; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi07G003790 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G003790
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionpoly(A) polymerase I isoform X1
Genome locationchr07:4073139..4074551
RNA-Seq ExpressionLsi07G003790
SyntenyLsi07G003790
Gene Ontology termsGO:0001680 - tRNA 3'-terminal CCA addition (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038894712.1 poly(A) polymerase I isoform X4 [Benincasa hispida]1.5e-7584.92Show/hide
Query:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQAP
        IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASF EIVESNHKESDYSL+EQVVDLAVSV+AV+ KMTN QYVSQAMIKYPQAP
Subjt:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQAP

Query:  WSDLVFIPQALS---------TRGKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYPQNQNGQFNNVEPTER
        WSDLVFIPQALS          R  ERGP+PKRSRTI+HDSLAMG L EVRHVFARIVF+TV+P+ QNGQFNNVEPT+R
Subjt:  WSDLVFIPQALS---------TRGKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYPQNQNGQFNNVEPTER

XP_038894721.1 poly(A) polymerase I isoform X5 [Benincasa hispida]1.5e-7584.92Show/hide
Query:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQAP
        IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASF EIVESNHKESDYSL+EQVVDLAVSV+AV+ KMTN QYVSQAMIKYPQAP
Subjt:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQAP

Query:  WSDLVFIPQALS---------TRGKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYPQNQNGQFNNVEPTER
        WSDLVFIPQALS          R  ERGP+PKRSRTI+HDSLAMG L EVRHVFARIVF+TV+P+ QNGQFNNVEPT+R
Subjt:  WSDLVFIPQALS---------TRGKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYPQNQNGQFNNVEPTER

XP_038894732.1 poly(A) polymerase I isoform X6 [Benincasa hispida]1.5e-7584.92Show/hide
Query:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQAP
        IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASF EIVESNHKESDYSL+EQVVDLAVSV+AV+ KMTN QYVSQAMIKYPQAP
Subjt:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQAP

Query:  WSDLVFIPQALS---------TRGKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYPQNQNGQFNNVEPTER
        WSDLVFIPQALS          R  ERGP+PKRSRTI+HDSLAMG L EVRHVFARIVF+TV+P+ QNGQFNNVEPT+R
Subjt:  WSDLVFIPQALS---------TRGKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYPQNQNGQFNNVEPTER

XP_038894742.1 poly(A) polymerase I isoform X7 [Benincasa hispida]1.5e-7584.92Show/hide
Query:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQAP
        IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASF EIVESNHKESDYSL+EQVVDLAVSV+AV+ KMTN QYVSQAMIKYPQAP
Subjt:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQAP

Query:  WSDLVFIPQALS---------TRGKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYPQNQNGQFNNVEPTER
        WSDLVFIPQALS          R  ERGP+PKRSRTI+HDSLAMG L EVRHVFARIVF+TV+P+ QNGQFNNVEPT+R
Subjt:  WSDLVFIPQALS---------TRGKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYPQNQNGQFNNVEPTER

XP_038894758.1 poly(A) polymerase I isoform X9 [Benincasa hispida]1.5e-7584.92Show/hide
Query:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQAP
        IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASF EIVESNHKESDYSL+EQVVDLAVSV+AV+ KMTN QYVSQAMIKYPQAP
Subjt:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQAP

Query:  WSDLVFIPQALS---------TRGKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYPQNQNGQFNNVEPTER
        WSDLVFIPQALS          R  ERGP+PKRSRTI+HDSLAMG L EVRHVFARIVF+TV+P+ QNGQFNNVEPT+R
Subjt:  WSDLVFIPQALS---------TRGKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYPQNQNGQFNNVEPTER

TrEMBL top hitse value%identityAlignment
A0A0A0KTW7 Uncharacterized protein2.2e-7582.78Show/hide
Query:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQAP
        IALLAFHKALVDQPQDPVVVAAFSLA+HSGGSLYEA+EIAQNISQPH SF EIVESNHKESDYSL+EQV+DLA SVN+VLWKMTN+QYVS+AMIKYPQAP
Subjt:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQAP

Query:  WSDLVFIPQALS----------TRGKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYPQNQNGQFNNVEPTER
        WSDLVFI Q+LS           RG E G VPKRSR I+HDSLAMGNLSEVRHVFARIVF+TVYP+NQNGQFNNVEP ER
Subjt:  WSDLVFIPQALS----------TRGKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYPQNQNGQFNNVEPTER

A0A6J1CVM8 uncharacterized protein LOC111015199 isoform X12.0e-6876.11Show/hide
Query:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQAP
        IA+LAFH ALVD+PQDP+VVAAFSLA+H+GGSLYEAIEIA+NISQPH SF EIVE+NH+ESDY LM +VV+LA SV A+LWKMT++ YVSQAMI+YPQAP
Subjt:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQAP

Query:  WSDLVFIPQALS----------TRGKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYPQNQNGQFNNVEPTER
        WSDLVFIPQALS           RGKE G VPKRSRTI+H+SLA+GNLSEVRHVFARIVF+TVYP N+N QFN VEPTER
Subjt:  WSDLVFIPQALS----------TRGKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYPQNQNGQFNNVEPTER

A0A6J1CXK6 uncharacterized protein LOC111015199 isoform X22.0e-6876.11Show/hide
Query:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQAP
        IA+LAFH ALVD+PQDP+VVAAFSLA+H+GGSLYEAIEIA+NISQPH SF EIVE+NH+ESDY LM +VV+LA SV A+LWKMT++ YVSQAMI+YPQAP
Subjt:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQAP

Query:  WSDLVFIPQALS----------TRGKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYPQNQNGQFNNVEPTER
        WSDLVFIPQALS           RGKE G VPKRSRTI+H+SLA+GNLSEVRHVFARIVF+TVYP N+N QFN VEPTER
Subjt:  WSDLVFIPQALS----------TRGKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYPQNQNGQFNNVEPTER

A0A6J1GVG7 uncharacterized protein LOC1114578021.2e-7382.12Show/hide
Query:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQAP
        IALLAFHKALVDQPQDP+VVAAFSLAVHS GSLYEAIEIAQ+ISQPHASF EI+ESNHKES+Y+LM+QVVDLAVSVNAVLWKMT++QYVSQAMI YPQAP
Subjt:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQAP

Query:  WSDLVFIPQALS----------TRGKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYPQNQNGQFNNVEPTE
        WSDLVFIPQALS           RGKER P+PKRSRTI+HDSLA+GNLSEVRHVFARIVF TVYP+NQN Q NNV+ TE
Subjt:  WSDLVFIPQALS----------TRGKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYPQNQNGQFNNVEPTE

A0A6J1J0A7 uncharacterized protein LOC1114800732.8e-7583.33Show/hide
Query:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQAP
        IALLAFHKALVDQPQDP+VVAAFSLAVHS GSLYEAIEIAQ+ISQPHASF EI+ESNHKES+Y+LM+QVVDLAVSVNAVLWKMT++QYVSQAMI YPQAP
Subjt:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQAP

Query:  WSDLVFIPQALS----------TRGKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYPQNQNGQFNNVEPTER
        WSDLVFIPQALS           RGKER P+PKRSRTIDHDSLA+GNLSEVRHVFARIVF TVYP+NQN Q NNVE TER
Subjt:  WSDLVFIPQALS----------TRGKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYPQNQNGQFNNVEPTER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G28090.1 Polynucleotide adenylyltransferase family protein2.2e-3245.88Show/hide
Query:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHAS-FDEI--VESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYP
        I +LAFHKALVDQP+DP VVA+F LA++S  SL EAI IA++ S+ H S F E+   E +  +S+  + +QV+ LA S+ +   K+ N  Y++ AM KYP
Subjt:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHAS-FDEI--VESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYP

Query:  QAPWSDLVFIPQALSTR------------GKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYP
        QAP SD+VF+ + +  R             +ER  VP   R I++ SLA+G+  E R VFARIVF+T+YP
Subjt:  QAPWSDLVFIPQALSTR------------GKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYP

AT1G28090.2 Polynucleotide adenylyltransferase family protein2.2e-3245.88Show/hide
Query:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHAS-FDEI--VESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYP
        I +LAFHKALVDQP+DP VVA+F LA++S  SL EAI IA++ S+ H S F E+   E +  +S+  + +QV+ LA S+ +   K+ N  Y++ AM KYP
Subjt:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHAS-FDEI--VESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYP

Query:  QAPWSDLVFIPQALSTR------------GKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYP
        QAP SD+VF+ + +  R             +ER  VP   R I++ SLA+G+  E R VFARIVF+T+YP
Subjt:  QAPWSDLVFIPQALSTR------------GKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYP

AT1G28090.3 Polynucleotide adenylyltransferase family protein2.2e-3245.88Show/hide
Query:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHAS-FDEI--VESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYP
        I +LAFHKALVDQP+DP VVA+F LA++S  SL EAI IA++ S+ H S F E+   E +  +S+  + +QV+ LA S+ +   K+ N  Y++ AM KYP
Subjt:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHAS-FDEI--VESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYP

Query:  QAPWSDLVFIPQALSTR------------GKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYP
        QAP SD+VF+ + +  R             +ER  VP   R I++ SLA+G+  E R VFARIVF+T+YP
Subjt:  QAPWSDLVFIPQALSTR------------GKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYP

AT3G48830.1 polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein1.2e-2247.32Show/hide
Query:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPH-ASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQA
        + +LA HKAL DQP+ P VVAAFSLAVH+GG + EA++  + +++PH  SF E++E    +S  +L+++V+D   S+   L +MT+ +++S+AM  YPQA
Subjt:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPH-ASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQA

Query:  PWSDLVFIPQAL
        P+SD+VFIP  L
Subjt:  PWSDLVFIPQAL

AT5G23690.1 Polynucleotide adenylyltransferase family protein9.1e-3446.75Show/hide
Query:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPH-ASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQA
        IA+LAFHKAL D+P+ P+VVAAFSLAVH+ G + EA+EI + I++PH  SF E+VE        +L+++V+DL  S+   L +MT+  ++S+AM  YPQA
Subjt:  IALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPH-ASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQA

Query:  PWSDLVFIPQALSTRG-----------KERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYPQN
        P+SDLVFIP  L  R               G   K+   I++ SL  G   E+RHVFAR+VF+TV+P N
Subjt:  PWSDLVFIPQALSTRG-----------KERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYPQN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATTGCTCTTTTGGCATTTCATAAAGCTTTGGTTGACCAGCCTCAAGATCCAGTGGTTGTTGCAGCATTTAGCCTTGCTGTCCATAGTGGTGGATCCTTGTATGA
AGCAATCGAAATAGCCCAAAATATCTCGCAGCCACACGCATCATTTGATGAAATAGTAGAAAGTAACCACAAAGAATCAGATTATTCACTGATGGAACAGGTTGTTGATC
TTGCAGTTTCAGTGAATGCCGTGTTATGGAAGATGACCAATAACCAGTATGTTTCGCAAGCTATGATCAAATATCCTCAAGCACCTTGGTCAGATCTGGTTTTTATCCCA
CAGGCTTTGTCAACGAGGGGCAAGGAAAGGGGACCGGTCCCGAAAAGAAGTAGAACAATCGACCATGATTCCTTGGCTATGGGGAACTTATCAGAGGTTCGACATGTTTT
TGCTAGAATTGTTTTCAACACAGTTTACCCTCAAAACCAAAACGGGCAGTTCAATAATGTCGAACCGACCGAGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGATTGCTCTTTTGGCATTTCATAAAGCTTTGGTTGACCAGCCTCAAGATCCAGTGGTTGTTGCAGCATTTAGCCTTGCTGTCCATAGTGGTGGATCCTTGTATGA
AGCAATCGAAATAGCCCAAAATATCTCGCAGCCACACGCATCATTTGATGAAATAGTAGAAAGTAACCACAAAGAATCAGATTATTCACTGATGGAACAGGTTGTTGATC
TTGCAGTTTCAGTGAATGCCGTGTTATGGAAGATGACCAATAACCAGTATGTTTCGCAAGCTATGATCAAATATCCTCAAGCACCTTGGTCAGATCTGGTTTTTATCCCA
CAGGCTTTGTCAACGAGGGGCAAGGAAAGGGGACCGGTCCCGAAAAGAAGTAGAACAATCGACCATGATTCCTTGGCTATGGGGAACTTATCAGAGGTTCGACATGTTTT
TGCTAGAATTGTTTTCAACACAGTTTACCCTCAAAACCAAAACGGGCAGTTCAATAATGTCGAACCGACCGAGAGATGA
Protein sequenceShow/hide protein sequence
MKIALLAFHKALVDQPQDPVVVAAFSLAVHSGGSLYEAIEIAQNISQPHASFDEIVESNHKESDYSLMEQVVDLAVSVNAVLWKMTNNQYVSQAMIKYPQAPWSDLVFIP
QALSTRGKERGPVPKRSRTIDHDSLAMGNLSEVRHVFARIVFNTVYPQNQNGQFNNVEPTER