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Lsi07G001560 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G001560
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionmyb-related protein 308-like
Genome locationchr07:1661799..1663329
RNA-Seq ExpressionLsi07G001560
SyntenyLsi07G001560
Gene Ontology termsNA
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577294.1 Transcription factor MYB93, partial [Cucurbita argyrosperma subsp. sororia]1.1e-1942.44Show/hide
Query:  MERSPPSSSCDEIRLKRGPWTLEEDEKL----------------------------------------------RNNKPFSISIQSLETR----------
        M RSPPSSS ++I LKRGPWT EED KL                                              +  +   + + S+             
Subjt:  MERSPPSSSCDEIRLKRGPWTLEEDEKL----------------------------------------------RNNKPFSISIQSLETR----------

Query:  -RTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSS-HLP---LQNLLLFDLPPLEHQLQALQMATLK
         RTDNEIKN WNTHLKKRLI++G DP+THM  IYDNTLS+ HLP   L+N LLF LP L+ QL+ALQMATL+
Subjt:  -RTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSS-HLP---LQNLLLFDLPPLEHQLQALQMATLK

XP_022929267.1 transcription factor MYB41-like [Cucurbita moschata]5.7e-2142.44Show/hide
Query:  MERSPPSSSCDEIRLKRGPWTLEEDEKL----------------------------------------------RNNKPFSISIQSLETR----------
        M RSPPSSS ++I LKRGPWT EED KL                                              +  +   + + S+             
Subjt:  MERSPPSSSCDEIRLKRGPWTLEEDEKL----------------------------------------------RNNKPFSISIQSLETR----------

Query:  -RTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSS-HLP---LQNLLLFDLPPLEHQLQALQMATLK
         RTDNEIKN WNTHLKKRLI++G DP+THM  IYDNTLS+ HLP   L+N LLF LP L+ QL+ALQMATL+
Subjt:  -RTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSS-HLP---LQNLLLFDLPPLEHQLQALQMATLK

XP_022984302.1 myb-related protein 308-like [Cucurbita maxima]3.7e-2042.44Show/hide
Query:  MERSPPSSSCDEIRLKRGPWTLEEDEKL----------------------------------------------RNNKPFSISIQSLETR----------
        M RSPPSS  ++I LKRGPWT EED KL                                              +  +   + + S+             
Subjt:  MERSPPSSSCDEIRLKRGPWTLEEDEKL----------------------------------------------RNNKPFSISIQSLETR----------

Query:  -RTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSS-HLP---LQNLLLFDLPPLEHQLQALQMATLK
         RTDNEIKN WNTHLKKRLI++GFDP+THM  IYDNTLS+ HLP   L+N LLFDLP L+ QL+ALQM TL+
Subjt:  -RTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSS-HLP---LQNLLLFDLPPLEHQLQALQMATLK

XP_023553162.1 myb-related protein 308-like [Cucurbita pepo subsp. pepo]1.5e-2144.19Show/hide
Query:  MERSPPSSSCDEIRLKRGPWTLEEDEKL----------------------------------------------RNNKPFSISIQSLETR----------
        M RSPPSS  ++I LKRGPWT EED KL                                              +  +   + + S+             
Subjt:  MERSPPSSSCDEIRLKRGPWTLEEDEKL----------------------------------------------RNNKPFSISIQSLETR----------

Query:  -RTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSS-HLP---LQNLLLFDLPPLEHQLQALQMATLK
         RTDNEIKN WNTHLKKRLI++GFDP+THM TIYDNTLS+ HLP   L+N LLFDLP L+ QLQALQMATL+
Subjt:  -RTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSS-HLP---LQNLLLFDLPPLEHQLQALQMATLK

XP_038882316.1 transcription factor MYB53-like [Benincasa hispida]1.8e-2245.35Show/hide
Query:  MERSPPSSSCDEIRLKRGPWTLEEDEKL----------------------------------------------RNNKPFSISIQSLETR----------
        M RSP  SSCDEI LKRGPWTLEEDEKL                                              +  +   +++ S+             
Subjt:  MERSPPSSSCDEIRLKRGPWTLEEDEKL----------------------------------------------RNNKPFSISIQSLETR----------

Query:  -RTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSSH----LPLQNLLLFDLPPLEHQLQALQMATLK
         RTDNEIKNLWNTHL+K+ IQ+GFDP+T M TIY NTL SH    L LQNLL FDLP LEHQL+ALQMATL+
Subjt:  -RTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSSH----LPLQNLLLFDLPPLEHQLQALQMATLK

TrEMBL top hitse value%identityAlignment
A0A199USM0 Transcription factor MYB39 (Fragment)1.5e-1149.57Show/hide
Query:  RSPP-----SSSCDEIRLKRGPWTLEEDEKLRN--NKPFSISIQSLE--TRRTDNEIKNLWNTHLKKRLIQVGFDPITHM-STIYDNTLSSHLPLQNL-L
        R PP     S  CDE  LK+GPWT EED+KL +   K    S ++L     RTDNEIKN WNTHLKKRLIQ+G DP+TH   T +  TL   L L NL  
Subjt:  RSPP-----SSSCDEIRLKRGPWTLEEDEKLRN--NKPFSISIQSLE--TRRTDNEIKNLWNTHLKKRLIQVGFDPITHM-STIYDNTLSSHLPLQNL-L

Query:  LFDLPPLEHQLQALQ
        L D  P +     LQ
Subjt:  LFDLPPLEHQLQALQ

A0A444FGS4 HTH myb-type domain-containing protein1.8e-1262.5Show/hide
Query:  MERSPPSSSCDEIRLKRGPWTLEEDEKLRNNKPFSISIQSLETRRTDNEIKNLWNTHLKKRLIQVGFDPITH
        M RSP    CDE  LK+GPWT EED+KL        +I S    RTDNEIKN WNTHLKKRLIQ+GFDP+TH
Subjt:  MERSPPSSSCDEIRLKRGPWTLEEDEKLRNNKPFSISIQSLETRRTDNEIKNLWNTHLKKRLIQVGFDPITH

A0A5A7SQ60 Transcription factor MYB391.5e-1146.88Show/hide
Query:  MERSPPSSSCDEIRLKRGPWTLEEDEKLRN-----------NKPFSISIQSLETRRTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSSHL
        M R+P    CD+  LK+GPWT EED+KL N           N P + +I +    RTDNEIKN WNTH++KRL+++G DP+TH   I    LSS L
Subjt:  MERSPPSSSCDEIRLKRGPWTLEEDEKLRN-----------NKPFSISIQSLETRRTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSSHL

A0A6J1EMB7 transcription factor MYB41-like2.7e-2142.44Show/hide
Query:  MERSPPSSSCDEIRLKRGPWTLEEDEKL----------------------------------------------RNNKPFSISIQSLETR----------
        M RSPPSSS ++I LKRGPWT EED KL                                              +  +   + + S+             
Subjt:  MERSPPSSSCDEIRLKRGPWTLEEDEKL----------------------------------------------RNNKPFSISIQSLETR----------

Query:  -RTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSS-HLP---LQNLLLFDLPPLEHQLQALQMATLK
         RTDNEIKN WNTHLKKRLI++G DP+THM  IYDNTLS+ HLP   L+N LLF LP L+ QL+ALQMATL+
Subjt:  -RTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSS-HLP---LQNLLLFDLPPLEHQLQALQMATLK

A0A6J1J1U8 myb-related protein 308-like1.8e-2042.44Show/hide
Query:  MERSPPSSSCDEIRLKRGPWTLEEDEKL----------------------------------------------RNNKPFSISIQSLETR----------
        M RSPPSS  ++I LKRGPWT EED KL                                              +  +   + + S+             
Subjt:  MERSPPSSSCDEIRLKRGPWTLEEDEKL----------------------------------------------RNNKPFSISIQSLETR----------

Query:  -RTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSS-HLP---LQNLLLFDLPPLEHQLQALQMATLK
         RTDNEIKN WNTHLKKRLI++GFDP+THM  IYDNTLS+ HLP   L+N LLFDLP L+ QL+ALQM TL+
Subjt:  -RTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSS-HLP---LQNLLLFDLPPLEHQLQALQMATLK

SwissProt top hitse value%identityAlignment
P80074 Myb-related protein Pp1 (Fragment)5.2e-0981.25Show/hide
Query:  RRTDNEIKNLWNTHLKKRLIQVGFDPITHMST
        RRTDNEIKN WNTHLKKRL+Q+G DP+TH ST
Subjt:  RRTDNEIKNLWNTHLKKRLIQVGFDPITHMST

Q9FJP2 Transcription factor MYB531.2e-1046.94Show/hide
Query:  LKRGPWTLEEDEKLRN-----NKPFSISIQSLETRRTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYD--NTLSSHLPLQNLL-LFDLP---PLEHQ
        +KRG ++ EE+E + N        +S+ I S    RTDNEIKN WNTHLKK+LIQ+GFDP+TH     D  ++LS  + L NL  L DL    P+E Q
Subjt:  LKRGPWTLEEDEKLRN-----NKPFSISIQSLETRRTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYD--NTLSSHLPLQNLL-LFDLP---PLEHQ

Q9FLR1 Transcription factor MYB295.2e-0941.57Show/hide
Query:  LKRGPWTLEEDEKL------RNNKPFSISIQSLETRRTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSSHLPLQNLLLFDLPP
        +KRG ++ EE++ +      R NK +S+  + L  +RTDNEIKN WNTHLKK LI  G DP+TH    YD+         ++    LPP
Subjt:  LKRGPWTLEEDEKL------RNNKPFSISIQSLETRRTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSSHLPLQNLLLFDLPP

Q9LE63 Transcription factor MYB1065.2e-0946.67Show/hide
Query:  LKRGPWTLEEDE------KLRNNKPFSISIQSLETRRTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSS
        +KRG +T++E++       L  N+  +I+      +RTDNEIKN WNTHLKKRLI++G DP+TH     + TLSS
Subjt:  LKRGPWTLEEDE------KLRNNKPFSISIQSLETRRTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSS

Q9SBF3 Transcription factor MYB925.2e-0951.56Show/hide
Query:  LKRGPWTLEEDEKLRN------NKPFSISIQSLETRRTDNEIKNLWNTHLKKRLIQVGFDPITH
        +KRG ++ +E++ + N      NK  +I+ Q     RTDNEIKN WNTHLKK+LIQ+GFDP+TH
Subjt:  LKRGPWTLEEDEKLRN------NKPFSISIQSLETRRTDNEIKNLWNTHLKKRLIQVGFDPITH

Arabidopsis top hitse value%identityAlignment
AT3G01140.1 myb domain protein 1063.7e-1046.67Show/hide
Query:  LKRGPWTLEEDE------KLRNNKPFSISIQSLETRRTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSS
        +KRG +T++E++       L  N+  +I+      +RTDNEIKN WNTHLKKRLI++G DP+TH     + TLSS
Subjt:  LKRGPWTLEEDE------KLRNNKPFSISIQSLETRRTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSS

AT5G07690.1 myb domain protein 293.7e-1041.57Show/hide
Query:  LKRGPWTLEEDEKL------RNNKPFSISIQSLETRRTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSSHLPLQNLLLFDLPP
        +KRG ++ EE++ +      R NK +S+  + L  +RTDNEIKN WNTHLKK LI  G DP+TH    YD+         ++    LPP
Subjt:  LKRGPWTLEEDEKL------RNNKPFSISIQSLETRRTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSSHLPLQNLLLFDLPP

AT5G10280.1 myb domain protein 923.7e-1051.56Show/hide
Query:  LKRGPWTLEEDEKLRN------NKPFSISIQSLETRRTDNEIKNLWNTHLKKRLIQVGFDPITH
        +KRG ++ +E++ + N      NK  +I+ Q     RTDNEIKN WNTHLKK+LIQ+GFDP+TH
Subjt:  LKRGPWTLEEDEKLRN------NKPFSISIQSLETRRTDNEIKNLWNTHLKKRLIQVGFDPITH

AT5G54230.1 myb domain protein 499.6e-1146.75Show/hide
Query:  LKRGPWTLEEDE------KLRNNKPFSISIQSLETRRTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSSHL
        +KRG ++L+E+E      +L  NK  +I+I      RTDNEIKN WNTH+KK+L+++G DP+TH   I    LSS L
Subjt:  LKRGPWTLEEDE------KLRNNKPFSISIQSLETRRTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSSHL

AT5G65230.1 myb domain protein 538.7e-1246.94Show/hide
Query:  LKRGPWTLEEDEKLRN-----NKPFSISIQSLETRRTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYD--NTLSSHLPLQNLL-LFDLP---PLEHQ
        +KRG ++ EE+E + N        +S+ I S    RTDNEIKN WNTHLKK+LIQ+GFDP+TH     D  ++LS  + L NL  L DL    P+E Q
Subjt:  LKRGPWTLEEDEKLRN-----NKPFSISIQSLETRRTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYD--NTLSSHLPLQNLL-LFDLP---PLEHQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATGGAAAGATCTCCTCCTTCCTCTTCTTGTGATGAAATTCGCCTAAAAAGGGGTCCTTGGACTCTTGAAGAAGATGAGAAACTTAGGAACAACAAACCATTCTC
AATCTCCATTCAATCCTTGGAAACAAGACGGACAGACAATGAGATAAAAAATTTGTGGAACACCCATCTCAAAAAAAGGCTCATTCAAGTGGGTTTTGATCCCATCACTC
ACATGTCCACAATTTACGATAATACCCTCTCATCTCATCTTCCTCTCCAAAATCTTCTCCTTTTTGACCTTCCTCCATTGGAACACCAACTACAAGCTCTTCAAATGGCC
ACCTTAAAAGGTAAAACTACATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAATGGAAAGATCTCCTCCTTCCTCTTCTTGTGATGAAATTCGCCTAAAAAGGGGTCCTTGGACTCTTGAAGAAGATGAGAAACTTAGGAACAACAAACCATTCTC
AATCTCCATTCAATCCTTGGAAACAAGACGGACAGACAATGAGATAAAAAATTTGTGGAACACCCATCTCAAAAAAAGGCTCATTCAAGTGGGTTTTGATCCCATCACTC
ACATGTCCACAATTTACGATAATACCCTCTCATCTCATCTTCCTCTCCAAAATCTTCTCCTTTTTGACCTTCCTCCATTGGAACACCAACTACAAGCTCTTCAAATGGCC
ACCTTAAAAGGTAAAACTACATAA
Protein sequenceShow/hide protein sequence
MKMERSPPSSSCDEIRLKRGPWTLEEDEKLRNNKPFSISIQSLETRRTDNEIKNLWNTHLKKRLIQVGFDPITHMSTIYDNTLSSHLPLQNLLLFDLPPLEHQLQALQMA
TLKGKTT