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Lsi07G004630 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G004630
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAt1g52565
Genome locationchr07:4916121..4917251
RNA-Seq ExpressionLsi07G004630
SyntenyLsi07G004630
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008454240.1 PREDICTED: uncharacterized protein LOC103494703 [Cucumis melo]3.1e-4484.44Show/hide
Query:  MSSILSSQGLVIATAMVVSSTALFLAFSNHH--KINPII-PSISLLPSCFSSDEKKNEKKKQRKKKKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTR
        MSSILSSQGLVIATAMVVSSTALFLAFSNHH   I+PII PS SLLPSCFSSD    EKKKQ+KKKKVRFAEDVKEPKGNGEEYRREHDEK+G+ E  TR
Subjt:  MSSILSSQGLVIATAMVVSSTALFLAFSNHH--KINPII-PSISLLPSCFSSDEKKNEKKKQRKKKKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTR

Query:  TRTRRSSCRNEIPANRVALYNGILKDRSQRIQCSF
         R RR SCRN+IPANR+ALYNGILKDRSQRIQCSF
Subjt:  TRTRRSSCRNEIPANRVALYNGILKDRSQRIQCSF
XP_011652971.1 uncharacterized protein LOC101211217 [Cucumis sativus]9.2e-4479.1Show/hide
Query:  MSSILSSQGLVIATAMVVSSTALFLAFSNHH--KINPIIPSISLLPSCFSSDEKKNEKKKQRKKKKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTRT
        MSSILSSQ LV+ATAMVVSSTALFLAFSNHH   INP IP  + LP CFSSDEKK ++ K++KKKKVRFAEDVKEPKGNGEEYRREHDEKMG+ E  TR 
Subjt:  MSSILSSQGLVIATAMVVSSTALFLAFSNHH--KINPIIPSISLLPSCFSSDEKKNEKKKQRKKKKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTRT

Query:  RTRRSSCRNEIPANRVALYNGILKDRSQRIQCSF
        R RR SCRN++P NR+ALYNGILKDRSQRIQCSF
Subjt:  RTRRSSCRNEIPANRVALYNGILKDRSQRIQCSF
XP_022955913.1 uncharacterized protein LOC111457756 [Cucurbita moschata]9.2e-4481.82Show/hide
Query:  MSSILSSQGLVIATAMVVSSTALFLAFSNHHKINPIIPSISLLPSCFSSDEKKNEKKKQRKKKKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTRTRT
        MSSIL+SQGLVIATAMVVSSTALFLAFS HHKINP +PS SLL SCFSSDE KN+KKK++KKKKVRFAEDVKEPKGNGEEYRREHDE++ M ERRT +  
Subjt:  MSSILSSQGLVIATAMVVSSTALFLAFSNHHKINPIIPSISLLPSCFSSDEKKNEKKKQRKKKKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTRTRT

Query:  RRSSCRNEIPANRVALYNGILKDRSQRIQCSF
          S CRNEIPANRVALYNGILK RS R QCSF
Subjt:  RRSSCRNEIPANRVALYNGILKDRSQRIQCSF
XP_023528178.1 uncharacterized protein LOC111791169 [Cucurbita pepo subsp. pepo]7.5e-4683.33Show/hide
Query:  MSSILSSQGLVIATAMVVSSTALFLAFSNHHKINPIIPSISLLPSCFSSDEKKNEKKKQRKKKKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTRTRT
        MSSIL+SQGLVIATAMVVSSTALFLAFSNHHKINP +PS SLL SCFSSD+K   KKK++KKKKVRFAEDVKEPKGNGEEYRREHDE++ M ERR RTRT
Subjt:  MSSILSSQGLVIATAMVVSSTALFLAFSNHHKINPIIPSISLLPSCFSSDEKKNEKKKQRKKKKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTRTRT

Query:  RRSSCRNEIPANRVALYNGILKDRSQRIQCSF
          S CRNEIPANRVALYNGILK RS R QCSF
Subjt:  RRSSCRNEIPANRVALYNGILKDRSQRIQCSF
XP_038901306.1 uncharacterized protein LOC120088227 [Benincasa hispida]2.0e-5493.98Show/hide
Query:  MSSILSSQGLVIATAMVVSSTALFLAFSNHHKINPIIPSISLLPSCFSSDEKKNEKKKQ-RKKKKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTRTR
        MSSILSSQGLVIATAMVVSSTALFLAFSNHHKINPIIPSISLLPSCFSSDEKK EKKKQ RKKKKVRFAEDVKEPKGNGEEYRREHDEKMGM ER+  TR
Subjt:  MSSILSSQGLVIATAMVVSSTALFLAFSNHHKINPIIPSISLLPSCFSSDEKKNEKKKQ-RKKKKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTRTR

Query:  TRRSSCRNEIPANRVALYNGILKDRSQRIQCSF
        TR S+CRNEIPANRVALYNGILKDRSQRIQCSF
Subjt:  TRRSSCRNEIPANRVALYNGILKDRSQRIQCSF
TrEMBL top hitse value%identityAlignment
A0A0A0KVF6 Uncharacterized protein4.4e-4479.1Show/hide
Query:  MSSILSSQGLVIATAMVVSSTALFLAFSNHH--KINPIIPSISLLPSCFSSDEKKNEKKKQRKKKKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTRT
        MSSILSSQ LV+ATAMVVSSTALFLAFSNHH   INP IP  + LP CFSSDEKK ++ K++KKKKVRFAEDVKEPKGNGEEYRREHDEKMG+ E  TR 
Subjt:  MSSILSSQGLVIATAMVVSSTALFLAFSNHH--KINPIIPSISLLPSCFSSDEKKNEKKKQRKKKKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTRT

Query:  RTRRSSCRNEIPANRVALYNGILKDRSQRIQCSF
        R RR SCRN++P NR+ALYNGILKDRSQRIQCSF
Subjt:  RTRRSSCRNEIPANRVALYNGILKDRSQRIQCSF
A0A1S3BY99 uncharacterized protein LOC1034947031.5e-4484.44Show/hide
Query:  MSSILSSQGLVIATAMVVSSTALFLAFSNHH--KINPII-PSISLLPSCFSSDEKKNEKKKQRKKKKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTR
        MSSILSSQGLVIATAMVVSSTALFLAFSNHH   I+PII PS SLLPSCFSSD    EKKKQ+KKKKVRFAEDVKEPKGNGEEYRREHDEK+G+ E  TR
Subjt:  MSSILSSQGLVIATAMVVSSTALFLAFSNHH--KINPII-PSISLLPSCFSSDEKKNEKKKQRKKKKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTR

Query:  TRTRRSSCRNEIPANRVALYNGILKDRSQRIQCSF
         R RR SCRN+IPANR+ALYNGILKDRSQRIQCSF
Subjt:  TRTRRSSCRNEIPANRVALYNGILKDRSQRIQCSF
A0A6J1GAK8 uncharacterized protein LOC111452283 isoform X16.0e-4176.47Show/hide
Query:  MSSILSSQGLVIATAMVVSSTALFLAFSNHHKINPIIPSISLLPSCFSSDEKKNEKKKQRKK---KKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTR
        MSSILSSQGLVIATAMVVSSTALFLAFS HHKI P  PS SLL SC SSD+KK EK K + K   KKVRFAEDVKEP+GNGEEYR+EHDEKM M ERR R
Subjt:  MSSILSSQGLVIATAMVVSSTALFLAFSNHHKINPIIPSISLLPSCFSSDEKKNEKKKQRKK---KKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTR

Query:  -TRTRRSSCRNEIPANRVALYNGILKDRSQRIQCSF
         T T   SC+N+ PAN++ALYNGILK RSQRIQCSF
Subjt:  -TRTRRSSCRNEIPANRVALYNGILKDRSQRIQCSF
A0A6J1GVB7 uncharacterized protein LOC1114577564.4e-4481.82Show/hide
Query:  MSSILSSQGLVIATAMVVSSTALFLAFSNHHKINPIIPSISLLPSCFSSDEKKNEKKKQRKKKKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTRTRT
        MSSIL+SQGLVIATAMVVSSTALFLAFS HHKINP +PS SLL SCFSSDE KN+KKK++KKKKVRFAEDVKEPKGNGEEYRREHDE++ M ERRT +  
Subjt:  MSSILSSQGLVIATAMVVSSTALFLAFSNHHKINPIIPSISLLPSCFSSDEKKNEKKKQRKKKKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTRTRT

Query:  RRSSCRNEIPANRVALYNGILKDRSQRIQCSF
          S CRNEIPANRVALYNGILK RS R QCSF
Subjt:  RRSSCRNEIPANRVALYNGILKDRSQRIQCSF
A0A6J1IWF1 uncharacterized protein LOC1114791844.9e-4380.3Show/hide
Query:  MSSILSSQGLVIATAMVVSSTALFLAFSNHHKINPIIPSISLLPSCFSSDEKKNEKKKQRKKKKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTRTRT
        MSSIL+SQGLVIATAMVVSSTALFLAFS HHKINP +PS +LL SCFSSD++   KKK++KKKKVRFAEDVKEPKGNGEEYRREHDE++GM ERR RT T
Subjt:  MSSILSSQGLVIATAMVVSSTALFLAFSNHHKINPIIPSISLLPSCFSSDEKKNEKKKQRKKKKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTRTRT

Query:  RRSSCRNEIPANRVALYNGILKDRSQRIQCSF
          S CRNEIPANRVALYNG+LK RS R QCSF
Subjt:  RRSSCRNEIPANRVALYNGILKDRSQRIQCSF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52565.1 unknown protein3.5e-2555.64Show/hide
Query:  MSSILS-SQGLVIATAMVVSSTALFLAFSNHHKINPIIPSISLLPSCFSSDEKKNEKKKQRKKKKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTRTR
        M+ ILS S G+VIATAMV SSTALFLA S     N       +L SC SS+EKK  K+++ KKKKV+FAE+VKE KGNGEEYR++   ++ + E+  +  
Subjt:  MSSILS-SQGLVIATAMVVSSTALFLAFSNHHKINPIIPSISLLPSCFSSDEKKNEKKKQRKKKKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTRTR

Query:  TRRSSCRNEIPANRVALYNGILKDRSQRIQCSF
           S CRN++PANR+ALYNGIL+DR  RIQCS+
Subjt:  TRRSSCRNEIPANRVALYNGILKDRSQRIQCSF
AT3G15760.1 unknown protein8.3e-1949.63Show/hide
Query:  SSQGLVIATAMVVSSTALFLA----FSNHHKINPIIPSISLLP---SCFSSDEKKNEKKKQRKKKKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTRT
        S+  +VIATAMV SSTALFLA    F  +H+ NP +   +L P   SC SS+E    KK+ +K KKVRFA++VK+ KGNGEEYRR    +  + +  T+ 
Subjt:  SSQGLVIATAMVVSSTALFLA----FSNHHKINPIIPSISLLP---SCFSSDEKKNEKKKQRKKKKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTRT

Query:  RTRRSSCR-NEIPANRVALYNGILKDRSQRIQCSF
            S CR + +PANR+ALYNGIL+DR  R+Q S+
Subjt:  RTRRSSCR-NEIPANRVALYNGILKDRSQRIQCSF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCCATTTTGAGCTCTCAAGGTCTTGTCATTGCCACTGCCATGGTCGTCTCCTCCACAGCTCTCTTTCTTGCCTTCTCCAACCACCACAAGATCAATCCAATAAT
CCCTTCCATATCCCTCCTTCCTTCTTGCTTTTCTTCAGATGAAAAGAAGAATGAGAAGAAGAAACAGAGGAAGAAGAAGAAGGTGAGATTTGCAGAGGATGTGAAAGAGC
CAAAAGGGAATGGAGAAGAATACAGAAGAGAGCACGATGAGAAAATGGGTATGGGGGAAAGAAGAACAAGAACAAGAACAAGAAGAAGCAGTTGTAGAAATGAAATTCCT
GCAAATCGAGTTGCTCTGTATAATGGAATTCTTAAAGACCGATCGCAAAGAATCCAATGTTCCTTTTGA
mRNA sequenceShow/hide mRNA sequence
AGAGAAAGAGAACAAAACAAATTCACCAAAAAATATCTCTAAAACACACCTCAAGTAAATAGATTCCAAGAAGAAGAGTTTTCACGAATTTCCTCAAGAAAAGTCTCAAC
GAAGCTTAAACAACAAAGGAATACATCATATAGAACAAATAAACAAATCATCTGTGAGAGTCGTCGCAAGATAGCTCCATAAATCCAAAGATTACGTTCTCTATTTTACC
GAGATAATTATTGTTACACTAGAACGAAAAATCTAATTTTATATCCTCGAGAAAGATTCTACAAGAACACCCAGCCCAAAGTTTTGTGTGATTGTCTTAGCTTCATTAAT
TTTGAGTCAATCTCTCTCTCTCTCTAGAGAAGCTTAGAGGGCCACGCATATAAATAAAATCTCCATCTCCTTCTCCCCCACTTGTGCCAACTAAAAACTTTCCTTTCCCA
AATCCCACTTCAAAAAAAAAGAAAAATTCCTGCATCGATTTTTGTTTCTTCGATTCGTCAAAAGAAAAGGCAAATTAAAGAGAATCAACTAAACTTTGGGCTTCCTTCCA
TTTCCATCCGCCATGTCTTCCATTTTGAGCTCTCAAGGTCTTGTCATTGCCACTGCCATGGTCGTCTCCTCCACAGCTCTCTTTCTTGCCTTCTCCAACCACCACAAGAT
CAATCCAATAATCCCTTCCATATCCCTCCTTCCTTCTTGCTTTTCTTCAGATGAAAAGAAGAATGAGAAGAAGAAACAGAGGAAGAAGAAGAAGGTGAGATTTGCAGAGG
ATGTGAAAGAGCCAAAAGGGAATGGAGAAGAATACAGAAGAGAGCACGATGAGAAAATGGGTATGGGGGAAAGAAGAACAAGAACAAGAACAAGAAGAAGCAGTTGTAGA
AATGAAATTCCTGCAAATCGAGTTGCTCTGTATAATGGAATTCTTAAAGACCGATCGCAAAGAATCCAATGTTCCTTTTGATCATAACTCT
Protein sequenceShow/hide protein sequence
MSSILSSQGLVIATAMVVSSTALFLAFSNHHKINPIIPSISLLPSCFSSDEKKNEKKKQRKKKKVRFAEDVKEPKGNGEEYRREHDEKMGMGERRTRTRTRRSSCRNEIP
ANRVALYNGILKDRSQRIQCSF