; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi07G004350 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G004350
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptiondTMP kinase
Genome locationchr07:4641477..4642578
RNA-Seq ExpressionLsi07G004350
SyntenyLsi07G004350
Gene Ontology termsGO:0006233 - dTDP biosynthetic process (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0046940 - nucleoside monophosphate phosphorylation (biological process)
GO:0004798 - thymidylate kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044460.1 thymidylate kinase isoform X2 [Cucumis melo var. makuwa]1.4e-4075Show/hide
Query:  GSGTNGSLKPVSGAGGADTKGNGSSAVSGTSGTRGGGRKVLGGCGIVKGGGSAGIDTSGTGGGSENSGRGGEKVIKGVGVDNSGGGGNQVEGVGVDNSGG
        GSGTNGSLKP+SGAGGADTKGNGS  +SGTSGTRGGGRKVLGGCG VKGGG      S TGGGS+N G GGE V K               GVGVDNSGG
Subjt:  GSGTNGSLKPVSGAGGADTKGNGSSAVSGTSGTRGGGRKVLGGCGIVKGGGSAGIDTSGTGGGSENSGRGGEKVIKGVGVDNSGGGGNQVEGVGVDNSGG

Query:  GEETRGGGNQVEGVGVDDN-GGGEGTKGGGTISEGVGVDCSGGGGEGTKGVGGDEGGGDG
        GEETRGGGNQVEGVGV+DN GGGEGTKGGGT+SEGVGVDC+GGGGEGT+GVG   GGGDG
Subjt:  GEETRGGGNQVEGVGVDDN-GGGEGTKGGGTISEGVGVDCSGGGGEGTKGVGGDEGGGDG

KZN09411.1 hypothetical protein DCAR_002067 [Daucus carota subsp. sativus]9.4e-0543.59Show/hide
Query:  GGSGTNGSLKPVSGAGGADTKGNGSSAVSGTSGTRGGGRKVLGGCGIVKGGG-----SAGIDTSGTGGGSENSGRGGEKVIKGVGVDNSGGGGNQVEGVG
        GG   NG     SG GG +  G G    SG     GGG  V GG G   GGG       G D +G GGG +  G GG++   G G D++GGGG  V G G
Subjt:  GGSGTNGSLKPVSGAGGADTKGNGSSAVSGTSGTRGGGRKVLGGCGIVKGGG-----SAGIDTSGTGGGSENSGRGGEKVIKGVGVDNSGGGGNQVEGVG

Query:  VDNSGGGEETRGGGNQVEGVGVDDNGGGEGTKGGGTISEGVGVDCSGGGGEGTKGVGGDEGGGD-----GVSGEAKGGGG-DAGRGGGEGTTGAG
          N GGG+ + GGG +  G G + NGGG   +GGG  ++G G DC  GGG    G GGD+ GG      G  GE  GGGG D+G GGGE   G G
Subjt:  VDNSGGGEETRGGGNQVEGVGVDDNGGGEGTKGGGTISEGVGVDCSGGGGEGTKGVGGDEGGGD-----GVSGEAKGGGG-DAGRGGGEGTTGAG

PON80999.1 Leucine-rich repeat, cysteine-containing subtype [Trema orientale]6.1e-0443.27Show/hide
Query:  GGSGTNGSLKPVSGAGGADTKGNGSSAVSGTSGTRGGGRKVLGGCGI-VKGG------GSAGI-DTSGTGG-----GSENSGRGGEKVIKGVGVDNSGGG
        GGS   GSLK +SG GG D  G+GS   +G     GGGRK+LG CG  + GG      GS G+ +  G+GG     G ENSG  G   +   G  +  GG
Subjt:  GGSGTNGSLKPVSGAGGADTKGNGSSAVSGTSGTRGGGRKVLGGCGI-VKGG------GSAGI-DTSGTGG-----GSENSGRGGEKVIKGVGVDNSGGG

Query:  GNQVEGVGVDNSGGGEETRG---GGNQVEGVGVDDN----GGGEGTKGGGTISEGVGVDCSGGGGEGTK--GVGGDEGGGDGVSGEAKGGGGD--AGRGG
        G +  G       GGE T G   GG++  G  V D+    GGG    GGG  + G G +  GGGG+GT   G GG+ GGG+G++G    GGGD    RGG
Subjt:  GNQVEGVGVDNSGGGEETRG---GGNQVEGVGVDDN----GGGEGTKGGGTISEGVGVDCSGGGGEGTK--GVGGDEGGGDGVSGEAKGGGGD--AGRGG

Query:  GEGTTGAG
        GEGTTG G
Subjt:  GEGTTGAG

XP_024966093.1 glycine-rich cell wall structural protein-like [Cynara cardunculus var. scolymus]4.2e-0546.2Show/hide
Query:  GGSGTNGSLKPVSGAGGADTKGNGSSAVSGTSGTRGGGRKVLGGCGIVKGGGSAGIDTSGTGGGSENSGRGGEKVIKGVGVDNSGGGGNQVEGVGVDNSG
        GG G  GS     G+GG   KG G S  SG+ G  GGG    GG G    GGS G   SG GGGS  SG GG    KG G   SGGGG+  +G G   SG
Subjt:  GGSGTNGSLKPVSGAGGADTKGNGSSAVSGTSGTRGGGRKVLGGCGIVKGGGSAGIDTSGTGGGSENSGRGGEKVIKGVGVDNSGGGGNQVEGVGVDNSG

Query:  GGEETRGGGNQVEGVGVDDNGGGEGTKGGGTISEGVGVDCSGGGGEGTKGVGGDEGGGDGVSGEAKGGGGDAGRGGGEGTTGAG
        GG   +GGG+   G G    GGG G  GG +   G G   SGGGG+G  G GG  GGG G  G    GGG +G  GG G +G G
Subjt:  GGEETRGGGNQVEGVGVDDNGGGEGTKGGGTISEGVGVDCSGGGGEGTKGVGGDEGGGDGVSGEAKGGGGDAGRGGGEGTTGAG

XP_038890617.1 glycine-rich cell wall structural protein 1.0 [Benincasa hispida]1.0e-2774.07Show/hide
Query:  GGGSAGIDTSGTGGGSENSGRGGEKVIKGVGVDNSGGGGNQVEGVGVDNSGGGEETRGGGNQVEGVGVDDNGGGEGTKGGGTISEGVGVDCSGGGGEGTK
        GGG      SGTGGGS+NSGRGGE VIKG                GVD+SGGGEETRGGGNQ+EGVGVDDNGGGEGT GGG ISEGVGVD SGGGGEGTK
Subjt:  GGGSAGIDTSGTGGGSENSGRGGEKVIKGVGVDNSGGGGNQVEGVGVDNSGGGEETRGGGNQVEGVGVDDNGGGEGTKGGGTISEGVGVDCSGGGGEGTK

Query:  GVGGDEGGGDGVSGEAKGGGGDAGRGGGEGTTGAG
        GV     GGDGVSGEAKGGGGDAGRGGGEGT GAG
Subjt:  GVGGDEGGGDGVSGEAKGGGGDAGRGGGEGTTGAG

TrEMBL top hitse value%identityAlignment
A0A124SHU4 Uncharacterized protein2.0e-0546.2Show/hide
Query:  GGSGTNGSLKPVSGAGGADTKGNGSSAVSGTSGTRGGGRKVLGGCGIVKGGGSAGIDTSGTGGGSENSGRGGEKVIKGVGVDNSGGGGNQVEGVGVDNSG
        GG G  GS     G+GG   KG G S  SG+ G  GGG    GG G    GGS G   SG GGGS  SG GG    KG G   SGGGG+  +G G   SG
Subjt:  GGSGTNGSLKPVSGAGGADTKGNGSSAVSGTSGTRGGGRKVLGGCGIVKGGGSAGIDTSGTGGGSENSGRGGEKVIKGVGVDNSGGGGNQVEGVGVDNSG

Query:  GGEETRGGGNQVEGVGVDDNGGGEGTKGGGTISEGVGVDCSGGGGEGTKGVGGDEGGGDGVSGEAKGGGGDAGRGGGEGTTGAG
        GG   +GGG+   G G    GGG G  GG +   G G   SGGGG+G  G GG  GGG G  G    GGG +G  GG G +G G
Subjt:  GGEETRGGGNQVEGVGVDDNGGGEGTKGGGTISEGVGVDCSGGGGEGTKGVGGDEGGGDGVSGEAKGGGGDAGRGGGEGTTGAG

A0A166GVX7 FAD-binding PCMH-type domain-containing protein4.6e-0543.59Show/hide
Query:  GGSGTNGSLKPVSGAGGADTKGNGSSAVSGTSGTRGGGRKVLGGCGIVKGGG-----SAGIDTSGTGGGSENSGRGGEKVIKGVGVDNSGGGGNQVEGVG
        GG   NG     SG GG +  G G    SG     GGG  V GG G   GGG       G D +G GGG +  G GG++   G G D++GGGG  V G G
Subjt:  GGSGTNGSLKPVSGAGGADTKGNGSSAVSGTSGTRGGGRKVLGGCGIVKGGG-----SAGIDTSGTGGGSENSGRGGEKVIKGVGVDNSGGGGNQVEGVG

Query:  VDNSGGGEETRGGGNQVEGVGVDDNGGGEGTKGGGTISEGVGVDCSGGGGEGTKGVGGDEGGGD-----GVSGEAKGGGG-DAGRGGGEGTTGAG
          N GGG+ + GGG +  G G + NGGG   +GGG  ++G G DC  GGG    G GGD+ GG      G  GE  GGGG D+G GGGE   G G
Subjt:  VDNSGGGEETRGGGNQVEGVGVDDNGGGEGTKGGGTISEGVGVDCSGGGGEGTKGVGGDEGGGD-----GVSGEAKGGGG-DAGRGGGEGTTGAG

A0A2P5E624 Leucine-rich repeat, cysteine-containing subtype3.0e-0443.27Show/hide
Query:  GGSGTNGSLKPVSGAGGADTKGNGSSAVSGTSGTRGGGRKVLGGCGI-VKGG------GSAGI-DTSGTGG-----GSENSGRGGEKVIKGVGVDNSGGG
        GGS   GSLK +SG GG D  G+GS   +G     GGGRK+LG CG  + GG      GS G+ +  G+GG     G ENSG  G   +   G  +  GG
Subjt:  GGSGTNGSLKPVSGAGGADTKGNGSSAVSGTSGTRGGGRKVLGGCGI-VKGG------GSAGI-DTSGTGG-----GSENSGRGGEKVIKGVGVDNSGGG

Query:  GNQVEGVGVDNSGGGEETRG---GGNQVEGVGVDDN----GGGEGTKGGGTISEGVGVDCSGGGGEGTK--GVGGDEGGGDGVSGEAKGGGGD--AGRGG
        G +  G       GGE T G   GG++  G  V D+    GGG    GGG  + G G +  GGGG+GT   G GG+ GGG+G++G    GGGD    RGG
Subjt:  GNQVEGVGVDNSGGGEETRG---GGNQVEGVGVDDN----GGGEGTKGGGTISEGVGVDCSGGGGEGTK--GVGGDEGGGDGVSGEAKGGGGD--AGRGG

Query:  GEGTTGAG
        GEGTTG G
Subjt:  GEGTTGAG

A0A5D2DVX2 Uncharacterized protein3.9e-0445.93Show/hide
Query:  GGADTKGNGSSAVSGTSGTRGGGRKVLGGCGIVKGGGSAGIDTSGTGGGSENSGRGGEKVIKGVGVDNSGGGGNQVEGVGVDNSGGGEETRGGGNQVEGV
        GG +  G G     G     GGG +  GG G   GGG       GTGGG E +G GG+    G G + +GGG +   G G    GGGE T GGG+ + G 
Subjt:  GGADTKGNGSSAVSGTSGTRGGGRKVLGGCGIVKGGGSAGIDTSGTGGGSENSGRGGEKVIKGVGVDNSGGGGNQVEGVGVDNSGGGEETRGGGNQVEGV

Query:  GVDDNGGGEGTKGGGTISEGVGVDCSGGGGEGTKGVG---GDEGGGDGVSGEAKGGGGDAGRGGGEGTTGAG
        G    GGGEGT GGG  + G G    GGGGEGT G G   G  G G G  GE  GGGGD   GGGEGT G G
Subjt:  GVDDNGGGEGTKGGGTISEGVGVDCSGGGGEGTKGVG---GDEGGGDGVSGEAKGGGGDAGRGGGEGTTGAG

A0A5D3E0G4 dTMP kinase6.7e-4175Show/hide
Query:  GSGTNGSLKPVSGAGGADTKGNGSSAVSGTSGTRGGGRKVLGGCGIVKGGGSAGIDTSGTGGGSENSGRGGEKVIKGVGVDNSGGGGNQVEGVGVDNSGG
        GSGTNGSLKP+SGAGGADTKGNGS  +SGTSGTRGGGRKVLGGCG VKGGG      S TGGGS+N G GGE V K               GVGVDNSGG
Subjt:  GSGTNGSLKPVSGAGGADTKGNGSSAVSGTSGTRGGGRKVLGGCGIVKGGGSAGIDTSGTGGGSENSGRGGEKVIKGVGVDNSGGGGNQVEGVGVDNSGG

Query:  GEETRGGGNQVEGVGVDDN-GGGEGTKGGGTISEGVGVDCSGGGGEGTKGVGGDEGGGDG
        GEETRGGGNQVEGVGV+DN GGGEGTKGGGT+SEGVGVDC+GGGGEGT+GVG   GGGDG
Subjt:  GEETRGGGNQVEGVGVDDN-GGGEGTKGGGTISEGVGVDCSGGGGEGTKGVGGDEGGGDG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTATGTTTCTTTGAACATTTATATAGGTGGCAGTGGCACCAATGGCTCACTAAAACCAGTATCTGGTGCTGGCGGTGCAGACACAAAGGGCAATGGTTCCTCTGC
AGTATCTGGAACTTCAGGAACCAGGGGAGGCGGGAGAAAGGTTCTGGGAGGCTGTGGAATTGTGAAAGGCGGCGGTTCAGCTGGGATTGATACCAGTGGCACTGGTGGAG
GTAGTGAAAATTCTGGCAGAGGTGGTGAGAAGGTTATTAAAGGTGTTGGAGTAGATAATAGTGGTGGTGGTGGAAACCAGGTTGAAGGTGTTGGAGTAGATAATAGTGGT
GGTGGTGAAGAAACTAGAGGTGGTGGAAACCAGGTTGAAGGTGTTGGAGTAGATGATAATGGTGGTGGTGAAGGCACCAAAGGTGGTGGAACCATTTCTGAAGGAGTTGG
AGTAGATTGCAGCGGTGGTGGCGGTGAAGGAACCAAGGGTGTTGGGGGAGATGAAGGAGGTGGAGATGGAGTTTCAGGTGAAGCCAAGGGCGGTGGCGGTGATGCAGGAA
GAGGAGGTGGAGAAGGAACTACGGGAGCTGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTTATGTTTCTTTGAACATTTATATAGGTGGCAGTGGCACCAATGGCTCACTAAAACCAGTATCTGGTGCTGGCGGTGCAGACACAAAGGGCAATGGTTCCTCTGC
AGTATCTGGAACTTCAGGAACCAGGGGAGGCGGGAGAAAGGTTCTGGGAGGCTGTGGAATTGTGAAAGGCGGCGGTTCAGCTGGGATTGATACCAGTGGCACTGGTGGAG
GTAGTGAAAATTCTGGCAGAGGTGGTGAGAAGGTTATTAAAGGTGTTGGAGTAGATAATAGTGGTGGTGGTGGAAACCAGGTTGAAGGTGTTGGAGTAGATAATAGTGGT
GGTGGTGAAGAAACTAGAGGTGGTGGAAACCAGGTTGAAGGTGTTGGAGTAGATGATAATGGTGGTGGTGAAGGCACCAAAGGTGGTGGAACCATTTCTGAAGGAGTTGG
AGTAGATTGCAGCGGTGGTGGCGGTGAAGGAACCAAGGGTGTTGGGGGAGATGAAGGAGGTGGAGATGGAGTTTCAGGTGAAGCCAAGGGCGGTGGCGGTGATGCAGGAA
GAGGAGGTGGAGAAGGAACTACGGGAGCTGGCTGA
Protein sequenceShow/hide protein sequence
MFYVSLNIYIGGSGTNGSLKPVSGAGGADTKGNGSSAVSGTSGTRGGGRKVLGGCGIVKGGGSAGIDTSGTGGGSENSGRGGEKVIKGVGVDNSGGGGNQVEGVGVDNSG
GGEETRGGGNQVEGVGVDDNGGGEGTKGGGTISEGVGVDCSGGGGEGTKGVGGDEGGGDGVSGEAKGGGGDAGRGGGEGTTGAG