; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi07G004780 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G004780
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRan BP2/NZF zinc finger-like superfamily protein isoform 2
Genome locationchr07:5032676..5036407
RNA-Seq ExpressionLsi07G004780
SyntenyLsi07G004780
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044427.1 putative RNA-binding protein C17H9.04c-like [Cucumis melo var. makuwa]2.1e-8183.15Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        MSRPGDWNCRSCQHLNFQRRDMCQRCG+PK+G G GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  TFASPARTTASAWKSGDWICARLLTFKKTFVKSPVAMNITLQAGWSASDAVLQETPTNKTSHARILLHHQVLGMLPIEKNFKET
         FASPAR  ASAWKSG                  VAMNITLQAGWSA DAVL+ETPTNKTS A+ILLHHQVLGML  EKNFKET
Subjt:  TFASPARTTASAWKSGDWICARLLTFKKTFVKSPVAMNITLQAGWSASDAVLQETPTNKTSHARILLHHQVLGMLPIEKNFKET

KGN52873.1 hypothetical protein Csa_014917 [Cucumis sativus]2.8e-6293.44Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        MSRPGDWNCRSCQHLNFQRRDMCQRCG+PK+G G GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPR SPRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  TFASPARTTASAWKSGDWICAR
         F SPART ASAWKSGDWICAR
Subjt:  TFASPARTTASAWKSGDWICAR

XP_008454250.1 PREDICTED: uncharacterized RNA-binding protein C17H9.04c-like [Cucumis melo]2.0e-6394.26Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        MSRPGDWNCRSCQHLNFQRRDMCQRCG+PK+G G GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  TFASPARTTASAWKSGDWICAR
         FASPAR  ASAWKSGDWICAR
Subjt:  TFASPARTTASAWKSGDWICAR

XP_022955940.1 uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata]5.9e-6087.7Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        M+RPGDWNC SC HLNFQRRD+CQRCGDPK G GG R GSGFG+GGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFD+PRP+PRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  TFASPARTTASAWKSGDWICAR
         FA+PAR+ ASAWKSGDWICAR
Subjt:  TFASPARTTASAWKSGDWICAR

XP_038892097.1 zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida]4.0e-6495.08Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        MSRPGDWNCRSCQHLNFQRRDMCQRCGDPK+G G GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISP+
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  TFASPARTTASAWKSGDWICAR
         FASPART ASAWKSGDWICAR
Subjt:  TFASPARTTASAWKSGDWICAR

TrEMBL top hitse value%identityAlignment
A0A0A0KTI0 Uncharacterized protein1.4e-6293.44Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        MSRPGDWNCRSCQHLNFQRRDMCQRCG+PK+G G GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPR SPRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  TFASPARTTASAWKSGDWICAR
         F SPART ASAWKSGDWICAR
Subjt:  TFASPARTTASAWKSGDWICAR

A0A1S3BZE4 uncharacterized RNA-binding protein C17H9.04c-like9.5e-6494.26Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        MSRPGDWNCRSCQHLNFQRRDMCQRCG+PK+G G GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  TFASPARTTASAWKSGDWICAR
         FASPAR  ASAWKSGDWICAR
Subjt:  TFASPARTTASAWKSGDWICAR

A0A5A7TRE1 Putative RNA-binding protein C17H9.04c-like1.0e-8183.15Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        MSRPGDWNCRSCQHLNFQRRDMCQRCG+PK+G G GRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  TFASPARTTASAWKSGDWICARLLTFKKTFVKSPVAMNITLQAGWSASDAVLQETPTNKTSHARILLHHQVLGMLPIEKNFKET
         FASPAR  ASAWKSG                  VAMNITLQAGWSA DAVL+ETPTNKTS A+ILLHHQVLGML  EKNFKET
Subjt:  TFASPARTTASAWKSGDWICARLLTFKKTFVKSPVAMNITLQAGWSASDAVLQETPTNKTSHARILLHHQVLGMLPIEKNFKET

A0A6J1GWG9 uncharacterized RNA-binding protein C17H9.04c-like2.9e-6087.7Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        M+RPGDWNC SC HLNFQRRD+CQRCGDPK G GG R GSGFG+GGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFD+PRP+PRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  TFASPARTTASAWKSGDWICAR
         FA+PAR+ ASAWKSGDWICAR
Subjt:  TFASPARTTASAWKSGDWICAR

A0A6J1IX27 ranBP2-type zinc finger protein At1g67325-like3.5e-5886.89Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF
        M+RPGDWNC SC HLNFQRRD+CQRCGDPK G GGGR GSGFG+GGSDVRPGDWYCS+GNCGAHNFASRSSCFKCGAFKDDMSAFDFD+PRP+PRGISPF
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPF

Query:  TFASPARTTASAWKSGDWICAR
         F +PAR+ ASAWKSGDWICAR
Subjt:  TFASPARTTASAWKSGDWICAR

SwissProt top hitse value%identityAlignment
O13801 Uncharacterized RNA-binding protein C17H9.04c3.9e-0631.34Show/hide
Query:  KKMSRPGDWNCRSCQHLNFQRRDMCQRCGDP------------------KNGSGGGRGGSGF--GYGGS-------------------------------
        K   RPGDWNC  C   NFQRR  C RC  P                    G+  G G S F   YGGS                               
Subjt:  KKMSRPGDWNCRSCQHLNFQRRDMCQRCGDP------------------KNGSGGGRGGSGF--GYGGS-------------------------------

Query:  ----DVRPGDWYCSVGNCGAHNFASRSSCFKCGA
              R GDW C    CG HNFA    C +CGA
Subjt:  ----DVRPGDWYCSVGNCGAHNFASRSSCFKCGA

P32770 Asparagine-rich protein6.2e-0457.58Show/hide
Query:  EKKKMSRPGDWNCRSCQHLNFQRRDMCQRCGDP
        + K   RPGDWNC SC   NFQRR  C RC  P
Subjt:  EKKKMSRPGDWNCRSCQHLNFQRRDMCQRCGDP

Q27294 RNA-binding protein cabeza7.4e-0553.19Show/hide
Query:  RPGDWNCRSCQHLNFQRRDMCQRCGDPK---NGSGGGRGGSGFGYGG
        R GDW C SC + NF  R+ C RC  PK    GS GG GG G+G GG
Subjt:  RPGDWNCRSCQHLNFQRRDMCQRCGDPK---NGSGGGRGGSGFGYGG

Arabidopsis top hitse value%identityAlignment
AT1G70650.1 Ran BP2/NZF zinc finger-like superfamily protein3.4e-0532.14Show/hide
Query:  MKEKKKMSRP---GDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKC
        +KE++K   P   GDW C++C  LNF +   C RC D                    + PG+W C   +C   NF   S C KC
Subjt:  MKEKKKMSRP---GDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKC

AT1G70650.2 Ran BP2/NZF zinc finger-like superfamily protein3.4e-0532.14Show/hide
Query:  MKEKKKMSRP---GDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKC
        +KE++K   P   GDW C++C  LNF +   C RC D                    + PG+W C   +C   NF   S C KC
Subjt:  MKEKKKMSRP---GDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKC

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein4.4e-2139.5Show/hide
Query:  GDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFAS
        GDW C +CQH NF++R+ CQ+CG PK    GG   S + Y  ++V  GDWYC   NCG+HN+ASR+SC++CG  K + +   +        G     + +
Subjt:  GDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFAS

Query:  PARTTASAWKSGDWICARL
                WK+GDW+C R+
Subjt:  PARTTASAWKSGDWICARL

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein6.8e-3856.16Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSG----------GGRGGSGFGY-GGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSA-----
        MSRPGDWNCRSC HLNFQRRD CQRCGD ++G G          GGR  S FG+  GSDVRPGDWYC+VGNCG HNFASRS+CFKCG FKD+  A     
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSG----------GGRGGSGFGY-GGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSA-----

Query:  -------FDFDIPRPSPRGISPFTFASPARTTASAWKSGDWICARL
               FD DI R             P     S+WKSGDWIC R+
Subjt:  -------FDFDIPRPSPRGISPFTFASPARTTASAWKSGDWICARL

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein1.9e-3252.48Show/hide
Query:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPK---------NGSGGGRGGSGFGYG-GSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFD----
        M+RPGDWNCR C HLNFQRRD CQRC +P+         +G GG    S FG+  G DVRPGDWYC++G+CG HNFA+RSSCFKCGA KD+ S       
Subjt:  MSRPGDWNCRSCQHLNFQRRDMCQRCGDPK---------NGSGGGRGGSGFGYG-GSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFD----

Query:  ---FDIPRPSPRGISPFTFASP--ARTTASAWKSGDWICAR
            D+     RG+  F  +S     T  S WKSGDWIC R
Subjt:  ---FDIPRPSPRGISPFTFASP--ARTTASAWKSGDWICAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAGAAAAAGAAGATGAGTAGACCAGGAGACTGGAATTGCAGGTCGTGCCAGCACTTGAACTTCCAGAGAAGGGACATGTGCCAGCGGTGCGGCGATCCAAAGAA
TGGCAGCGGTGGCGGAAGAGGCGGATCTGGTTTCGGGTACGGAGGGTCAGATGTGAGGCCTGGGGACTGGTATTGTAGTGTGGGGAACTGTGGAGCTCACAATTTTGCAA
GCCGGTCAAGTTGCTTCAAATGTGGGGCTTTCAAAGACGACATGTCGGCCTTCGACTTTGATATTCCTCGTCCTAGTCCTAGAGGGATTTCCCCATTTACTTTTGCCAGT
CCCGCCCGTACTACTGCCTCGGCTTGGAAATCTGGTGACTGGATTTGTGCCCGACTTCTTACTTTTAAAAAAACATTCGTAAAAAGTCCGGTTGCAATGAACATAACTTT
GCAAGCAGGATGGAGTGCTTCAGATGCAGTGCTCCAAGAGACTCCTACTAACAAAACTAGCCATGCCAGAATCCTCCTTCATCATCAAGTTTTGGGTATGCTTCCAATTG
AGAAAAATTTCAAAGAGACTCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGAGAAAAAGAAGATGAGTAGACCAGGAGACTGGAATTGCAGGTCGTGCCAGCACTTGAACTTCCAGAGAAGGGACATGTGCCAGCGGTGCGGCGATCCAAAGAA
TGGCAGCGGTGGCGGAAGAGGCGGATCTGGTTTCGGGTACGGAGGGTCAGATGTGAGGCCTGGGGACTGGTATTGTAGTGTGGGGAACTGTGGAGCTCACAATTTTGCAA
GCCGGTCAAGTTGCTTCAAATGTGGGGCTTTCAAAGACGACATGTCGGCCTTCGACTTTGATATTCCTCGTCCTAGTCCTAGAGGGATTTCCCCATTTACTTTTGCCAGT
CCCGCCCGTACTACTGCCTCGGCTTGGAAATCTGGTGACTGGATTTGTGCCCGACTTCTTACTTTTAAAAAAACATTCGTAAAAAGTCCGGTTGCAATGAACATAACTTT
GCAAGCAGGATGGAGTGCTTCAGATGCAGTGCTCCAAGAGACTCCTACTAACAAAACTAGCCATGCCAGAATCCTCCTTCATCATCAAGTTTTGGGTATGCTTCCAATTG
AGAAAAATTTCAAAGAGACTCCATAACCTGCATTAGCTTTTCTTCTCTTCTCTCTCTTTTTTTGTTTTTGGTTTTGTAACCTTTTTCTTTTATGAGTGATGTTAATTTCT
GTGATGATAAAAAATTGAGATATTGTCCAAAAA
Protein sequenceShow/hide protein sequence
MKEKKKMSRPGDWNCRSCQHLNFQRRDMCQRCGDPKNGSGGGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFTFAS
PARTTASAWKSGDWICARLLTFKKTFVKSPVAMNITLQAGWSASDAVLQETPTNKTSHARILLHHQVLGMLPIEKNFKETP