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Lsi07G002540 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G002540
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProlyl-tRNA synthetase
Genome locationchr07:2795962..2797216
RNA-Seq ExpressionLsi07G002540
SyntenyLsi07G002540
Gene Ontology termsGO:0006433 - prolyl-tRNA aminoacylation (biological process)
GO:0009553 - embryo sac development (biological process)
GO:0010109 - regulation of photosynthesis (biological process)
GO:0048316 - seed development (biological process)
GO:0048481 - plant ovule development (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0017101 - aminoacyl-tRNA synthetase multienzyme complex (cellular component)
GO:0004827 - proline-tRNA ligase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3612616.1 hypothetical protein FXO38_36752 [Capsicum annuum]6.6e-0872.73Show/hide
Query:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNHR
        ++ANAEL +YG VR TMVIRPYG AI+EA Q Y+NVKFKET HR
Subjt:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNHR

KAG6425666.1 hypothetical protein SASPL_116111 [Salvia splendens]1.1e-0774.42Show/hide
Query:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNH
        ++ANAEL +YG VR TMVIRPYG AI+EA Q YLNVKFKET H
Subjt:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNH

XP_021892106.1 proline--tRNA ligase, chloroplastic/mitochondrial [Carica papaya]1.1e-0774.42Show/hide
Query:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNH
        ++ANAEL +YG VR TMVIRPYG AI+EA Q YLNVKFKET H
Subjt:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNH

XP_022136703.1 proline--tRNA ligase, chloroplastic/mitochondrial [Momordica charantia]8.6e-0874.42Show/hide
Query:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNH
        ++ANAEL +YG VR TMVIRPYG AI+EA Q YLNVKFKET H
Subjt:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNH

XP_024172424.1 proline--tRNA ligase, chloroplastic/mitochondrial [Rosa chinensis]1.1e-0774.42Show/hide
Query:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNH
        ++ANAEL +YG VR TMVIRPYG AI+EA Q YLNVKFKET H
Subjt:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNH

TrEMBL top hitse value%identityAlignment
A0A6A3CZI1 Prolyl-tRNA synthetase5.5e-0874.42Show/hide
Query:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNH
        ++ANAEL +YG VR TMVIRPYG AI+EA Q YLNVKFKET H
Subjt:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNH

A0A6J1B9H7 Prolyl-tRNA synthetase5.5e-0874.42Show/hide
Query:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNH
        ++ANAEL +YG VR TMVIRPYG AI+EA Q YLNVKFKET H
Subjt:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNH

A0A6J1C8A3 Prolyl-tRNA synthetase4.2e-0874.42Show/hide
Query:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNH
        ++ANAEL +YG VR TMVIRPYG AI+EA Q YLNVKFKET H
Subjt:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNH

B9RIU3 Prolyl-tRNA synthetase5.5e-0874.42Show/hide
Query:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNH
        ++ANAEL +YG VR TMVIRPYG AI+EA Q YLNVKFKET H
Subjt:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNH

G7J5P9 Prolyl-tRNA synthetase5.5e-0874.42Show/hide
Query:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNH
        ++ANAEL +YG VR TMVIRPYG AI+EA Q YLNVKFKET H
Subjt:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNH

SwissProt top hitse value%identityAlignment
A0Q2I3 Proline--tRNA ligase6.4e-0650Show/hide
Query:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNHRKEHI
        +V  AEL +Y  V+  M+IRPYG AI+E  Q YL+ KFKET H   ++
Subjt:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNHRKEHI

Q1AX25 Proline--tRNA ligase8.4e-0629.91Show/hide
Query:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNHRKEH--ILSTDKHCSEDYD---------MWLVIVDDDSFQLTRALKHLFARNENLIV
        +V  A+L +YG VR T  IRPYG AI+E  Q  L+ +FK T H   +  +L  + + +++ +          W+ +  DD  +   A++     +E++I 
Subjt:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNHRKEH--ILSTDKHCSEDYD---------MWLVIVDDDSFQLTRALKHLFARNENLIV

Query:  DPSLNHIHSLRKKLVML
        D     IHS R   V++
Subjt:  DPSLNHIHSLRKKLVML

Q72GF9 Proline--tRNA ligase5.4e-0548.94Show/hide
Query:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNHRKEH
        ++  AEL +YG VR T+V+RPYG AI+E  Q  L+  FKET H+  +
Subjt:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNHRKEH

Q8ESQ5 Proline--tRNA ligase2.4e-0532.43Show/hide
Query:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNHRK--------EHILSTDKHCSEDYD---MWLVIVDDDSFQLTRALKHLFARNENLIV
        +V  A+L +YG VR TM+I+PYG AI+E  +  L+  FKET H          E +L  +K   E +     W+    ++      A++     +E L  
Subjt:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNHRK--------EHILSTDKHCSEDYD---MWLVIVDDDSFQLTRALKHLFARNENLIV

Query:  DPSLNHIHSLR
        D   N+IHS R
Subjt:  DPSLNHIHSLR

Q9FYR6 Proline--tRNA ligase, chloroplastic/mitochondrial5.6e-1072.09Show/hide
Query:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNH
        ++A+AEL +YG VR TMVIRPYG AI+EA Q YLNVKFKET H
Subjt:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNH

Arabidopsis top hitse value%identityAlignment
AT5G52520.1 Class II aaRS and biotin synthetases superfamily protein4.0e-1172.09Show/hide
Query:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNH
        ++A+AEL +YG VR TMVIRPYG AI+EA Q YLNVKFKET H
Subjt:  MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGCCAACGCCGAGCTCACGGAATATGGTCATGTTCGAGTTACCATGGTTATTCGTCCCTATGGCTCCGCCATTTTCGAAGCAGATCAGGGTTATTTGAATGTTAA
GTTCAAGGAGACCAATCACAGGAAGGAACATATACTTTCCACAGACAAGCATTGCAGTGAAGACTATGATATGTGGTTAGTTATAGTTGACGATGATTCCTTTCAGCTAA
CCCGGGCTCTTAAACATCTATTTGCTAGAAATGAAAATTTGATTGTTGATCCCAGTTTAAACCATATTCATTCATTGAGAAAGAAGCTAGTCATGTTGCAGTTAGCTCTT
GTAACTGTAGGAGAGAAAGAACTTGAAGAAAAGCTTGGGGAGTACATAGACCCAGTTAAGCTAATGGCCCATTTCTGGGCGTTCATTGCTCATTAG
mRNA sequenceShow/hide mRNA sequence
AAGCCACGCTGGTTCCGTTCGCCACCACTAGCTGGTTGCTGGCTGCCTGGCTTGGTCCGCGGAGGCCGAAATTCGTGCCGTGACGACAACTCTAAGAATCGAGTTTTGGA
AGGAGCTATCACGCCTCAGTTACTGGACTTCAATCCATGGTAGCCAACGCCGAGCTCACGGAATATGGTCATGTTCGAGTTACCATGGTTATTCGTCCCTATGGCTCCGC
CATTTTCGAAGCAGATCAGGGTTATTTGAATGTTAAGTTCAAGGAGACCAATCACAGGAAGGAACATATACTTTCCACAGACAAGCATTGCAGTGAAGACTATGATATGT
GGTTAGTTATAGTTGACGATGATTCCTTTCAGCTAACCCGGGCTCTTAAACATCTATTTGCTAGAAATGAAAATTTGATTGTTGATCCCAGTTTAAACCATATTCATTCA
TTGAGAAAGAAGCTAGTCATGTTGCAGTTAGCTCTTGTAACTGTAGGAGAGAAAGAACTTGAAGAAAAGCTTGGGGAGTACATAGACCCAGTTAAGCTAATGGCCCATTT
CTGGGCGTTCATTGCTCATTAG
Protein sequenceShow/hide protein sequence
MVANAELTEYGHVRVTMVIRPYGSAIFEADQGYLNVKFKETNHRKEHILSTDKHCSEDYDMWLVIVDDDSFQLTRALKHLFARNENLIVDPSLNHIHSLRKKLVMLQLAL
VTVGEKELEEKLGEYIDPVKLMAHFWAFIAH