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Lsi07G004060 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G004060
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTransmembrane protein
Genome locationchr07:4375169..4375585
RNA-Seq ExpressionLsi07G004060
SyntenyLsi07G004060
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044487.1 putative transmembrane protein [Cucumis melo var. makuwa]2.6e-4991.38Show/hide
Query:  MADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIASFLLHALRFSIRS
        M +DDDPWLAPDKLYHFLLCF+LTILFAS ALHTRYPFIRRHSILIGSV+SL AGAAKEVADELGFFKSAGASTRDAVADLIGVL+ASFLLHALRFSIRS
Subjt:  MADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIASFLLHALRFSIRS

Query:  C-GDKEAKPNRDILMV
          GDKEA PNRDILMV
Subjt:  C-GDKEAKPNRDILMV

KAE8649070.1 hypothetical protein Csa_014719 [Cucumis sativus]2.0e-4982.44Show/hide
Query:  QNSKSLDQKIRARMADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIA
        + +K   +K+ A M +DDDPWLAPDK YHFLLCF+LTILFAS ALHTRYPFIRRHSILIGSV+SLFAGAAKEVADELGFFKSAGASTRDAVAD IGVLIA
Subjt:  QNSKSLDQKIRARMADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIA

Query:  SFLLHALRFSIRS---CGDKEAKPNRDILMV
        SFLLHALRFSIRS    G KEA PNRDILMV
Subjt:  SFLLHALRFSIRS---CGDKEAKPNRDILMV

XP_008454165.1 PREDICTED: uncharacterized protein LOC103494650 [Cucumis melo]1.8e-5089.34Show/hide
Query:  QKIRARMADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIASFLLHAL
        +KI A M +DDDPWLAPDKLYHFLLCF+LTILFAS ALHTRYPFIRRHSILIGSV+SL AGAAKEVADELGFFKSAGASTRDAVADLIGVL+ASFLLHAL
Subjt:  QKIRARMADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIASFLLHAL

Query:  RFSIRSC-GDKEAKPNRDILMV
        RFSIRS  GDKEA PNRDILMV
Subjt:  RFSIRSC-GDKEAKPNRDILMV

XP_011653000.1 uncharacterized protein LOC105435165 [Cucumis sativus]2.9e-4888.98Show/hide
Query:  MADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIASFLLHALRFSIRS
        M +DDDPWLAPDK YHFLLCF+LTILFAS ALHTRYPFIRRHSILIGSV+SLFAGAAKEVADELGFFKSAGASTRDAVAD IGVLIASFLLHALRFSIRS
Subjt:  MADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIASFLLHALRFSIRS

Query:  ---CGDKEAKPNRDILMV
            G KEA PNRDILMV
Subjt:  ---CGDKEAKPNRDILMV

XP_038890690.1 uncharacterized protein LOC120080188 [Benincasa hispida]5.8e-5792.8Show/hide
Query:  KSLDQKIRARMADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIASFL
        ++LDQKIRA+M DDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDA+ADLIGVLIASFL
Subjt:  KSLDQKIRARMADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIASFL

Query:  LHALRFSIRSCGDKEAKPNRDILMV
        LH LRFSIRS GDKEA P+RDILMV
Subjt:  LHALRFSIRSCGDKEAKPNRDILMV

TrEMBL top hitse value%identityAlignment
A0A0A0KYM1 Uncharacterized protein1.4e-4888.98Show/hide
Query:  MADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIASFLLHALRFSIRS
        M +DDDPWLAPDK YHFLLCF+LTILFAS ALHTRYPFIRRHSILIGSV+SLFAGAAKEVADELGFFKSAGASTRDAVAD IGVLIASFLLHALRFSIRS
Subjt:  MADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIASFLLHALRFSIRS

Query:  ---CGDKEAKPNRDILMV
            G KEA PNRDILMV
Subjt:  ---CGDKEAKPNRDILMV

A0A1S3BXG6 uncharacterized protein LOC1034946508.7e-5189.34Show/hide
Query:  QKIRARMADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIASFLLHAL
        +KI A M +DDDPWLAPDKLYHFLLCF+LTILFAS ALHTRYPFIRRHSILIGSV+SL AGAAKEVADELGFFKSAGASTRDAVADLIGVL+ASFLLHAL
Subjt:  QKIRARMADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIASFLLHAL

Query:  RFSIRSC-GDKEAKPNRDILMV
        RFSIRS  GDKEA PNRDILMV
Subjt:  RFSIRSC-GDKEAKPNRDILMV

A0A5A7TRK6 Putative transmembrane protein1.3e-4991.38Show/hide
Query:  MADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIASFLLHALRFSIRS
        M +DDDPWLAPDKLYHFLLCF+LTILFAS ALHTRYPFIRRHSILIGSV+SL AGAAKEVADELGFFKSAGASTRDAVADLIGVL+ASFLLHALRFSIRS
Subjt:  MADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIASFLLHALRFSIRS

Query:  C-GDKEAKPNRDILMV
          GDKEA PNRDILMV
Subjt:  C-GDKEAKPNRDILMV

A0A6J1G9C8 uncharacterized protein LOC1114521361.2e-4786.09Show/hide
Query:  MADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIASFLLHALRFSIRS
        M DD+DPW APDKLYHFLLCFTLT+ FA+LA  TRYPFIRRHSI+IGSV+SLFAGAAKEVADELGFFKSAGASTRDAVADL+GVLIASF LHALRFSIR 
Subjt:  MADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIASFLLHALRFSIRS

Query:  CGDKEAKPNRDILMV
         G KEA PNRDILMV
Subjt:  CGDKEAKPNRDILMV

A0A6J1K872 uncharacterized protein LOC1114925821.7e-4685.22Show/hide
Query:  MADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIASFLLHALRFSIRS
        M DD+DPW APDKLYHFLLCFTLT+ FA+LA  TR+PFIRRHSI+IGSV+SLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIASF LHALRF IR 
Subjt:  MADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIASFLLHALRFSIRS

Query:  CGDKEAKPNRDILMV
         G KEA PNRDILMV
Subjt:  CGDKEAKPNRDILMV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G15900.1 unknown protein1.5e-2662.92Show/hide
Query:  DDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIASFLL
        D +DPWLA DKLYH + CF+++++F++LA  +RY F+RRHSI IGS  SL AGAAKE AD++G F SAGAS RDAVAD IGV+IA+ +L
Subjt:  DDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIASFLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGTTGTAAAGTCTCAAACTGTCAAACAAAACAGCAAATCGTTGGACCAAAAAATCAGAGCGCGAATGGCGGACGACGACGATCCATGGTTAGCTCCCGACAAGCT
CTACCATTTTCTTCTCTGTTTCACTCTCACTATCCTCTTCGCTTCATTGGCCCTTCACACGCGTTATCCATTCATCCGTCGCCACTCCATTCTGATCGGATCCGTCGTTT
CTCTTTTCGCCGGAGCCGCTAAAGAGGTCGCCGACGAACTCGGCTTCTTCAAGTCCGCCGGAGCTTCTACCAGGGATGCTGTCGCCGATCTGATCGGCGTCTTGATCGCT
TCTTTCCTTCTTCACGCCCTCAGATTCTCGATCCGCAGCTGCGGCGACAAAGAAGCTAAACCTAATCGGGACATTTTAATGGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGTTGTAAAGTCTCAAACTGTCAAACAAAACAGCAAATCGTTGGACCAAAAAATCAGAGCGCGAATGGCGGACGACGACGATCCATGGTTAGCTCCCGACAAGCT
CTACCATTTTCTTCTCTGTTTCACTCTCACTATCCTCTTCGCTTCATTGGCCCTTCACACGCGTTATCCATTCATCCGTCGCCACTCCATTCTGATCGGATCCGTCGTTT
CTCTTTTCGCCGGAGCCGCTAAAGAGGTCGCCGACGAACTCGGCTTCTTCAAGTCCGCCGGAGCTTCTACCAGGGATGCTGTCGCCGATCTGATCGGCGTCTTGATCGCT
TCTTTCCTTCTTCACGCCCTCAGATTCTCGATCCGCAGCTGCGGCGACAAAGAAGCTAAACCTAATCGGGACATTTTAATGGTCTGA
Protein sequenceShow/hide protein sequence
MNVVKSQTVKQNSKSLDQKIRARMADDDDPWLAPDKLYHFLLCFTLTILFASLALHTRYPFIRRHSILIGSVVSLFAGAAKEVADELGFFKSAGASTRDAVADLIGVLIA
SFLLHALRFSIRSCGDKEAKPNRDILMV