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Lsi07G001540 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G001540
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTetratricopeptide-like helical
Genome locationchr07:1653926..1657159
RNA-Seq ExpressionLsi07G001540
SyntenyLsi07G001540
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044707.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]7.7e-0951.56Show/hide
Query:  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQ-EHDHNAVSSPITNFDFPAAGFFRTWRQK
        MAGID NEW MDA+EWER+++  D++PPHLLAD + + D   V+S I+N+ F   G F  WR++
Subjt:  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQ-EHDHNAVSSPITNFDFPAAGFFRTWRQK

KAG6577295.1 hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia]6.3e-1157.14Show/hide
Query:  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQEHDHNAVSSPITNFDFPAAGFFRTWRQK
        MAGI  NEW MDAEEWER++++ND +PPHLLAD  + D N V+S ++N+ FP AGFF + R++
Subjt:  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQEHDHNAVSSPITNFDFPAAGFFRTWRQK

KAG7015383.1 hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-1061.4Show/hide
Query:  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQEHDHNAVSSPITNFDFPAAGFF
        MAGI  NEW MDAEEWER++++ND +PPHLLAD  + D N V+S ++N+ FP AGFF
Subjt:  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQEHDHNAVSSPITNFDFPAAGFF

TYK16880.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]7.7e-0951.56Show/hide
Query:  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQ-EHDHNAVSSPITNFDFPAAGFFRTWRQK
        MAGID NEW MDA+EWER+++  D++PPHLLAD + + D   V+S I+N+ F   G F  WR++
Subjt:  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQ-EHDHNAVSSPITNFDFPAAGFFRTWRQK

XP_022943015.1 uncharacterized protein LOC111447880 [Cucurbita moschata]1.8e-0562.5Show/hide
Query:  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADH-QEHDHNAVSSPIT
        MAGID NEW MDAEEWER++M+ D IPPHLLAD   E D  +   P T
Subjt:  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADH-QEHDHNAVSSPIT

TrEMBL top hitse value%identityAlignment
A0A0A0KU90 Uncharacterized protein1.6e-0468.29Show/hide
Query:  MAGIDLNEWNMDAEEWERS--QMKN-DIIPPHLLADHQEHD
        MAGID NEW MDAEEW+ +  QM+N DIIPPHLLAD  E +
Subjt:  MAGIDLNEWNMDAEEWERS--QMKN-DIIPPHLLADHQEHD

A0A0A0KWE7 Uncharacterized protein5.7e-1053.12Show/hide
Query:  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQEH---DHNAVSSPITNFDFPAAGFFRTWR
        MAGID NEW MDAEEWER+++  D++PPHLLAD ++    D +  +S I+N+ FP  G F  WR
Subjt:  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQEH---DHNAVSSPITNFDFPAAGFFRTWR

A0A5A7TS68 Tetratricopeptide-like helical3.7e-0951.56Show/hide
Query:  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQ-EHDHNAVSSPITNFDFPAAGFFRTWRQK
        MAGID NEW MDA+EWER+++  D++PPHLLAD + + D   V+S I+N+ F   G F  WR++
Subjt:  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQ-EHDHNAVSSPITNFDFPAAGFFRTWRQK

A0A5D3CZU0 Tetratricopeptide-like helical3.7e-0951.56Show/hide
Query:  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQ-EHDHNAVSSPITNFDFPAAGFFRTWRQK
        MAGID NEW MDA+EWER+++  D++PPHLLAD + + D   V+S I+N+ F   G F  WR++
Subjt:  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQ-EHDHNAVSSPITNFDFPAAGFFRTWRQK

A0A6J1FX98 uncharacterized protein LOC1114478808.6e-0662.5Show/hide
Query:  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADH-QEHDHNAVSSPIT
        MAGID NEW MDAEEWER++M+ D IPPHLLAD   E D  +   P T
Subjt:  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADH-QEHDHNAVSSPIT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGGAATTGATTTGAATGAATGGAATATGGATGCTGAAGAATGGGAAAGAAGCCAAATGAAGAACGATATTATTCCGCCACATTTATTAGCCGACCACCAAGAACA
TGATCATAATGCAGTCAGTAGTCCGATCACTAACTTTGACTTTCCGGCCGCCGGATTCTTCCGCACCTGGCGGCAGAAGGCGGCGGAGCTGATGCTTAATGATTATTGGG
CGCAGCCATTACAGACCTTTAAAAAACTTATAAATTATACAGAAATAATTTACGTCAAAATCACACGGGACACGGTTTATAAAGTAGATATGACTTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGGAATTGATTTGAATGAATGGAATATGGATGCTGAAGAATGGGAAAGAAGCCAAATGAAGAACGATATTATTCCGCCACATTTATTAGCCGACCACCAAGAACA
TGATCATAATGCAGTCAGTAGTCCGATCACTAACTTTGACTTTCCGGCCGCCGGATTCTTCCGCACCTGGCGGCAGAAGGCGGCGGAGCTGATGCTTAATGATTATTGGG
CGCAGCCATTACAGACCTTTAAAAAACTTATAAATTATACAGAAATAATTTACGTCAAAATCACACGGGACACGGTTTATAAAGTAGATATGACTTTATAG
Protein sequenceShow/hide protein sequence
MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQEHDHNAVSSPITNFDFPAAGFFRTWRQKAAELMLNDYWAQPLQTFKKLINYTEIIYVKITRDTVYKVDMTL