_016901488.1 PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis melo]9.8e-6487.88Show/hide
Query:  MKKPSTFHLSSLFFLLFVTTASSTVSGGATARKLLNFPDMSWGSPNGGG---GSPTGNYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGY
        MK+PS FHLSSLFFLLFV T+SSTVSG AT RKLLNFPDMSWGSPNGGG   G+PTG YGS H PNWDYNWGWGSSPGSGWG+GSGSGRSPTGFGKGYGY
Subjt:  MKKPSTFHLSSLFFLLFVTTASSTVSGGATARKLLNFPDMSWGSPNGGG---GSPTGNYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGY

Query:  GFGSGSGSGSGYGYGSGSGGARGGGYGSGSGYGNSSGGGGGGGYDDPSGDEYRSATTTREKNRQG
        GFGSGSGSGSGYGYGSGSGGA GGGYGSGSGYGNS GGGGGGGY  PSGDEYRS TTTR+KNRQG
Subjt:  GFGSGSGSGSGYGYGSGSGGARGGGYGSGSGYGNSSGGGGGGGYDDPSGDEYRSATTTREKNRQG

XP_022922583.1 glycine-rich cell wall structural protein 2-like [Cucurbita moschata]2.8e-5075.88Show/hide
Query:  MKKPSTFHLSSLFFLLFVTTASSTVSGGATARKLLNFPDMSWGSPNGGGGSPTGNYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGYGFG
        MKKPS FHLS LFFLLF  TASS V G    RKLLN PDM WGSPN GGG+PTG YGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGYGFG
Subjt:  MKKPSTFHLSSLFFLLFVTTASSTVSGGATARKLLNFPDMSWGSPNGGGGSPTGNYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGYGFG

Query:  SGSGSGSGYGYGSGSGGARGGGYGSGSGYGNSS--------GGGGGGGYDDPSGDEYRSATTTREKNRQG
        SGSGSGSGYGYGSG GGA GGGYGSGSGYGNS         GG  GGGY + SG EY  +  T++K+R G
Subjt:  SGSGSGSGYGYGSGSGGARGGGYGSGSGYGNSS--------GGGGGGGYDDPSGDEYRSATTTREKNRQG

XP_023553046.1 keratin-associated protein 21-1-like [Cucurbita pepo subsp. pepo]4.7e-5077.06Show/hide
Query:  MKKPSTFHLSSLFFLLFVTTASSTVSGGATARKLLNFPDMSWGSPNGGGGSPTGNYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGYGFG
        MKKPS FHLS LFFLLF  TASS V G    RKLLN PDM WGSPN GGG+PTG YGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGYGFG
Subjt:  MKKPSTFHLSSLFFLLFVTTASSTVSGGATARKLLNFPDMSWGSPNGGGGSPTGNYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGYGFG

Query:  SGSGSGSGYGYGSGSGGARGGGYGSGSGYGNS--SGGGG------GGGYDDPSGDEYRSATTTREKNRQG
        SGSGSGSGYGYGSG GGA GGGYGSGSGYGNS  SG GG      GGGY + SG EY  +  T++K+R G
Subjt:  SGSGSGSGYGYGSGSGGARGGGYGSGSGYGNS--SGGGG------GGGYDDPSGDEYRSATTTREKNRQG

XP_038899364.1 glycine-rich cell wall structural protein 2-like [Benincasa hispida]6.6e-6086.5Show/hide
Query:  MKKPSTFHLSSLFFLLFVTTA-SSTVSGGATARKLLNFPDMSWGSPN--GGGGSPTGNYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGY
        MKKPSTFHL SLFFLLFV TA SSTVSG ATARKLLNFPDMSWGSPN  GGGG+PTG YGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGY
Subjt:  MKKPSTFHLSSLFFLLFVTTA-SSTVSGGATARKLLNFPDMSWGSPN--GGGGSPTGNYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGY

Query:  GFGSGSGSGSGYGYGSGSGGARGGGYGSGSGYGNSSGGGGGGGYDDPSGDEYRSATTTREKNR
        G+G GSGSGSG+GYGSGSGGA GGGYGSGSGYGNS G G GGGY  P+G+EYRS TTT++KNR
Subjt:  GFGSGSGSGSGYGYGSGSGGARGGGYGSGSGYGNSSGGGGGGGYDDPSGDEYRSATTTREKNR

TrEMBL top hitse value%identityAlignment
A0A0A0KXP2 Uncharacterized protein2.6e-6286.14Show/hide
Query:  MKKPSTFHLSSLFFLLFVTTASSTVSGGATARKLLNFPDMSWGSPNGGG----GSPTGNYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYG
        MK+PS FHLSSLFFLLFV T+SSTVS GAT RKLLNFPDMSWGSP+GGG    G+PTG YGS HGPNWDYNWGWGSSPGSGWG+GSGSGRSPTGFGKGYG
Subjt:  MKKPSTFHLSSLFFLLFVTTASSTVSGGATARKLLNFPDMSWGSPNGGG----GSPTGNYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYG

Query:  YGFGSGSGSGSGYGYGSGSGGARGGGYGSGSGYGNSSGGGGGGGYDDPSGDEYRSATTTREKNRQG
        YGFGSGSGSGSGYGYGSGSGGA GGGYGSGSGYGNS GGG GGGY  PSGDEYRS  TTR+KNRQG
Subjt:  YGFGSGSGSGSGYGYGSGSGGARGGGYGSGSGYGNSSGGGGGGGYDDPSGDEYRSATTTREKNRQG

A0A1S4DZT0 glycine-rich cell wall structural protein 24.7e-6487.88Show/hide
Query:  MKKPSTFHLSSLFFLLFVTTASSTVSGGATARKLLNFPDMSWGSPNGGG---GSPTGNYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGY
        MK+PS FHLSSLFFLLFV T+SSTVSG AT RKLLNFPDMSWGSPNGGG   G+PTG YGS H PNWDYNWGWGSSPGSGWG+GSGSGRSPTGFGKGYGY
Subjt:  MKKPSTFHLSSLFFLLFVTTASSTVSGGATARKLLNFPDMSWGSPNGGG---GSPTGNYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGY

Query:  GFGSGSGSGSGYGYGSGSGGARGGGYGSGSGYGNSSGGGGGGGYDDPSGDEYRSATTTREKNRQG
        GFGSGSGSGSGYGYGSGSGGA GGGYGSGSGYGNS GGGGGGGY  PSGDEYRS TTTR+KNRQG
Subjt:  GFGSGSGSGSGYGYGSGSGGARGGGYGSGSGYGNSSGGGGGGGYDDPSGDEYRSATTTREKNRQG

A0A5A7TRC6 Glycine-rich cell wall structural protein 24.7e-6487.88Show/hide
Query:  MKKPSTFHLSSLFFLLFVTTASSTVSGGATARKLLNFPDMSWGSPNGGG---GSPTGNYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGY
        MK+PS FHLSSLFFLLFV T+SSTVSG AT RKLLNFPDMSWGSPNGGG   G+PTG YGS H PNWDYNWGWGSSPGSGWG+GSGSGRSPTGFGKGYGY
Subjt:  MKKPSTFHLSSLFFLLFVTTASSTVSGGATARKLLNFPDMSWGSPNGGG---GSPTGNYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGY

Query:  GFGSGSGSGSGYGYGSGSGGARGGGYGSGSGYGNSSGGGGGGGYDDPSGDEYRSATTTREKNRQG
        GFGSGSGSGSGYGYGSGSGGA GGGYGSGSGYGNS GGGGGGGY  PSGDEYRS TTTR+KNRQG
Subjt:  GFGSGSGSGSGYGYGSGSGGARGGGYGSGSGYGNSSGGGGGGGYDDPSGDEYRSATTTREKNRQG

A0A6J1E737 glycine-rich cell wall structural protein 2-like1.3e-5075.88Show/hide
Query:  MKKPSTFHLSSLFFLLFVTTASSTVSGGATARKLLNFPDMSWGSPNGGGGSPTGNYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGYGFG
        MKKPS FHLS LFFLLF  TASS V G    RKLLN PDM WGSPN GGG+PTG YGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGYGFG
Subjt:  MKKPSTFHLSSLFFLLFVTTASSTVSGGATARKLLNFPDMSWGSPNGGGGSPTGNYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGYGFG

Query:  SGSGSGSGYGYGSGSGGARGGGYGSGSGYGNSS--------GGGGGGGYDDPSGDEYRSATTTREKNRQG
        SGSGSGSGYGYGSG GGA GGGYGSGSGYGNS         GG  GGGY + SG EY  +  T++K+R G
Subjt:  SGSGSGSGYGYGSGSGGARGGGYGSGSGYGNSS--------GGGGGGGYDDPSGDEYRSATTTREKNRQG

A0A6J1J236 glycine-rich cell wall structural protein 2-like3.3e-4974.71Show/hide
Query:  MKKPSTFHLSSLFFLLFVTTASSTVSGGATARKLLNFPDMSWGSPNGGGGSPTGNYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGYGFG
        MKKPS FHLS LFFLLF  T SS V G    RKLLN PDM WGSPN GGG+PTG YGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRS TGFGKGYGYGFG
Subjt:  MKKPSTFHLSSLFFLLFVTTASSTVSGGATARKLLNFPDMSWGSPNGGGGSPTGNYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGYGFG

Query:  SGSGSGSGYGYGSGSGGARGGGYGSGSGYGNSS--------GGGGGGGYDDPSGDEYRSATTTREKNRQG
        SGSGSGSGYGYGSG GGA GGGYGSGSGYGNS         GG  GGGY + SG EY  +  T++K+R G
Subjt:  SGSGSGSGYGYGSGSGGARGGGYGSGSGYGNSS--------GGGGGGGYDDPSGDEYRSATTTREKNRQG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G61660.1 glycine-rich protein3.0e-2676.34Show/hide
Query:  GSPTGNYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGYGFGSGSGSGSGYGYGSGSGGARGGGYGSGSGYGNSSGGGGGGGYD
        G+  G  GS  GPNW+YNWGWGS+PGSGWGYG+GSGRSPTG+G+G GYG+GSGSGSG+GYGYGSG GGARGGGYG GSG G S GGGGGGG++
Subjt:  GSPTGNYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGYGFGSGSGSGSGYGYGSGSGGARGGGYGSGSGYGNSSGGGGGGGYD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAAACCATCTACATTTCATCTCTCATCTCTCTTCTTTCTCCTCTTTGTCACCACAGCTTCCTCCACCGTCAGCGGCGGCGCTACTGCCCGGAAACTGCTCAACTT
TCCTGACATGTCTTGGGGATCACCCAATGGAGGAGGTGGGAGCCCCACTGGGAACTATGGCTCTGCCCATGGTCCTAATTGGGACTACAATTGGGGTTGGGGTTCGAGCC
CGGGTAGCGGTTGGGGTTACGGTTCCGGTTCCGGCCGCTCCCCAACCGGATTCGGAAAAGGTTATGGATATGGATTTGGATCTGGATCAGGGTCCGGGTCTGGATATGGG
TATGGAAGTGGGAGTGGTGGTGCTCGTGGTGGTGGATATGGGTCCGGAAGTGGCTACGGTAATTCTAGCGGTGGCGGTGGCGGTGGTGGATACGACGATCCGAGTGGCGA
TGAGTATCGATCGGCAACCACTACAAGGGAGAAAAATAGGCAAGGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAAAACCATCTACATTTCATCTCTCATCTCTCTTCTTTCTCCTCTTTGTCACCACAGCTTCCTCCACCGTCAGCGGCGGCGCTACTGCCCGGAAACTGCTCAACTT
TCCTGACATGTCTTGGGGATCACCCAATGGAGGAGGTGGGAGCCCCACTGGGAACTATGGCTCTGCCCATGGTCCTAATTGGGACTACAATTGGGGTTGGGGTTCGAGCC
CGGGTAGCGGTTGGGGTTACGGTTCCGGTTCCGGCCGCTCCCCAACCGGATTCGGAAAAGGTTATGGATATGGATTTGGATCTGGATCAGGGTCCGGGTCTGGATATGGG
TATGGAAGTGGGAGTGGTGGTGCTCGTGGTGGTGGATATGGGTCCGGAAGTGGCTACGGTAATTCTAGCGGTGGCGGTGGCGGTGGTGGATACGACGATCCGAGTGGCGA
TGAGTATCGATCGGCAACCACTACAAGGGAGAAAAATAGGCAAGGGTAG
Protein sequenceShow/hide protein sequence
MKKPSTFHLSSLFFLLFVTTASSTVSGGATARKLLNFPDMSWGSPNGGGGSPTGNYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGYGFGSGSGSGSGYG
YGSGSGGARGGGYGSGSGYGNSSGGGGGGGYDDPSGDEYRSATTTREKNRQG