CuGenDBv2

Gene ID	Lsi07G003300
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	endonuclease MutS2 isoform X1
Genome location	chr07:3487926..3488876
RNA-Seq Expression	Lsi07G003300
Synteny	Lsi07G003300
Gene Ontology terms	GO:0006298 - mismatch repair (biological process) GO:0045910 - negative regulation of DNA recombination (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0004519 - endonuclease activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0030983 - mismatched DNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_038893974.1 endonuclease MutS2 isoform X2 [Benincasa hispida]

1.8e-34

85.56

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Query:  MLCAALVAHPL--TWTWINSSTLPVPFKFQNRAASVHFSLSANIPVSNDIRYNRTQHSIHLDSLRALEWDKLCDSVASFARTSLGRQAIK
        MLCAAL  HPL  TWTW NSSTLPVP KFQ+RAASVH SLSANIPV +DIR NRTQHS+HLDSLRALEWDKLCDSVASF RTSLGRQAIK
Subjt:  MLCAALVAHPL--TWTWINSSTLPVPFKFQNRAASVHFSLSANIPVSNDIRYNRTQHSIHLDSLRALEWDKLCDSVASFARTSLGRQAIK

XP_038894019.1 endonuclease MutS2 isoform X8 [Benincasa hispida]

1.8e-34

85.56

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Query:  MLCAALVAHPL--TWTWINSSTLPVPFKFQNRAASVHFSLSANIPVSNDIRYNRTQHSIHLDSLRALEWDKLCDSVASFARTSLGRQAIK
        MLCAAL  HPL  TWTW NSSTLPVP KFQ+RAASVH SLSANIPV +DIR NRTQHS+HLDSLRALEWDKLCDSVASF RTSLGRQAIK
Subjt:  MLCAALVAHPL--TWTWINSSTLPVPFKFQNRAASVHFSLSANIPVSNDIRYNRTQHSIHLDSLRALEWDKLCDSVASFARTSLGRQAIK

XP_038894027.1 endonuclease MutS2 isoform X9 [Benincasa hispida]

1.1e-34

82.98

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Query:  MLCAALVAHPL--TWTWINSSTLPVPFKFQNRAASVHFSLSANIPVSNDIRYNRTQHSIHLDSLRALEWDKLCDSVASFARTSLGRQAIKLGGA
        MLCAAL  HPL  TWTW NSSTLPVP KFQ+RAASVH SLSANIPV +DIR NRTQHS+HLDSLRALEWDKLCDSVASF RTSLGRQAIK+  A
Subjt:  MLCAALVAHPL--TWTWINSSTLPVPFKFQNRAASVHFSLSANIPVSNDIRYNRTQHSIHLDSLRALEWDKLCDSVASFARTSLGRQAIKLGGA

XP_038894074.1 endonuclease MutS2 isoform X11 [Benincasa hispida]

1.8e-34

85.56

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Query:  MLCAALVAHPL--TWTWINSSTLPVPFKFQNRAASVHFSLSANIPVSNDIRYNRTQHSIHLDSLRALEWDKLCDSVASFARTSLGRQAIK
        MLCAAL  HPL  TWTW NSSTLPVP KFQ+RAASVH SLSANIPV +DIR NRTQHS+HLDSLRALEWDKLCDSVASF RTSLGRQAIK
Subjt:  MLCAALVAHPL--TWTWINSSTLPVPFKFQNRAASVHFSLSANIPVSNDIRYNRTQHSIHLDSLRALEWDKLCDSVASFARTSLGRQAIK

XP_038894089.1 endonuclease MutS2 isoform X13 [Benincasa hispida]

1.8e-34

85.56

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Query:  MLCAALVAHPL--TWTWINSSTLPVPFKFQNRAASVHFSLSANIPVSNDIRYNRTQHSIHLDSLRALEWDKLCDSVASFARTSLGRQAIK
        MLCAAL  HPL  TWTW NSSTLPVP KFQ+RAASVH SLSANIPV +DIR NRTQHS+HLDSLRALEWDKLCDSVASF RTSLGRQAIK
Subjt:  MLCAALVAHPL--TWTWINSSTLPVPFKFQNRAASVHFSLSANIPVSNDIRYNRTQHSIHLDSLRALEWDKLCDSVASFARTSLGRQAIK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CHX9 endonuclease MutS2 isoform X2

3.4e-31

80.68

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Query:  MLCAALVAHPLTWTWINSSTLPVPFKFQNRAASVHFSLSANIPVSNDIRYNRTQHSIHLDSLRALEWDKLCDSVASFARTSLGRQAIK
        M CA+L  HPLTWTWI+ STLPVP   +NRAAS+HFSLSAN PVSND   N TQHSI LDSLRALEWDKLCDSVASFARTSLGRQAIK
Subjt:  MLCAALVAHPLTWTWINSSTLPVPFKFQNRAASVHFSLSANIPVSNDIRYNRTQHSIHLDSLRALEWDKLCDSVASFARTSLGRQAIK

A0A1S3CHZ5 endonuclease MutS2 isoform X1

3.4e-31

80.68

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Query:  MLCAALVAHPLTWTWINSSTLPVPFKFQNRAASVHFSLSANIPVSNDIRYNRTQHSIHLDSLRALEWDKLCDSVASFARTSLGRQAIK
        M CA+L  HPLTWTWI+ STLPVP   +NRAAS+HFSLSAN PVSND   N TQHSI LDSLRALEWDKLCDSVASFARTSLGRQAIK
Subjt:  MLCAALVAHPLTWTWINSSTLPVPFKFQNRAASVHFSLSANIPVSNDIRYNRTQHSIHLDSLRALEWDKLCDSVASFARTSLGRQAIK

A0A1S3CIG3 endonuclease MutS2 isoform X3

3.4e-31

80.68

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Query:  MLCAALVAHPLTWTWINSSTLPVPFKFQNRAASVHFSLSANIPVSNDIRYNRTQHSIHLDSLRALEWDKLCDSVASFARTSLGRQAIK
        M CA+L  HPLTWTWI+ STLPVP   +NRAAS+HFSLSAN PVSND   N TQHSI LDSLRALEWDKLCDSVASFARTSLGRQAIK
Subjt:  MLCAALVAHPLTWTWINSSTLPVPFKFQNRAASVHFSLSANIPVSNDIRYNRTQHSIHLDSLRALEWDKLCDSVASFARTSLGRQAIK

A0A1S3CJJ8 endonuclease MutS2 isoform X4

3.4e-31

80.68

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Query:  MLCAALVAHPLTWTWINSSTLPVPFKFQNRAASVHFSLSANIPVSNDIRYNRTQHSIHLDSLRALEWDKLCDSVASFARTSLGRQAIK
        M CA+L  HPLTWTWI+ STLPVP   +NRAAS+HFSLSAN PVSND   N TQHSI LDSLRALEWDKLCDSVASFARTSLGRQAIK
Subjt:  MLCAALVAHPLTWTWINSSTLPVPFKFQNRAASVHFSLSANIPVSNDIRYNRTQHSIHLDSLRALEWDKLCDSVASFARTSLGRQAIK

A0A5D3BZK6 Endonuclease MutS2 isoform X1

3.4e-31

80.68

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Query:  MLCAALVAHPLTWTWINSSTLPVPFKFQNRAASVHFSLSANIPVSNDIRYNRTQHSIHLDSLRALEWDKLCDSVASFARTSLGRQAIK
        M CA+L  HPLTWTWI+ STLPVP   +NRAAS+HFSLSAN PVSND   N TQHSI LDSLRALEWDKLCDSVASFARTSLGRQAIK
Subjt:  MLCAALVAHPLTWTWINSSTLPVPFKFQNRAASVHFSLSANIPVSNDIRYNRTQHSIHLDSLRALEWDKLCDSVASFARTSLGRQAIK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G54090.1 DNA mismatch repair protein MutS, type 2

5.3e-08

86.21

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Query:  DSLRALEWDKLCDSVASFARTSLGRQAIK
        DSLR LEWDKLCD VASFARTSLGR+A K
Subjt:  DSLRALEWDKLCDSVASFARTSLGRQAIK

Sequences

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CDS sequence

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ATGCTCTGTGCAGCTCTTGTTGCGCATCCCCTCACCTGGACCTGGATCAACTCTTCTACACTGCCGGTGCCGTTTAAATTCCAGAATCGAGCTGCCTCCGTACACTTCTC
CCTCTCTGCAAACATTCCCGTCAGCAATGACATTAGATATAACAGAACCCAACATTCAATCCACCTGGACAGTCTCAGAGCGCTGGAATGGGATAAACTTTGCGATTCCG
TTGCTTCCTTCGCCCGCACTTCTCTGGGGCGTCAAGCTATCAAGCTTGGTGGTGCGTGGATTCTTCCTCACGCCTCCACTGGTTCAGTTTTTGAGTAG

mRNA sequence

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GGTAGATGTTACTATGTTGGAACGTAGAGATATTAGCGGGAGTGGCGAGTTGTTAGGACAAAGCTCTCTCGTCCCTTGTAGGTGGCAGGAAGGGTAAAACGATGCTCTGT
GCAGCTCTTGTTGCGCATCCCCTCACCTGGACCTGGATCAACTCTTCTACACTGCCGGTGCCGTTTAAATTCCAGAATCGAGCTGCCTCCGTACACTTCTCCCTCTCTGC
AAACATTCCCGTCAGCAATGACATTAGATATAACAGAACCCAACATTCAATCCACCTGGACAGTCTCAGAGCGCTGGAATGGGATAAACTTTGCGATTCCGTTGCTTCCT
TCGCCCGCACTTCTCTGGGGCGTCAAGCTATCAAGCTTGGTGGTGCGTGGATTCTTCCTCACGCCTCCACTGGTTCAGTTTTTGAGTAG

Protein sequence

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MLCAALVAHPLTWTWINSSTLPVPFKFQNRAASVHFSLSANIPVSNDIRYNRTQHSIHLDSLRALEWDKLCDSVASFARTSLGRQAIKLGGAWILPHASTGSVFE

Lsi07G003300 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome