; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi07G005080 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G005080
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionphotosystem I reaction center subunit VI, chloroplastic-like
Genome locationchr07:5325834..5327282
RNA-Seq ExpressionLsi07G005080
SyntenyLsi07G005080
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009538 - photosystem I reaction center (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004928 - Photosystem I PsaH, reaction centre subunit VI


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581890.1 Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.3e-7297.22Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAGTKLPLRP+RQSFRPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGK+
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL

KAG7018324.1 Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-7297.22Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAGTKLPLRP+RQSFRPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGK+
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL

XP_008447512.1 PREDICTED: photosystem I reaction center subunit VI, chloroplastic [Cucumis melo]3.0e-7297.22Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP TVKGLGGSSLAG KLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGK+
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL

XP_011651500.1 photosystem I reaction center subunit VI, chloroplastic [Cucumis sativus]1.0e-7297.92Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAG KLPLRPSRQ+FRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL
        LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGK+
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL

XP_022955723.1 photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita moschata]1.0e-7297.92Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGK+
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL

TrEMBL top hitse value%identityAlignment
A0A0A0LAW4 Uncharacterized protein5.0e-7397.92Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAG KLPLRPSRQ+FRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL
        LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGK+
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL

A0A1S3BI80 photosystem I reaction center subunit VI, chloroplastic1.4e-7297.22Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP TVKGLGGSSLAG KLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGK+
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL

A0A5D3C9C3 Photosystem I reaction center subunit VI1.4e-7297.22Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP TVKGLGGSSLAG KLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGK+
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL

A0A6J1GUS6 photosystem I reaction center subunit VI, chloroplastic-like5.0e-7397.92Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGK+
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL

A0A6J1IVS0 photosystem I reaction center subunit VI, chloroplastic-like5.0e-7397.92Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGK+
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL

SwissProt top hitse value%identityAlignment
A2Y7D9 Photosystem I reaction center subunit VI, chloroplastic4.2e-5374.65Show/hide
Query:  LATLAAVQPVTVKGLGGSSLAGTKLPLRPS-RQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLL
        +A+L AVQPV VKGL GSS++G KL +RPS R   R       AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKRGLL
Subjt:  LATLAAVQPVTVKGLGGSSLAGTKLPLRPS-RQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLL

Query:  LKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL
        LKFLLLGGG+ +AY SA+A  D+LPIKKGPQLPP  GPRGK+
Subjt:  LKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL

O04006 Photosystem I reaction center subunit VI, chloroplastic9.3e-6181.38Show/hide
Query:  MASLATLAAVQPVT-VKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MAS AT+AAVQP + VKGLGGSSL G KL ++PSRQSF+PK+ +AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQPVT-VKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL
        GLLLKFL+LGGG+ L Y SA++  DVLPIK+GPQ  PKLGPRGKL
Subjt:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL

P22179 Photosystem I reaction center subunit VI, chloroplastic2.9e-6279.86Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP T+KGL GSS+AGTKL ++P+RQSF+  N ++GA+VAKYGDKSVYFDLED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL
        LLLKFL+LGGG+ L Y SA AP DVLPI +GPQ PPKLGPRGK+
Subjt:  LLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL

Q9SUI6 Photosystem I reaction center subunit VI-2, chloroplastic9.3e-6181.38Show/hide
Query:  MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MAS AT+AAVQP   VKGLGGSSLAG KL ++PSRQSF+ K+ +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL
        GLLLKFL+LGGG+ L Y SA +  DVLPIK+GPQ PPKLGPRGKL
Subjt:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL

Q9SUI7 Photosystem I reaction center subunit VI-1, chloroplastic3.5e-6079.31Show/hide
Query:  MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MASLAT+AAV+P   +KGLGGSSLAG KL ++PSR SF+PK+ +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL
        GLLLKFL+LGGG+ L Y SAT+  +VLPIK+GPQ PPKLGPRGKL
Subjt:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL

Arabidopsis top hitse value%identityAlignment
AT1G52230.1 photosystem I subunit H26.6e-6281.38Show/hide
Query:  MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MAS AT+AAVQP   VKGLGGSSLAG KL ++PSRQSF+ K+ +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL
        GLLLKFL+LGGG+ L Y SA +  DVLPIK+GPQ PPKLGPRGKL
Subjt:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL

AT3G16140.1 photosystem I subunit H-12.5e-6179.31Show/hide
Query:  MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MASLAT+AAV+P   +KGLGGSSLAG KL ++PSR SF+PK+ +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL
        GLLLKFL+LGGG+ L Y SAT+  +VLPIK+GPQ PPKLGPRGKL
Subjt:  GLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTTAGCAACATTAGCCGCCGTTCAACCGGTCACCGTAAAGGGCCTTGGTGGAAGCTCCCTTGCCGGAACCAAGCTCCCTCTCAGGCCTTCTCGCCAGAGCTT
CAGACCAAAAAACTTCAAGGCTGGTGCTGTGGTTGCTAAGTATGGTGACAAAAGTGTTTACTTTGATTTGGAGGATTTGGGCAACACTACTGGACAGTGGGATTTGTATG
GATCTGATGCTCCTTCACCATACAATTCTCTTCAGAGCAAATTCTTTGAGACCTTTGCTGCTCCATTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGCTACTAGGTGGT
GGTGCCACTTTAGCTTATTTCAGTGCTACTGCCCCAGATGATGTTCTTCCCATCAAGAAAGGACCTCAACTTCCACCAAAACTTGGGCCACGTGGCAAGCTCTAA
mRNA sequenceShow/hide mRNA sequence
ACTAGATACTCTCAAATCTCAAAATGACCTCCGGAGTCCAAGGCAAGATCCAAAATGTGCCCCCATATCAACAAGGATAGGGTTATCCAGCTCCTTCCAACGTGGCACTT
CCTAAGTGACACTCCAAATTGTCTTCTAAGATCCCATTTCGCCACGTGTCAAAAGAAAATCCAATCACAGGATCGAAATCCCATTTGAAGCCTCAGTTTCTCCCTCAGCC
TGCAACTCCAAGTTTGTTCCTTTTCAAAGCAAAAGGCAGTAAGGCAGGCAACAATGGCTTCCTTAGCAACATTAGCCGCCGTTCAACCGGTCACCGTAAAGGGCCTTGGT
GGAAGCTCCCTTGCCGGAACCAAGCTCCCTCTCAGGCCTTCTCGCCAGAGCTTCAGACCAAAAAACTTCAAGGCTGGTGCTGTGGTTGCTAAGTATGGTGACAAAAGTGT
TTACTTTGATTTGGAGGATTTGGGCAACACTACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCATACAATTCTCTTCAGAGCAAATTCTTTGAGACCTTTG
CTGCTCCATTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGCTACTAGGTGGTGGTGCCACTTTAGCTTATTTCAGTGCTACTGCCCCAGATGATGTTCTTCCCATCAAG
AAAGGACCTCAACTTCCACCAAAACTTGGGCCACGTGGCAAGCTCTAA
Protein sequenceShow/hide protein sequence
MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGG
GATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKL