CuGenDBv2

Gene ID	Lsi07G002730
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	SAP30_Sin3_bdg domain-containing protein
Genome location	chr07:2962333..2966314
RNA-Seq Expression	Lsi07G002730
Synteny	Lsi07G002730
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0000118 - histone deacetylase complex (cellular component) GO:0003712 - transcription coregulator activity (molecular function) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR024145 - Histone deacetylase complex subunit SAP30/SAP30-like IPR025718 - Histone deacetylase complex subunit SAP30, Sin3 binding domain IPR038291 - SAP30, C-terminal domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044820.1 uncharacterized protein E6C27_scaffold74G001110 [Cucumis melo var. makuwa]

7.2e-97

85.46

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Query:  RSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLD
        +SPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWL               VLKNGVEVKLQRNALSVLEHPTGNENDE DLD
Subjt:  RSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLD

Query:  NSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIRPLAPSSSAKSN-----GEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQ
        NSSCSS+IGEKDNDFSSS+VFHKLSKPKVRQI+  APSSSAKS      GEIQSIHMPK GTRVKLGKLGTESLWRYIKHFNLVNSISN SRDQIL VVQ
Subjt:  NSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIRPLAPSSSAKSN-----GEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQ

Query:  RHFALQTSLNEASVMTEFIRAVKRRRD
        RHFALQTSLNEASVMTEFIRAVK+RR+
Subjt:  RHFALQTSLNEASVMTEFIRAVKRRRD

TYK16644.1 uncharacterized protein E5676_scaffold21G004740 [Cucumis melo var. makuwa]

7.2e-97

85.46

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Query:  RSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLD
        +SPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWL               VLKNGVEVKLQRNALSVLEHPTGNENDE DLD
Subjt:  RSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLD

Query:  NSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIRPLAPSSSAKSN-----GEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQ
        NSSCSS+IGEKDNDFSSS+VFHKLSKPKVRQI+  APSSSAKS      GEIQSIHMPK GTRVKLGKLGTESLWRYIKHFNLVNSISN SRDQIL VVQ
Subjt:  NSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIRPLAPSSSAKSN-----GEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQ

Query:  RHFALQTSLNEASVMTEFIRAVKRRRD
        RHFALQTSLNEASVMTEFIRAVK+RR+
Subjt:  RHFALQTSLNEASVMTEFIRAVKRRRD

XP_004146519.1 uncharacterized protein LOC101209634 [Cucumis sativus]

3.4e-99

86.34

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Query:  RSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLD
        +SPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWL               VLKNGVEVKLQRNALSVLEHPTGNENDEHDLD
Subjt:  RSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLD

Query:  NSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIRPLAPSSSAKSN-----GEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQ
        NSSCSS+IGEKDNDFSSS+VFHKLSKPKVRQI+P APSSSAKS      GEIQSIHMPK GTRV+LGKLGTESLWRYIKHFNLVNSISN SRDQILQVVQ
Subjt:  NSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIRPLAPSSSAKSN-----GEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQ

Query:  RHFALQTSLNEASVMTEFIRAVKRRRD
        RHFALQTSLNEASVMTEFIRAVK+RR+
Subjt:  RHFALQTSLNEASVMTEFIRAVKRRRD

XP_008452044.1 PREDICTED: uncharacterized protein LOC103493170 [Cucumis melo]

7.2e-97

85.46

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Query:  RSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLD
        +SPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWL               VLKNGVEVKLQRNALSVLEHPTGNENDE DLD
Subjt:  RSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLD

Query:  NSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIRPLAPSSSAKSN-----GEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQ
        NSSCSS+IGEKDNDFSSS+VFHKLSKPKVRQI+  APSSSAKS      GEIQSIHMPK GTRVKLGKLGTESLWRYIKHFNLVNSISN SRDQIL VVQ
Subjt:  NSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIRPLAPSSSAKSN-----GEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQ

Query:  RHFALQTSLNEASVMTEFIRAVKRRRD
        RHFALQTSLNEASVMTEFIRAVK+RR+
Subjt:  RHFALQTSLNEASVMTEFIRAVKRRRD

XP_022136863.1 uncharacterized protein LOC111008453 isoform X2 [Momordica charantia]

6.1e-96

84.65

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Query:  RSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLD
        +SPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVF            +VLKNGVEVKLQRNALSVLEHPTGNEND+HD D
Subjt:  RSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLD

Query:  NSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIRPLAPSSSAK------SNGEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVV
        NSSCSS+IGEKDNDFSSSIVFHKLSK KVRQIRP APSSSAK      S GEIQSIH+PK   RVKLGKLGTESLWRYI+HFNLVNSISNASRDQ+L VV
Subjt:  NSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIRPLAPSSSAK------SNGEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVV

Query:  QRHFALQTSLNEASVMTEFIRAVKRRRD
        QRHFALQT+LNEASVMTEFIRAVKRRR+
Subjt:  QRHFALQTSLNEASVMTEFIRAVKRRRD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KUM7 SAP30_Sin3_bdg domain-containing protein

1.7e-99

86.34

Show/hide

Query:  RSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLD
        +SPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWL               VLKNGVEVKLQRNALSVLEHPTGNENDEHDLD
Subjt:  RSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLD

Query:  NSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIRPLAPSSSAKSN-----GEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQ
        NSSCSS+IGEKDNDFSSS+VFHKLSKPKVRQI+P APSSSAKS      GEIQSIHMPK GTRV+LGKLGTESLWRYIKHFNLVNSISN SRDQILQVVQ
Subjt:  NSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIRPLAPSSSAKSN-----GEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQ

Query:  RHFALQTSLNEASVMTEFIRAVKRRRD
        RHFALQTSLNEASVMTEFIRAVK+RR+
Subjt:  RHFALQTSLNEASVMTEFIRAVKRRRD

A0A1S3BU28 uncharacterized protein LOC103493170

3.5e-97

85.46

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Query:  RSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLD
        +SPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWL               VLKNGVEVKLQRNALSVLEHPTGNENDE DLD
Subjt:  RSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLD

Query:  NSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIRPLAPSSSAKSN-----GEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQ
        NSSCSS+IGEKDNDFSSS+VFHKLSKPKVRQI+  APSSSAKS      GEIQSIHMPK GTRVKLGKLGTESLWRYIKHFNLVNSISN SRDQIL VVQ
Subjt:  NSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIRPLAPSSSAKSN-----GEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQ

Query:  RHFALQTSLNEASVMTEFIRAVKRRRD
        RHFALQTSLNEASVMTEFIRAVK+RR+
Subjt:  RHFALQTSLNEASVMTEFIRAVKRRRD

A0A5A7TNP9 SAP30_Sin3_bdg domain-containing protein

3.5e-97

85.46

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Query:  RSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLD
        +SPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWL               VLKNGVEVKLQRNALSVLEHPTGNENDE DLD
Subjt:  RSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLD

Query:  NSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIRPLAPSSSAKSN-----GEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQ
        NSSCSS+IGEKDNDFSSS+VFHKLSKPKVRQI+  APSSSAKS      GEIQSIHMPK GTRVKLGKLGTESLWRYIKHFNLVNSISN SRDQIL VVQ
Subjt:  NSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIRPLAPSSSAKSN-----GEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQ

Query:  RHFALQTSLNEASVMTEFIRAVKRRRD
        RHFALQTSLNEASVMTEFIRAVK+RR+
Subjt:  RHFALQTSLNEASVMTEFIRAVKRRRD

A0A5D3D093 SAP30_Sin3_bdg domain-containing protein

3.5e-97

85.46

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Query:  RSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLD
        +SPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWL               VLKNGVEVKLQRNALSVLEHPTGNENDE DLD
Subjt:  RSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLD

Query:  NSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIRPLAPSSSAKSN-----GEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQ
        NSSCSS+IGEKDNDFSSS+VFHKLSKPKVRQI+  APSSSAKS      GEIQSIHMPK GTRVKLGKLGTESLWRYIKHFNLVNSISN SRDQIL VVQ
Subjt:  NSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIRPLAPSSSAKSN-----GEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQ

Query:  RHFALQTSLNEASVMTEFIRAVKRRRD
        RHFALQTSLNEASVMTEFIRAVK+RR+
Subjt:  RHFALQTSLNEASVMTEFIRAVKRRRD

A0A6J1C8P1 uncharacterized protein LOC111008453 isoform X2

2.9e-96

84.65

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Query:  RSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLD
        +SPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVF            +VLKNGVEVKLQRNALSVLEHPTGNEND+HD D
Subjt:  RSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLD

Query:  NSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIRPLAPSSSAK------SNGEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVV
        NSSCSS+IGEKDNDFSSSIVFHKLSK KVRQIRP APSSSAK      S GEIQSIH+PK   RVKLGKLGTESLWRYI+HFNLVNSISNASRDQ+L VV
Subjt:  NSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIRPLAPSSSAK------SNGEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVV

Query:  QRHFALQTSLNEASVMTEFIRAVKRRRD
        QRHFALQT+LNEASVMTEFIRAVKRRR+
Subjt:  QRHFALQTSLNEASVMTEFIRAVKRRRD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G19330.1 unknown protein

1.1e-42

Show/hide

Query:  SGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLDNSSCSSE
        S +EELSVLPRHTKV+VTGNNRTKSVL+GLQGVVKKAVGLGGWHWL               VL NG+EVKLQRNALSVLE PTGNE D+ DLD  +    
Subjt:  SGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLDNSSCSSE

Query:  IGEKDNDFSSSIVFHKLSKPKVR-----------QIRPLAPSSSAKSNGEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQR
          +    F +S    K  K K+R             R L+  S +KS+G       P    +V L KL   +L  Y +HFNLV++I N S++Q++ +VQR
Subjt:  IGEKDNDFSSSIVFHKLSKPKVR-----------QIRPLAPSSSAKSNGEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQR

Query:  HFALQTSLNEASVMTEFIRAVKRRR
        HF  Q  ++E  V+  F++A KR +
Subjt:  HFALQTSLNEASVMTEFIRAVKRRR

AT1G19330.2 unknown protein

4.1e-42

47.95

Show/hide

Query:  SGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEH-DLDNSSCS-
        S +EELSVLPRHTKV+VTGNNRTKSVL+GLQGVVKKAVGLGGWHWL               VL NG+EVKLQRNALSVLE PTGNE D+  D +N+  + 
Subjt:  SGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEH-DLDNSSCS-

Query:  SEIGEKD--NDFSSSIVFHKLSKPKVRQI-RPLAPSSSAKSNGEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQRHFALQT
        S++  +D      S +   + S+   + + R L+  S +KS+G       P    +V L KL   +L  Y +HFNLV++I N S++Q++ +VQRHF  Q 
Subjt:  SEIGEKD--NDFSSSIVFHKLSKPKVRQI-RPLAPSSSAKSNGEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQRHFALQT

Query:  SLNEASVMTEFIRAVKRRR
         ++E  V+  F++A KR +
Subjt:  SLNEASVMTEFIRAVKRRR

AT1G19330.3 unknown protein

1.4e-42

47.96

Show/hide

Query:  SGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLDNSSCSSE
        S +EELSVLPRHTKV+VTGNNRTKSVL+GLQGVVKKAVGLGGWHWL               VL NG+EVKLQRNALSVLE PTGNE D+ DLD  +    
Subjt:  SGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLDNSSCSSE

Query:  IGEKDNDFSSSIVFHKLSKPKVRQIR-------PLAPSSSAKSNGEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQRHFAL
          +    F +S    K  K K+R  R        ++ S S+ S  +      P+   +V L KL   +L  Y +HFNLV++I N S++Q++ +VQRHF  
Subjt:  IGEKDNDFSSSIVFHKLSKPKVRQIR-------PLAPSSSAKSNGEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQRHFAL

Query:  QTSLNEASVMTEFIRAVKRRR
        Q  ++E  V+  F++A KR +
Subjt:  QTSLNEASVMTEFIRAVKRRR

AT1G75060.1 unknown protein

8.3e-43

48.18

Show/hide

Query:  RSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLD
        +S F + S +EELSVLPRHTKV+VTGNNRTKSVL+GLQGVVKKAVGLGGWHWL               VL NG+EVKLQRNALSVLEHPTGNE D +DL+
Subjt:  RSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLD

Query:  NSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIR----PLAPSSSAKSNGEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQR
            +      D     ++  HK  K   R  R     L    S  S+ +I SI  P+   +V L KL   +L RY +HFNLV+++ N +++Q++ ++QR
Subjt:  NSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIR----PLAPSSSAKSNGEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQR

Query:  HFALQTSLNEASVMTEFIRA
        HF  Q  ++E  V+  F++A
Subjt:  HFALQTSLNEASVMTEFIRA

AT1G75060.2 unknown protein

2.7e-41

48.18

Show/hide

Query:  RSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLD
        +S F + S +EELSVLPRHTKV+VTGNNRTKSVL+GLQGVVKKAVGLGGWHWL               VL NG+EVKLQRNALSVLEHPTGNE D +DL+
Subjt:  RSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLD

Query:  NSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIR----PLAPSSSAKSNGEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQR
            +      D     ++  HK  K   R  R     L    S  S+ +I SI  P+    V L KL   +L RY +HFNLV+++ N +++Q++ ++QR
Subjt:  NSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIR----PLAPSSSAKSNGEIQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQR

Query:  HFALQTSLNEASVMTEFIRA
        HF  Q  ++E  V+  F++A
Subjt:  HFALQTSLNEASVMTEFIRA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGGAGTTCAACATCTGTGAAGTTAGATTCCACTGAGGCAAGCAAAATTCATAATGCCTTACTGATCAGCGAAAGAGTGCTGTTGGTTATTATAGCTCAAATTGAGCT
TGAATTCTTGCACTATATGGACCACAGGGCTTCAGGGTTCGATTTAAGTTTTAACTTTCGTCATCGCTACCTGGAGGAAAGACAGTTAGGAAGGAAGAAAAATGCTGGAA
CCAGATCTCCTTTCCGTGAGGAGAGTGGGGATGAAGAGCTTTCAGTTCTTCCAAGGCACACTAAAGTTATTGTCACTGGAAATAACAGAACAAAGTCTGTTTTATTGGGA
TTGCAAGGCGTGGTTAAGAAGGCCGTTGGCCTTGGAGGCTGGCATTGGCTGGTTTTTAAGCTAGAAGCCTGTGACTGGAAGGAATTCATGGATTACGTTTTGAAAAATGG
GGTTGAAGTGAAGCTGCAAAGGAATGCATTGAGTGTGCTGGAACATCCCACAGGAAACGAAAATGATGAACATGATTTGGACAACTCAAGTTGTAGCTCCGAGATCGGGG
AGAAGGATAATGATTTCTCTAGCAGCATTGTTTTCCACAAACTTAGCAAACCAAAAGTTAGGCAGATTAGGCCATTGGCTCCATCTTCATCAGCAAAGTCAAATGGAGAA
ATTCAGTCTATTCACATGCCAAAGCCAGGGACGCGGGTCAAACTGGGGAAACTAGGAACAGAGTCTTTGTGGAGATATATCAAGCACTTCAATCTAGTGAATAGTATTTC
AAATGCGTCAAGGGACCAAATCCTTCAAGTTGTGCAACGGCATTTTGCATTACAGACAAGTTTGAACGAGGCATCGGTGATGACTGAATTCATTCGAGCTGTTAAGAGAC
GAAGAGACTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGSSTSVKLDSTEASKIHNALLISERVLLVIIAQIELEFLHYMDHRASGFDLSFNFRHRYLEERQLGRKKNAGTRSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLG
LQGVVKKAVGLGGWHWLVFKLEACDWKEFMDYVLKNGVEVKLQRNALSVLEHPTGNENDEHDLDNSSCSSEIGEKDNDFSSSIVFHKLSKPKVRQIRPLAPSSSAKSNGE
IQSIHMPKPGTRVKLGKLGTESLWRYIKHFNLVNSISNASRDQILQVVQRHFALQTSLNEASVMTEFIRAVKRRRD

Lsi07G002730 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome