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Lsi07G005350 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G005350
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr07:5680578..5681045
RNA-Seq ExpressionLsi07G005350
SyntenyLsi07G005350
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054121.1 hypothetical protein E6C27_scaffold131G00330 [Cucumis melo var. makuwa]1.9e-4870.06Show/hide
Query:  EEFYPFLRDGSLAEVSKIQIFNKIQQLKREYLEKKLELRKMRMQYLK------YDDDHDEGFELSNRLWGEV-ETGSASTSKALDVCSRSYFEGFFDGHG
        EEFYPFLR+GSLAEVSKIQIF+KIQQLK EYLE KLELRKMR + +K      Y+D  DEGFELSN+LWGEV ET  AS SKAL+VCSR+Y+EGFF+  G
Subjt:  EEFYPFLRDGSLAEVSKIQIFNKIQQLKREYLEKKLELRKMRMQYLK------YDDDHDEGFELSNRLWGEV-ETGSASTSKALDVCSRSYFEGFFDGHG

Query:  LHIQLFTPSFLDATNKDIHHLFSLQNHHFLIKANLKAQLAQLKYDIIQARDFNNPTN
        L +QLF PSF DAT KDI HLF+L++H  L KA L AQ+ QLKYD+IQAR  NNPTN
Subjt:  LHIQLFTPSFLDATNKDIHHLFSLQNHHFLIKANLKAQLAQLKYDIIQARDFNNPTN

KAG6575378.1 hypothetical protein SDJN03_26017, partial [Cucurbita argyrosperma subsp. sororia]2.3e-1453.85Show/hide
Query:  DEGFELSNRLWG--EVETGSASTSKALDVCSRSYFEGFFDGHGLHIQLFTPSFLDATNKDIHHLFSLQNHHFLIKANLKAQLAQLKYDIIQ
        DE FELS R  G  E+ET S S S  L+V ++  FE   + H L + LF PS LDA  K++  LF LQN + LIKANLKAQLAQLK+DI++
Subjt:  DEGFELSNRLWG--EVETGSASTSKALDVCSRSYFEGFFDGHGLHIQLFTPSFLDATNKDIHHLFSLQNHHFLIKANLKAQLAQLKYDIIQ

KAG6585881.1 hypothetical protein SDJN03_18614, partial [Cucurbita argyrosperma subsp. sororia]2.6e-3759.87Show/hide
Query:  EEFYPFLRDGSLAEVSKIQIFNKIQQLKREYLEKKLELRKMRMQYLKYDDD----HDEGFELSNRLWG----EVETGSASTSKALDVCSRSYFEGFFDGH
        E+FYPFLR GSLA+V KIQIF+KIQQLKR++LEK     + R+Q + + DD     DE FELSNRLWG    E ET + STSKA D  S S FE  F+GH
Subjt:  EEFYPFLRDGSLAEVSKIQIFNKIQQLKREYLEKKLELRKMRMQYLKYDDD----HDEGFELSNRLWG----EVETGSASTSKALDVCSRSYFEGFFDGH

Query:  GLHIQLFTPSFLDATNKDIHHLFSLQNHHFLIKANLKAQLAQLKYDIIQARDFNNPT
         LH+  FTPSFL AT K++  L  LQNHH LIKANLKAQLAQLK+ + Q R F N T
Subjt:  GLHIQLFTPSFLDATNKDIHHLFSLQNHHFLIKANLKAQLAQLKYDIIQARDFNNPT

KGN49711.1 hypothetical protein Csa_018385 [Cucumis sativus]1.5e-2449.68Show/hide
Query:  EEFYPFLRDGSLAEVSKIQIFNKIQQLKREYLEKKLELRKMRMQYLKYDDD------HDEGFELSNRLWGEV-ETGSASTSKALDVCSRSYFEGFFDGHG
        EEFYPFLR+GSLAEVS+ QIF KIQ+LKREYL++KLELRKMR + +K +DD       DEGFELSN +WG+V ET  AS SK L+               
Subjt:  EEFYPFLRDGSLAEVSKIQIFNKIQQLKREYLEKKLELRKMRMQYLKYDDD------HDEGFELSNRLWGEV-ETGSASTSKALDVCSRSYFEGFFDGHG

Query:  LHIQLFTPSFLDATNKDIHHLFSLQNHHFLIKANLKAQLAQLKYDIIQARDFNNPTN
                   DA  KDI  LF+L++  FL K+ L ++L +LK DIIQA    +PT+
Subjt:  LHIQLFTPSFLDATNKDIHHLFSLQNHHFLIKANLKAQLAQLKYDIIQARDFNNPTN

TrEMBL top hitse value%identityAlignment
A0A0A0KPQ5 Uncharacterized protein7.1e-2549.68Show/hide
Query:  EEFYPFLRDGSLAEVSKIQIFNKIQQLKREYLEKKLELRKMRMQYLKYDDD------HDEGFELSNRLWGEV-ETGSASTSKALDVCSRSYFEGFFDGHG
        EEFYPFLR+GSLAEVS+ QIF KIQ+LKREYL++KLELRKMR + +K +DD       DEGFELSN +WG+V ET  AS SK L+               
Subjt:  EEFYPFLRDGSLAEVSKIQIFNKIQQLKREYLEKKLELRKMRMQYLKYDDD------HDEGFELSNRLWGEV-ETGSASTSKALDVCSRSYFEGFFDGHG

Query:  LHIQLFTPSFLDATNKDIHHLFSLQNHHFLIKANLKAQLAQLKYDIIQARDFNNPTN
                   DA  KDI  LF+L++  FL K+ L ++L +LK DIIQA    +PT+
Subjt:  LHIQLFTPSFLDATNKDIHHLFSLQNHHFLIKANLKAQLAQLKYDIIQARDFNNPTN

A0A5A7UKP8 Uncharacterized protein9.2e-4970.06Show/hide
Query:  EEFYPFLRDGSLAEVSKIQIFNKIQQLKREYLEKKLELRKMRMQYLK------YDDDHDEGFELSNRLWGEV-ETGSASTSKALDVCSRSYFEGFFDGHG
        EEFYPFLR+GSLAEVSKIQIF+KIQQLK EYLE KLELRKMR + +K      Y+D  DEGFELSN+LWGEV ET  AS SKAL+VCSR+Y+EGFF+  G
Subjt:  EEFYPFLRDGSLAEVSKIQIFNKIQQLKREYLEKKLELRKMRMQYLK------YDDDHDEGFELSNRLWGEV-ETGSASTSKALDVCSRSYFEGFFDGHG

Query:  LHIQLFTPSFLDATNKDIHHLFSLQNHHFLIKANLKAQLAQLKYDIIQARDFNNPTN
        L +QLF PSF DAT KDI HLF+L++H  L KA L AQ+ QLKYD+IQAR  NNPTN
Subjt:  LHIQLFTPSFLDATNKDIHHLFSLQNHHFLIKANLKAQLAQLKYDIIQARDFNNPTN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGACGAAGAATTTTATCCGTTTTTGAGAGATGGGTCATTGGCTGAGGTGTCCAAGATTCAAATATTCAACAAGATTCAACAACTCAAAAGGGAATATTTGGAGAA
GAAATTAGAGTTGAGAAAAATGAGAATGCAATATTTGAAATACGACGACGACCACGACGAGGGTTTTGAGTTATCAAATCGACTTTGGGGTGAAGTTGAAACCGGAAGTG
CTTCTACCTCTAAAGCATTGGATGTGTGTAGTAGGAGTTATTTTGAAGGCTTTTTTGATGGTCATGGGCTTCATATACAACTATTTACGCCATCTTTTCTCGATGCAACC
AACAAGGACATCCACCATTTGTTTTCTCTTCAAAATCATCATTTCTTAATCAAAGCTAACTTGAAGGCTCAACTTGCTCAACTAAAGTACGACATCATTCAAGCTCGTGA
TTTCAACAATCCTACCAATGATCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGACGAAGAATTTTATCCGTTTTTGAGAGATGGGTCATTGGCTGAGGTGTCCAAGATTCAAATATTCAACAAGATTCAACAACTCAAAAGGGAATATTTGGAGAA
GAAATTAGAGTTGAGAAAAATGAGAATGCAATATTTGAAATACGACGACGACCACGACGAGGGTTTTGAGTTATCAAATCGACTTTGGGGTGAAGTTGAAACCGGAAGTG
CTTCTACCTCTAAAGCATTGGATGTGTGTAGTAGGAGTTATTTTGAAGGCTTTTTTGATGGTCATGGGCTTCATATACAACTATTTACGCCATCTTTTCTCGATGCAACC
AACAAGGACATCCACCATTTGTTTTCTCTTCAAAATCATCATTTCTTAATCAAAGCTAACTTGAAGGCTCAACTTGCTCAACTAAAGTACGACATCATTCAAGCTCGTGA
TTTCAACAATCCTACCAATGATCAATAA
Protein sequenceShow/hide protein sequence
MADEEFYPFLRDGSLAEVSKIQIFNKIQQLKREYLEKKLELRKMRMQYLKYDDDHDEGFELSNRLWGEVETGSASTSKALDVCSRSYFEGFFDGHGLHIQLFTPSFLDAT
NKDIHHLFSLQNHHFLIKANLKAQLAQLKYDIIQARDFNNPTNDQ