; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi07G001530 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G001530
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTetratricopeptide-like helical
Genome locationchr07:1648769..1649101
RNA-Seq ExpressionLsi07G001530
SyntenyLsi07G001530
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044707.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]1.2e-2563.03Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSN--------------------SVPCIWGIFCSLSKAIEKRASNG
        MSVSLEALAMAGIDSNEW MDAQEWERNE ++ VP HLLADE +D+D E VTS +SN                        I GIF SLSK IEKRASNG
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSN--------------------SVPCIWGIFCSLSKAIEKRASNG

Query:  MNSVRTMVGTILGFFMVMT
        MNSVR +V TILGF MVMT
Subjt:  MNSVRTMVGTILGFFMVMT

KAG6577295.1 hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia]4.3e-3162.31Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSN--------------------SVPCIWGIFCSLSKAIEKRASNG
        MSVSLEALAMAGI SNEWAMDA+EWERNE E DVP HLLAD  EDDDD+NVTS VSN                     + C WGI CSLSK++EKRASNG
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSN--------------------SVPCIWGIFCSLSKAIEKRASNG

Query:  MNSVRTMVGTILGFFMVMTIKIISAQRSKL
        M+SVR +V TILGF +V  +KIISA  S +
Subjt:  MNSVRTMVGTILGFFMVMTIKIISAQRSKL

KAG7015383.1 hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma]4.3e-3162.31Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSN--------------------SVPCIWGIFCSLSKAIEKRASNG
        MSVSLEALAMAGI SNEWAMDA+EWERNE E DVP HLLAD  EDDDD+NVTS VSN                     + C WGI CSLSK++EKRASNG
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSN--------------------SVPCIWGIFCSLSKAIEKRASNG

Query:  MNSVRTMVGTILGFFMVMTIKIISAQRSKL
        M+SVR +V TILGF +V  +KIISA  S +
Subjt:  MNSVRTMVGTILGFFMVMTIKIISAQRSKL

TYK16880.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]2.2e-3064.62Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSN--------------------SVPCIWGIFCSLSKAIEKRASNG
        MSVSLEALAMAGIDSNEW MDAQEWERNE ++ VP HLLADE +D+D E VTS +SN                        I GIF SLSK IEKRASNG
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSN--------------------SVPCIWGIFCSLSKAIEKRASNG

Query:  MNSVRTMVGTILGFFMVMTIKIISAQRSKL
        MNSVR +V TILGF MVMT+KIISAQRSK+
Subjt:  MNSVRTMVGTILGFFMVMTIKIISAQRSKL

XP_022943015.1 uncharacterized protein LOC111447880 [Cucurbita moschata]2.4e-2152.89Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSNSVPC------IWGIFCS------LSKAIEKRASNGMNSVRTMV
        MSVSLEALAMAGIDSNEWAMDA+EWERNE E D+P HLLADE +D++DE  T   +    C      + G+ CS      L K  EKR  N ++S+  + 
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSNSVPC------IWGIFCS------LSKAIEKRASNGMNSVRTMV

Query:  GTILGFFMVMTIKIISAQRSK
          ++GF M MTIKII+++RSK
Subjt:  GTILGFFMVMTIKIISAQRSK

TrEMBL top hitse value%identityAlignment
A0A0A0KU90 Uncharacterized protein1.9e-0847.42Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEID----VPLHLLADEVEDDDDENVTSIVSNSVPCIWG--------IFCS-------LSKAIEKRAS
        M VSLEALAMAGIDSNEWAMDA+EW+ N  +++    +P HLLADE    D+EN+ +       CI G        +FC+       L K +EKRAS
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEID----VPLHLLADEVEDDDDENVTSIVSNSVPCIWG--------IFCS-------LSKAIEKRAS

A0A0A0KWE7 Uncharacterized protein1.2e-2964.18Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDD-DENV-TSIVSN-------------SVPC---------IWGIFCSLSKAIEKR
        MSVSLEALAMAGIDSNEWAMDA+EWERNE ++ VP HLLADE +D+D DE+V TS +SN                C         I GIFCSLSK IEKR
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDD-DENV-TSIVSN-------------SVPC---------IWGIFCSLSKAIEKR

Query:  ASNGMNSVRTMVGTILGFFMVMTIKIISAQRSKL
        ASNGM+SVR +V TILGF MVMT+KIISAQRSK+
Subjt:  ASNGMNSVRTMVGTILGFFMVMTIKIISAQRSKL

A0A5A7TS68 Tetratricopeptide-like helical5.9e-2663.03Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSN--------------------SVPCIWGIFCSLSKAIEKRASNG
        MSVSLEALAMAGIDSNEW MDAQEWERNE ++ VP HLLADE +D+D E VTS +SN                        I GIF SLSK IEKRASNG
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSN--------------------SVPCIWGIFCSLSKAIEKRASNG

Query:  MNSVRTMVGTILGFFMVMT
        MNSVR +V TILGF MVMT
Subjt:  MNSVRTMVGTILGFFMVMT

A0A5D3CZU0 Tetratricopeptide-like helical1.0e-3064.62Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSN--------------------SVPCIWGIFCSLSKAIEKRASNG
        MSVSLEALAMAGIDSNEW MDAQEWERNE ++ VP HLLADE +D+D E VTS +SN                        I GIF SLSK IEKRASNG
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSN--------------------SVPCIWGIFCSLSKAIEKRASNG

Query:  MNSVRTMVGTILGFFMVMTIKIISAQRSKL
        MNSVR +V TILGF MVMT+KIISAQRSK+
Subjt:  MNSVRTMVGTILGFFMVMTIKIISAQRSKL

A0A6J1FX98 uncharacterized protein LOC1114478801.2e-2152.89Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSNSVPC------IWGIFCS------LSKAIEKRASNGMNSVRTMV
        MSVSLEALAMAGIDSNEWAMDA+EWERNE E D+P HLLADE +D++DE  T   +    C      + G+ CS      L K  EKR  N ++S+  + 
Subjt:  MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSNSVPC------IWGIFCS------LSKAIEKRASNGMNSVRTMV

Query:  GTILGFFMVMTIKIISAQRSK
          ++GF M MTIKII+++RSK
Subjt:  GTILGFFMVMTIKIISAQRSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22320.1 unknown protein4.7e-0737.65Show/hide
Query:  LEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEV----------EDDDDENVTSIVSNSVPCIWGIFCSLSKAIEKRASN
        +EALAMAG+D  EW +  +EWE  E+   VPLHLLAD+           ++DDD+ V   ++        I  S+ K IE+  S+
Subjt:  LEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEV----------EDDDDENVTSIVSNSVPCIWGIFCSLSKAIEKRASN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTCAAGAATGGGAAAGAAACGAAACCGAGATCGACGTTCCACTGCA
TTTATTAGCCGATGAAGTTGAAGATGACGACGACGAAAACGTAACGAGTATTGTGAGTAATAGTGTCCCTTGCATTTGGGGGATTTTTTGTAGTTTAAGCAAAGCCATAG
AGAAAAGGGCTTCTAATGGGATGAACTCCGTGAGAACAATGGTGGGAACTATTTTAGGGTTCTTTATGGTGATGACCATCAAGATAATTAGTGCACAAAGATCCAAGTTG
TAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTCAAGAATGGGAAAGAAACGAAACCGAGATCGACGTTCCACTGCA
TTTATTAGCCGATGAAGTTGAAGATGACGACGACGAAAACGTAACGAGTATTGTGAGTAATAGTGTCCCTTGCATTTGGGGGATTTTTTGTAGTTTAAGCAAAGCCATAG
AGAAAAGGGCTTCTAATGGGATGAACTCCGTGAGAACAATGGTGGGAACTATTTTAGGGTTCTTTATGGTGATGACCATCAAGATAATTAGTGCACAAAGATCCAAGTTG
TAA
Protein sequenceShow/hide protein sequence
MSVSLEALAMAGIDSNEWAMDAQEWERNETEIDVPLHLLADEVEDDDDENVTSIVSNSVPCIWGIFCSLSKAIEKRASNGMNSVRTMVGTILGFFMVMTIKIISAQRSKL