CuGenDBv2

Gene ID	Lsi07G004880
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Genome location	chr07:5140384..5140712
RNA-Seq Expression	Lsi07G004880
Synteny	Lsi07G004880
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0022900 - electron transport chain (biological process) GO:0009507 - chloroplast (cellular component) GO:0009522 - photosystem I (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0048038 - quinone binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	IPR001280 - Photosystem I PsaA/PsaB IPR036408 - Photosystem I PsaA/PsaB superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032901.1 photosystem I P700 apoprotein A1 [Cucumis melo var. makuwa]

4.5e-35

97.4

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Query:  MGAFAISYGHRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG
        MG FAISYGHRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARI AVG
Subjt:  MGAFAISYGHRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG

KAF1855876.1 hypothetical protein Lal_00028295 [Lupinus albus]

7.2e-33

93.51

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Query:  MGAFAISYGHRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG
        MG  AISYG +HPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARI AVG
Subjt:  MGAFAISYGHRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG

KAG5049440.1 hypothetical protein JHK85_010543 [Glycine max]

9.4e-33

92.21

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Query:  MGAFAISYGHRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG
        MG   ISY HRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRA+GVTHYLLGGIATTWAFFLARI AVG
Subjt:  MGAFAISYGHRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG

RDY14672.1 Photosystem I P700 chlorophyll a apoprotein A1, partial [Mucuna pruriens]

9.4e-33

93.51

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Query:  MGAFAISYGHRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG
        MG   ISYG RHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARI AVG
Subjt:  MGAFAISYGHRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG

RZC16650.1 Photosystem I P700 chlorophyll a apoprotein A1, partial [Glycine soja]

7.2e-33

93.51

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Query:  MGAFAISYGHRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG
        MG   ISY HRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARI AVG
Subjt:  MGAFAISYGHRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG

TrEMBL top hits

e value

%identity

Alignment

A0A371IHY8 Photosystem I P700 chlorophyll a apoprotein A1 (Fragment)

4.6e-33

93.51

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Query:  MGAFAISYGHRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG
        MG   ISYG RHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARI AVG
Subjt:  MGAFAISYGHRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG

A0A445L0K3 Photosystem I P700 chlorophyll a apoprotein A1 (Fragment)

3.5e-33

93.51

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Query:  MGAFAISYGHRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG
        MG   ISY HRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARI AVG
Subjt:  MGAFAISYGHRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG

A0A5A7STQ0 Photosystem I P700 apoprotein A1

2.2e-35

97.4

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Query:  MGAFAISYGHRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG
        MG FAISYGHRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARI AVG
Subjt:  MGAFAISYGHRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG

A0A6A5L8W7 Uncharacterized protein

3.5e-33

93.51

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Query:  MGAFAISYGHRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG
        MG  AISYG +HPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARI AVG
Subjt:  MGAFAISYGHRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG

A0A6D2KNH8 Uncharacterized protein

6.0e-33

93.51

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Query:  MGAFAISYGHRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG
        MG  AISYGH+H SGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARI AVG
Subjt:  MGAFAISYGHRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG

SwissProt top hits

e value

%identity

Alignment

A4QJB5 Photosystem I P700 chlorophyll a apoprotein A1

1.0e-29

98.44

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Query:  SGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG
        SGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARI AVG
Subjt:  SGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG

A4QJJ9 Photosystem I P700 chlorophyll a apoprotein A1

1.0e-29

98.44

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Query:  SGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG
        SGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARI AVG
Subjt:  SGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG

A4QK18 Photosystem I P700 chlorophyll a apoprotein A1

1.0e-29

98.44

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Query:  SGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG
        SGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARI AVG
Subjt:  SGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG

Q3V534 Photosystem I P700 chlorophyll a apoprotein A1

1.0e-29

98.44

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Query:  SGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG
        SGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARI AVG
Subjt:  SGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG

Q70Y03 Photosystem I P700 chlorophyll a apoprotein A1

1.0e-29

98.44

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Query:  SGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG
        SGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARI AVG
Subjt:  SGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG

Arabidopsis top hits

e value

%identity

Alignment

ATCG00340.1 Photosystem I, PsaA/PsaB protein

2.0e-09

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Query:  SGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA
        S RGYWQELIE++ WAH +  +A       +P ALSIVQ R VG+ H+ +G I T  AF +A
Subjt:  SGRGYWQELIESIVWAHNKLKVAP----ATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLA

ATCG00350.1 Photosystem I, PsaA/PsaB protein

9.4e-31

96.88

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Query:  SGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG
        SGRGYWQELIESIVWAHNKLKVAPATQPRALSI+QGRAVGVTHYLLGGIATTWAFFLARI AVG
Subjt:  SGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG

Sequences

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CDS sequence

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ATGGGTGCCTTCGCGATTTCTTATGGGCACAGGCATCCCAGCGGGCGTGGTTATTGGCAAGAACTTATTGAATCCATCGTTTGGGCTCATAATAAATTAAAAGTTGCTCC
TGCTACTCAGCCTAGAGCCTTGAGCATTGTCCAAGGACGTGCTGTAGGAGTAACCCATTACCTTCTAGGTGGAATTGCCACAACATGGGCGTTCTTCTTAGCAAGAATTA
CTGCAGTCGGATAA

mRNA sequence

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Protein sequence

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MGAFAISYGHRHPSGRGYWQELIESIVWAHNKLKVAPATQPRALSIVQGRAVGVTHYLLGGIATTWAFFLARITAVG

Lsi07G004880 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome