; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi07G004670 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G004670
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPectin lyase-like superfamily protein
Genome locationchr07:4956695..4957927
RNA-Seq ExpressionLsi07G004670
SyntenyLsi07G004670
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044437.1 putative polygalacturonase [Cucumis melo var. makuwa]1.3e-9673.02Show/hide
Query:  GFVVAIILVIYLMFALGKHHHPKSN---------------NDPIIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLN
        GFVVAII+ I ++FAL KHHHP+SN                DP+  N+K I+VV YGAAGDGKTDDSQAFLKAW AVCEA TPSAMLVPS +TFLLNP+ 
Subjt:  GFVVAIILVIYLMFALGKHHHPKSN---------------NDPIIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLN

Query:  FQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHIN
        FQGPCMSS+V V+ILGKIVAPSDLDAWK FDA+NWLLFSNVS LVIQGNG+IDGQGAAWW+R SD +PT            ALA HDCD LQLSGLTHIN
Subjt:  FQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHIN

Query:  SPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQNCNIATGS
        SPKSHMHIVRCN ASISKLNI+APEDSPNTDGIDV+YST+V+I NCNI TGS
Subjt:  SPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQNCNIATGS

TYK29564.1 putative polygalacturonase [Cucumis melo var. makuwa]3.1e-9873.31Show/hide
Query:  GFVVAIILVIYLMFALGKHHHPKSN---------------NDPIIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLN
        GFVVAII+ I ++FAL KHHHP+SN                DP+  N+K I+VV YGAAGDGKTDDSQAFLKAW AVCEA TPSAMLVPS +TFLLNP+ 
Subjt:  GFVVAIILVIYLMFALGKHHHPKSN---------------NDPIIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLN

Query:  FQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHIN
        FQGPCMSS+VGV+ILGKIVAPSDLDAWK FDA+NWLLFSNVS LVIQGNG+IDGQGAAWW+R SD +PT            ALA HDCD LQLSGLTHIN
Subjt:  FQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHIN

Query:  SPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQNCNIATG
        SPKSHMHIVRCN ASISKLNI+APEDSPNTDGIDV+YST+V+I NCNI TG
Subjt:  SPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQNCNIATG

XP_022956261.1 probable polygalacturonase At3g15720 [Cucurbita moschata]5.5e-9571.72Show/hide
Query:  VGFVVAIILVIYLMFALGK-HHHPKSNNDP------IIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMS
        +GF+V ++LVI L+F L   HHHP+ NNDP        + YK IDVVHYGAAGDGKTDDSQAFLKAWMAVC+AATPSAMLVPS +TFLLNP+ F+GPCMS
Subjt:  VGFVVAIILVIYLMFALGK-HHHPKSNNDP------IIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMS

Query:  SSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMH
        S+VGVKILGK+V PSD+D WK+F  +NWL F+NVSGL I GNGQIDGQGA WW+RKS+ RPT            ALA +DC++L+LSGLTHINSPKSHMH
Subjt:  SSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMH

Query:  IVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQNCNIATG
        IVRCNHASIS+LNILAPEDSPNTDGIDV+YST+V+IQNC+IATG
Subjt:  IVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQNCNIATG

XP_023526898.1 probable polygalacturonase At3g15720 [Cucurbita pepo subsp. pepo]4.2e-9571.72Show/hide
Query:  VGFVVAIILVIYLMFALGK-HHHPKSNNDP------IIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMS
        +GF+V ++LVI L+F L   HHHP+ NNDP        + YK IDVVHYGAAGDGKTDDSQAFLKAWMAVC+A TPSAMLVPS +TFLLNP+ F+GPCMS
Subjt:  VGFVVAIILVIYLMFALGK-HHHPKSNNDP------IIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMS

Query:  SSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMH
        S+VGVKILGK+VAP+D+D WK+F  +NWL F+NVSGL I GNGQIDGQGA WW++KS+ RPT            ALA +DCD+L+LSGLTHINSPKSHMH
Subjt:  SSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMH

Query:  IVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQNCNIATG
        IVRCNHASIS+LNILAPEDSPNTDGIDV+YSTDV+IQNC+IATG
Subjt:  IVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQNCNIATG

XP_038882288.1 probable polygalacturonase At3g15720 [Benincasa hispida]1.3e-9984.51Show/hide
Query:  INYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLV
        +NYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPS R FLLNP+ FQGPCMSSSVGVKILG+IVA SDLDAWKDFDAENWLLF+NVSGLV
Subjt:  INYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLV

Query:  IQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQN
        +QGNG+IDGQGAAWWDR+SD RPT            ALAFHDCD L LSGLTHINSPKSHMHIVRCNHASISKLNI+APEDSPNTDGIDVSYSTDV+I N
Subjt:  IQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQN

Query:  CNIATGSTIPVEY
        CNI TG  +PVEY
Subjt:  CNIATGSTIPVEY

TrEMBL top hitse value%identityAlignment
A0A0A0KTD6 Uncharacterized protein3.4e-9874.69Show/hide
Query:  GFVVAIILVIYLMFALGKHHHPKS-----NNDPIIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMSSSV
        GFVVAI++ I ++FAL KHHHP+S     NNDP+I N+K IDV+ YGAAGDGKTDDS+AFLKAW AVCEA TPSAMLVPS +TFLLNP+ FQGPCMSSSV
Subjt:  GFVVAIILVIYLMFALGKHHHPKS-----NNDPIIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMSSSV

Query:  GVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMHIVR
        GV+ILGKIVAPSDLDAWK FDA+NWLLFSNVS LVIQGNG+IDGQGAAWWDR SD +PT            ALA +DCD L LSGLTH NSP+SHMHIVR
Subjt:  GVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMHIVR

Query:  CNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQNCNIATG
        CNHASISKLNI+APE+SPNTDGIDV++S+ V+I NCNI TG
Subjt:  CNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQNCNIATG

A0A5A7TRF1 Putative polygalacturonase6.4e-9773.02Show/hide
Query:  GFVVAIILVIYLMFALGKHHHPKSN---------------NDPIIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLN
        GFVVAII+ I ++FAL KHHHP+SN                DP+  N+K I+VV YGAAGDGKTDDSQAFLKAW AVCEA TPSAMLVPS +TFLLNP+ 
Subjt:  GFVVAIILVIYLMFALGKHHHPKSN---------------NDPIIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLN

Query:  FQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHIN
        FQGPCMSS+V V+ILGKIVAPSDLDAWK FDA+NWLLFSNVS LVIQGNG+IDGQGAAWW+R SD +PT            ALA HDCD LQLSGLTHIN
Subjt:  FQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHIN

Query:  SPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQNCNIATGS
        SPKSHMHIVRCN ASISKLNI+APEDSPNTDGIDV+YST+V+I NCNI TGS
Subjt:  SPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQNCNIATGS

A0A5D3E161 Putative polygalacturonase1.5e-9873.31Show/hide
Query:  GFVVAIILVIYLMFALGKHHHPKSN---------------NDPIIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLN
        GFVVAII+ I ++FAL KHHHP+SN                DP+  N+K I+VV YGAAGDGKTDDSQAFLKAW AVCEA TPSAMLVPS +TFLLNP+ 
Subjt:  GFVVAIILVIYLMFALGKHHHPKSN---------------NDPIIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLN

Query:  FQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHIN
        FQGPCMSS+VGV+ILGKIVAPSDLDAWK FDA+NWLLFSNVS LVIQGNG+IDGQGAAWW+R SD +PT            ALA HDCD LQLSGLTHIN
Subjt:  FQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHIN

Query:  SPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQNCNIATG
        SPKSHMHIVRCN ASISKLNI+APEDSPNTDGIDV+YST+V+I NCNI TG
Subjt:  SPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQNCNIATG

A0A6J1GW27 probable polygalacturonase At3g157202.7e-9571.72Show/hide
Query:  VGFVVAIILVIYLMFALGK-HHHPKSNNDP------IIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMS
        +GF+V ++LVI L+F L   HHHP+ NNDP        + YK IDVVHYGAAGDGKTDDSQAFLKAWMAVC+AATPSAMLVPS +TFLLNP+ F+GPCMS
Subjt:  VGFVVAIILVIYLMFALGK-HHHPKSNNDP------IIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMS

Query:  SSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMH
        S+VGVKILGK+V PSD+D WK+F  +NWL F+NVSGL I GNGQIDGQGA WW+RKS+ RPT            ALA +DC++L+LSGLTHINSPKSHMH
Subjt:  SSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMH

Query:  IVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQNCNIATG
        IVRCNHASIS+LNILAPEDSPNTDGIDV+YST+V+IQNC+IATG
Subjt:  IVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQNCNIATG

A0A6J1ITL3 LOW QUALITY PROTEIN: probable polygalacturonase At3g157204.7e-9270.45Show/hide
Query:  FVVAIILVIYLMFALGK-HHHPKSNNDP-----------IIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGP
        F+V ++LVI L+F L   HHHP+ N+DP             + YK IDVVHYGAAGDGKTDDS+AFLKAWMA C+AATPSAMLVPS +TFLLNP+ F+GP
Subjt:  FVVAIILVIYLMFALGK-HHHPKSNNDP-----------IIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGP

Query:  CMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKS
        CMSS+VGVKILGK+VAPSD+D WK+F  +NWL F+NVSGL IQG+GQIDGQGA WW RKS+ RPT            ALA +DCD L+LSGLTHINSPKS
Subjt:  CMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKS

Query:  HMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQNCNIATG
        HMHIVRCNHASIS+LNILAPEDSPNTDGIDV+YSTDV+IQNC+IATG
Subjt:  HMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQNCNIATG

SwissProt top hitse value%identityAlignment
P05117 Polygalacturonase-21.2e-3135.68Show/hide
Query:  YLMFALGKHHHPKSNNDPIIIN-YKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMSSSVGVKILGKIVAPSDL
        YL + L K+    +N D +  N  K+I+V+ +GA GDGKT D+ AF +AW   C + TP   +VP  + +LL  + F GPC  SS+ VKI G + A S +
Subjt:  YLMFALGKHHHPKSNNDPIIIN-YKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMSSSVGVKILGKIVAPSDL

Query:  DAWKDFDAENWLLFSNVSGLVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMHIVRCNHASISKLNILAP
          +K  D   W+ F +V  LV+ G G I+G G  WW        ++          +AL F +C +L+++ L   N+ + H+    C +   S L I A 
Subjt:  DAWKDFDAENWLLFSNVSGLVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMHIVRCNHASISKLNILAP

Query:  EDSPNTDGIDVSYSTDVQIQNCNIATG
          SPNTDG+ VS +  +QI +  I TG
Subjt:  EDSPNTDGIDVSYSTDVQIQNCNIATG

P48978 Polygalacturonase5.0e-3035.96Show/hide
Query:  KIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLVIQG
        K I V  +GA G+G  DD+QAF+KAW A C ++    ++VP  + +L+ P+ F GPC  S + ++I G I A  D   +KD D  +WL+F NV  L++ G
Subjt:  KIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLVIQG

Query:  NGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQNCNI
         G I+G G  WW      +P      ++    +A+ F+ C++L +  L   ++ + H+    C +   S L + APEDSPNTDGI V+ + ++ I +  I
Subjt:  NGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQNCNI

Query:  ATG
         TG
Subjt:  ATG

Q94AJ5 Probable polygalacturonase At1g801704.2e-3735.92Show/hide
Query:  KIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLVIQG
        +++ V ++GA G+G TDD++AF  AW   C +   + +LVP   T LL P++  GPC  + + ++I G I+AP+D D W+  +   WL F  +S L ++G
Subjt:  KIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLVIQG

Query:  NGQIDGQGAAWWDRKSDERPTVRYHHHSD---SHLSALAFHDCDSLQLSGLTHINSPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQN
         G ++G G  WW+R          H+HS+      +AL FH C ++++  L  I+S + H+ +  C   +IS L ++AP  SPNTDGI +S S  + I N
Subjt:  NGQIDGQGAAWWDRKSDERPTVRYHHHSD---SHLSALAFHDCDSLQLSGLTHINSPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQN

Query:  CNIATG
          ++TG
Subjt:  CNIATG

Q9FY19 Polygalacturonase1.9e-2937.25Show/hide
Query:  IIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLVIQGN
        + +V HYGA GDGK D + AF K W A C   + +  LVP+ + F++N L F GPC       K+ G I A  D   WK  +++ W+ F+ ++   + G 
Subjt:  IIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSGLVIQGN

Query:  GQIDGQGAAWWDRKSDERPTV--RYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQNCN
        G IDGQG  WW   SD+  T+  R   +     +A+      S+ +  LT  NSP+ H+    C+   I  + I AP DSPNTDGID+  S   +I+ C 
Subjt:  GQIDGQGAAWWDRKSDERPTV--RYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQIQNCN

Query:  IATG
        I TG
Subjt:  IATG

Q9LW07 Probable polygalacturonase At3g157209.9e-5551.92Show/hide
Query:  IIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSG
        I  +   +DV  +GA GDG TDDSQAFLKAW AVC        +VP+  TF+L PL FQG C S+ V V++LGK+VAPS    WK  D + W+LF+++ G
Subjt:  IIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSG

Query:  LVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQI
        LVI+G+G+I+GQG++WW+ K   RPT            AL F  C++L+LSGLTH++SP +H+HI  CN+ +IS L I APE SPNTDGIDV  S++V I
Subjt:  LVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQI

Query:  QNCNIATG
        Q+C IATG
Subjt:  QNCNIATG

Arabidopsis top hitse value%identityAlignment
AT3G15720.1 Pectin lyase-like superfamily protein7.1e-5651.92Show/hide
Query:  IIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSG
        I  +   +DV  +GA GDG TDDSQAFLKAW AVC        +VP+  TF+L PL FQG C S+ V V++LGK+VAPS    WK  D + W+LF+++ G
Subjt:  IIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSG

Query:  LVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQI
        LVI+G+G+I+GQG++WW+ K   RPT            AL F  C++L+LSGLTH++SP +H+HI  CN+ +IS L I APE SPNTDGIDV  S++V I
Subjt:  LVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQI

Query:  QNCNIATG
        Q+C IATG
Subjt:  QNCNIATG

AT3G15720.2 Pectin lyase-like superfamily protein1.3e-5450.96Show/hide
Query:  IIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSG
        I  +   +DV  +GA GDG TDDSQAFLKAW AVC        +VP+  TF+L PL FQG C S+ V V++LGK+VAPS    WK  D + W+LF+++ G
Subjt:  IIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSG

Query:  LVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQI
        LVI+G+G+I+GQG++WW+ K   RPT               F  C++L+LSGLTH++SP +H+HI  CN+ +IS L I APE SPNTDGIDV  S++V I
Subjt:  LVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQI

Query:  QNCNIATG
        Q+C IATG
Subjt:  QNCNIATG

AT4G35670.1 Pectin lyase-like superfamily protein6.4e-4947.14Show/hide
Query:  IINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEA-ATPSAMLVPSLRTFLLNPLNFQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSG
        I+  K  +V+++ A GDG+TDDS+AFL+AW A C        +L+PS +TFLL P  FQGPC SSS+ V++ G IVAPSD  AW D  +  W+ FS VSG
Subjt:  IINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEA-ATPSAMLVPSLRTFLLNPLNFQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSG

Query:  LVIQGNGQIDGQGAAWWD--RKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDV
        L+I G+G ID +G+++W+   K+ +RPT            AL    CD+L+++G+T I+SPK+H+ I  CN  +IS +N+ APE SPNTDGID+S ST++
Subjt:  LVIQGNGQIDGQGAAWWD--RKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDV

Query:  QIQNCNIATG
         I +  I TG
Subjt:  QIQNCNIATG

AT5G27530.1 Pectin lyase-like superfamily protein1.9e-4843.75Show/hide
Query:  IINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEA-ATPSAMLVPSLRTFLLNPLNFQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSG
        ++N +I +V+ +GA GDG+TDDS AFL+AW A C      + + +PS +T+LL P+ F+GPC S+S+ +++ G IVAPS++ +W +  ++ W+ FS V G
Subjt:  IINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEA-ATPSAMLVPSLRTFLLNPLNFQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVSG

Query:  LVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQI
        L+I G+G I+G+G+++W+                    AL   +C++L ++G+T I+SPKSH+ I  C++ +ISK+NILAPE+SPNTDGID+SYST+V I
Subjt:  LVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQI

Query:  QNCNIATG
         +  I TG
Subjt:  QNCNIATG

AT5G44840.1 Pectin lyase-like superfamily protein2.3e-4643.06Show/hide
Query:  IIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVC-EAATPSAMLVPSLRTFLLNPLNFQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVS
        I++N +I DV+ +GA G+G TDDS+AF+KAW A+C         ++PS +TFLL PL FQGPC S SV VK  GKIVAP +  AW D+    W+ F  + 
Subjt:  IIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVC-EAATPSAMLVPSLRTFLLNPLNFQGPCMSSSVGVKILGKIVAPSDLDAWKDFDAENWLLFSNVS

Query:  GLVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQ
        GL + G+G I G+G+++W +                    L F  C+ L ++G+T  NSPK+H+ I  C    I+K+ ++AP DSPNTDGI++S S+DV 
Subjt:  GLVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMHIVRCNHASISKLNILAPEDSPNTDGIDVSYSTDVQ

Query:  IQNCNIATG
        I +  I TG
Subjt:  IQNCNIATG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTAGGTTTTGTAGTAGCTATAATACTAGTGATTTATCTGATGTTTGCATTAGGAAAACATCATCATCCAAAAAGCAACAATGATCCTATCATTATAAACTATAAGATCAT
TGATGTGGTCCATTATGGGGCCGCTGGGGATGGAAAGACAGATGATTCACAAGCATTTCTAAAGGCTTGGATGGCTGTTTGTGAAGCTGCAACTCCCTCAGCTATGCTAG
TACCATCTCTCAGAACATTTTTGCTGAACCCATTGAACTTTCAAGGCCCGTGCATGTCCTCCAGTGTCGGTGTTAAAATCCTTGGGAAAATTGTGGCTCCAAGTGACCTT
GATGCCTGGAAAGACTTTGATGCGGAAAATTGGTTGCTGTTCTCTAATGTGAGCGGACTTGTCATACAAGGGAATGGTCAAATTGATGGGCAAGGAGCTGCTTGGTGGGA
TCGGAAATCGGACGAAAGACCCACGGTCCGTTACCATCACCATTCCGATTCTCACTTGTCTGCGTTGGCATTTCACGACTGTGACAGCCTACAGCTTTCTGGATTAACAC
ACATTAACAGTCCCAAAAGCCATATGCACATAGTTCGCTGCAATCATGCTTCCATCTCTAAACTGAACATACTGGCACCTGAGGATAGTCCCAACACTGATGGTATTGAT
GTTTCCTATTCGACTGATGTTCAGATTCAGAATTGCAATATTGCAACAGGTAGTACAATCCCAGTTGAATATTAA
mRNA sequenceShow/hide mRNA sequence
GTAGGTTTTGTAGTAGCTATAATACTAGTGATTTATCTGATGTTTGCATTAGGAAAACATCATCATCCAAAAAGCAACAATGATCCTATCATTATAAACTATAAGATCAT
TGATGTGGTCCATTATGGGGCCGCTGGGGATGGAAAGACAGATGATTCACAAGCATTTCTAAAGGCTTGGATGGCTGTTTGTGAAGCTGCAACTCCCTCAGCTATGCTAG
TACCATCTCTCAGAACATTTTTGCTGAACCCATTGAACTTTCAAGGCCCGTGCATGTCCTCCAGTGTCGGTGTTAAAATCCTTGGGAAAATTGTGGCTCCAAGTGACCTT
GATGCCTGGAAAGACTTTGATGCGGAAAATTGGTTGCTGTTCTCTAATGTGAGCGGACTTGTCATACAAGGGAATGGTCAAATTGATGGGCAAGGAGCTGCTTGGTGGGA
TCGGAAATCGGACGAAAGACCCACGGTCCGTTACCATCACCATTCCGATTCTCACTTGTCTGCGTTGGCATTTCACGACTGTGACAGCCTACAGCTTTCTGGATTAACAC
ACATTAACAGTCCCAAAAGCCATATGCACATAGTTCGCTGCAATCATGCTTCCATCTCTAAACTGAACATACTGGCACCTGAGGATAGTCCCAACACTGATGGTATTGAT
GTTTCCTATTCGACTGATGTTCAGATTCAGAATTGCAATATTGCAACAGGTAGTACAATCCCAGTTGAATATTAA
Protein sequenceShow/hide protein sequence
VGFVVAIILVIYLMFALGKHHHPKSNNDPIIINYKIIDVVHYGAAGDGKTDDSQAFLKAWMAVCEAATPSAMLVPSLRTFLLNPLNFQGPCMSSSVGVKILGKIVAPSDL
DAWKDFDAENWLLFSNVSGLVIQGNGQIDGQGAAWWDRKSDERPTVRYHHHSDSHLSALAFHDCDSLQLSGLTHINSPKSHMHIVRCNHASISKLNILAPEDSPNTDGID
VSYSTDVQIQNCNIATGSTIPVEY