; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi07G004170 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G004170
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSignal recognition particle 54 kDa protein
Genome locationchr07:4461463..4461932
RNA-Seq ExpressionLsi07G004170
SyntenyLsi07G004170
Gene Ontology termsGO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation (biological process)
GO:0005786 - signal recognition particle, endoplasmic reticulum targeting (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0003924 - GTPase activity (molecular function)
GO:0005525 - GTP binding (molecular function)
GO:0008312 - 7S RNA binding (molecular function)
GO:0030942 - endoplasmic reticulum signal peptide binding (molecular function)
InterPro domainsIPR004125 - Signal recognition particle, SRP54 subunit, M-domain
IPR022941 - Signal recognition particle, SRP54 subunit
IPR036891 - Signal recognition particle, SRP54 subunit, M-domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581959.1 hypothetical protein SDJN03_21961, partial [Cucurbita argyrosperma subsp. sororia]1.1e-43100Show/hide
Query:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
        MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
Subjt:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG

KAG7018379.1 hypothetical protein SDJN02_20247 [Cucurbita argyrosperma subsp. argyrosperma]1.1e-43100Show/hide
Query:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
        MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
Subjt:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG

XP_022955506.1 signal recognition particle 54 kDa protein 2 [Cucurbita moschata]1.1e-43100Show/hide
Query:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
        MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
Subjt:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG

XP_023528994.1 signal recognition particle 54 kDa protein 2-like [Cucurbita pepo subsp. pepo]1.1e-43100Show/hide
Query:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
        MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
Subjt:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG

XP_038876730.1 signal recognition particle 54 kDa protein 2 [Benincasa hispida]1.1e-43100Show/hide
Query:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
        MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
Subjt:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG

TrEMBL top hitse value%identityAlignment
A0A5A7TRJ6 Signal recognition particle 54 kDa protein1.6e-4398.97Show/hide
Query:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
        +NESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
Subjt:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG

A0A5D3E0K2 Signal recognition particle 54 kDa protein 21.6e-4398.97Show/hide
Query:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
        +NESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
Subjt:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG

A0A6J1G940 Signal recognition particle 54 kDa protein9.1e-4497.94Show/hide
Query:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
        MNESRMMR+ARGSGRR+QEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
Subjt:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG

A0A6J1GTY4 Signal recognition particle 54 kDa protein5.3e-44100Show/hide
Query:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
        MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
Subjt:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG

A0A6J1KE35 Signal recognition particle 54 kDa protein7.0e-4498.97Show/hide
Query:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
        MNESRMMRIARGSGRR+QEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
Subjt:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG

SwissProt top hitse value%identityAlignment
P49966 Signal recognition particle 54 kDa protein 25.3e-3375.26Show/hide
Query:  NESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGGK
        NESR+MRIARGSGR V+EVMEM+EEYKRL  +W K+KGLK  +KG MSALS+N N+Q +SKVLP Q+LKQIGGM GLQSLMKQMGS KD+MGMFGG+
Subjt:  NESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGGK

P49967 Signal recognition particle 54 kDa protein 39.7e-4391.67Show/hide
Query:  NESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
        NESRMMRIARGSGR+V+EVMEM+EEYKRLAK+WSKMKGLKIPK G+MSALSRNMNAQHMSKVLPPQ+LKQIGGMGGLQSLMKQMGS KDMMGMFGG
Subjt:  NESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG

P49968 Signal recognition particle 54 kDa protein 16.5e-3170.1Show/hide
Query:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
        M ESR++RIARGSGR++++V +M+EEYKRLAK+WSKMKGLK+PK G+MS LS+N+N Q M+K LPPQ+LKQ+GGMGGLQ+LMKQMG  KDM  M GG
Subjt:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG

P49971 Signal recognition particle 54 kDa protein 16.5e-3985.57Show/hide
Query:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
        + ESR+MRIARGSGR V EVMEM+EEYKRLAK++SKMKGLKIPKKG+MS+LSRNMNAQ+MSKVLPPQ+LKQIGGMGGLQ+LMKQMGS KDMMGMFGG
Subjt:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG

P49972 Signal recognition particle 54 kDa protein 22.6e-4087.63Show/hide
Query:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
        M +SR+MRIARGSGR+V EVM+MMEEYKRLAK+WSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQ+LKQIGGMGGLQ+LMKQMGS KDMMG  GG
Subjt:  MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG

Arabidopsis top hitse value%identityAlignment
AT1G15310.1 signal recognition particle 54 kDa subunit2.6e-2769.79Show/hide
Query:  NESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
        NESR+MRIARGSGR V+EVMEM+EEYKR+AK    MKG+KIPK G+            MSKV+PPQ+LKQ+GGM GLQSLMKQMGS KDMMGMFGG
Subjt:  NESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG

AT1G48900.1 Signal recognition particle, SRP54 subunit protein6.9e-4491.67Show/hide
Query:  NESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG
        NESRMMRIARGSGR+V+EVMEM+EEYKRLAK+WSKMKGLKIPK G+MSALSRNMNAQHMSKVLPPQ+LKQIGGMGGLQSLMKQMGS KDMMGMFGG
Subjt:  NESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGG

AT5G49500.1 Signal recognition particle, SRP54 subunit protein3.8e-3475.26Show/hide
Query:  NESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGGK
        NESR+MRIARGSGR V+EVMEM+EEYKRL  +W K+KGLK  +KG MSALS+N N+Q +SKVLP Q+LKQIGGM GLQSLMKQMGS KD+MGMFGG+
Subjt:  NESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACGAGTCGCGAATGATGCGAATAGCAAGAGGTTCAGGTCGCCGTGTTCAGGAAGTAATGGAAATGATGGAAGAGTACAAGCGTCTCGCTAAGGTATGGAGCAAGAT
GAAAGGGCTGAAGATCCCAAAGAAGGGTGAAATGAGCGCGCTATCTCGAAATATGAACGCACAGCACATGAGTAAGGTCCTTCCTCCCCAGATTTTGAAGCAAATTGGCG
GGATGGGTGGCCTACAGAGCTTGATGAAGCAAATGGGTTCAAATAAAGATATGATGGGAATGTTTGGAGGGAAGAGGACTGATGACGTCGACGATTTCACTGGATTGATT
AAGCCATCGGACGAATATGTATATTTATTTGTTCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAACGAGTCGCGAATGATGCGAATAGCAAGAGGTTCAGGTCGCCGTGTTCAGGAAGTAATGGAAATGATGGAAGAGTACAAGCGTCTCGCTAAGGTATGGAGCAAGAT
GAAAGGGCTGAAGATCCCAAAGAAGGGTGAAATGAGCGCGCTATCTCGAAATATGAACGCACAGCACATGAGTAAGGTCCTTCCTCCCCAGATTTTGAAGCAAATTGGCG
GGATGGGTGGCCTACAGAGCTTGATGAAGCAAATGGGTTCAAATAAAGATATGATGGGAATGTTTGGAGGGAAGAGGACTGATGACGTCGACGATTTCACTGGATTGATT
AAGCCATCGGACGAATATGTATATTTATTTGTTCTCTAG
Protein sequenceShow/hide protein sequence
MNESRMMRIARGSGRRVQEVMEMMEEYKRLAKVWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQILKQIGGMGGLQSLMKQMGSNKDMMGMFGGKRTDDVDDFTGLI
KPSDEYVYLFVL