; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi07G005380 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G005380
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMediator of RNA polymerase II transcription subunit 6
Genome locationchr07:5701301..5707703
RNA-Seq ExpressionLsi07G005380
SyntenyLsi07G005380
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0016592 - mediator complex (cellular component)
GO:0070847 - core mediator complex (cellular component)
GO:0003713 - transcription coactivator activity (molecular function)
InterPro domainsIPR007018 - Mediator complex, subunit Med6
IPR038566 - Mediator complex, subunit Med6 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149176.2 mediator of RNA polymerase II transcription subunit 6 [Cucumis sativus]1.8e-11978.72Show/hide
Query:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPPPPTAPPG GNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAKE
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLC+VFAARV R L    ++ +++ T    K       K+G          VDSENESEEVKPAKE
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAKE

Query:  TINFKEVKRVDHILASLQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF
        TINFKEVKRVDHILASLQRK                        LPPAPPPPPFPEGYAPA TAETEKGPENQQGESQQP ADPIIDQGPAKRMKF
Subjt:  TINFKEVKRVDHILASLQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF

XP_008447572.1 PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cucumis melo]5.1e-11978.45Show/hide
Query:  MATPPPP-TAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
        MATPPPP TAPPG GNFEGGP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
Subjt:  MATPPPP-TAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAK
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARV R L    ++ +++ T    K       K+G          VDSENESEEVKPAK
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAK

Query:  ETINFKEVKRVDHILASLQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF
        ETINFKEVKRVDHILASLQRK                        LPPAPPPPPFPEGYAPAPTA+TEKGPENQQGESQQP ADPIIDQGPAKRMKF
Subjt:  ETINFKEVKRVDHILASLQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF

XP_022148297.1 mediator of RNA polymerase II transcription subunit 6 [Momordica charantia]2.6e-11576.35Show/hide
Query:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPPPP APPGI NFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAKE
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARV R L    ++ +++ T    K       K+G          VDSENESEEVKP KE
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAKE

Query:  TINFKEVKRVDHILASLQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF
        TINFKEVKRVDHILASLQRK                        LPPAPPPPPFPEGY PAPTAE EKGPENQ  E QQP ADPIIDQGPAKRMKF
Subjt:  TINFKEVKRVDHILASLQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF

XP_023524903.1 mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pepo]2.3e-11175Show/hide
Query:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPP    PPGIGNFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAKE
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARV R L    ++ +++ T    K       K+G          VDSENESEEVKPAK 
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAKE

Query:  TINFKEVKRVDHILASLQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF
        TI+FKEVKRVD ILASLQRK                        LPPAPPPPPFPEGY PAP +E EKGPE+QQGE QQP ADPIIDQGPAKRMKF
Subjt:  TINFKEVKRVDHILASLQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF

XP_038896808.1 mediator of RNA polymerase II transcription subunit 6 [Benincasa hispida]1.6e-12079.05Show/hide
Query:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAKE
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARV R L    ++ +++ T    K       K+G          VDSENE EEVKPAKE
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAKE

Query:  TINFKEVKRVDHILASLQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF
        TINFKEVKRVDHILASLQRK                        LPPAPPPPPFPEGYAPAPTAETEKGPEN  GESQQPPADPIIDQGPAKRMKF
Subjt:  TINFKEVKRVDHILASLQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF

TrEMBL top hitse value%identityAlignment
A0A0A0L8C2 Mediator of RNA polymerase II transcription subunit 68.5e-12078.72Show/hide
Query:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPPPPTAPPG GNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAKE
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLC+VFAARV R L    ++ +++ T    K       K+G          VDSENESEEVKPAKE
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAKE

Query:  TINFKEVKRVDHILASLQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF
        TINFKEVKRVDHILASLQRK                        LPPAPPPPPFPEGYAPA TAETEKGPENQQGESQQP ADPIIDQGPAKRMKF
Subjt:  TINFKEVKRVDHILASLQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF

A0A1S3BHR9 Mediator of RNA polymerase II transcription subunit 62.5e-11978.45Show/hide
Query:  MATPPPP-TAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
        MATPPPP TAPPG GNFEGGP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
Subjt:  MATPPPP-TAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAK
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARV R L    ++ +++ T    K       K+G          VDSENESEEVKPAK
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAK

Query:  ETINFKEVKRVDHILASLQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF
        ETINFKEVKRVDHILASLQRK                        LPPAPPPPPFPEGYAPAPTA+TEKGPENQQGESQQP ADPIIDQGPAKRMKF
Subjt:  ETINFKEVKRVDHILASLQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF

A0A5D3CDR8 Mediator of RNA polymerase II transcription subunit 62.5e-11978.45Show/hide
Query:  MATPPPP-TAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
        MATPPPP TAPPG GNFEGGP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM
Subjt:  MATPPPP-TAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVM

Query:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAK
        EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARV R L    ++ +++ T    K       K+G          VDSENESEEVKPAK
Subjt:  EPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAK

Query:  ETINFKEVKRVDHILASLQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF
        ETINFKEVKRVDHILASLQRK                        LPPAPPPPPFPEGYAPAPTA+TEKGPENQQGESQQP ADPIIDQGPAKRMKF
Subjt:  ETINFKEVKRVDHILASLQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF

A0A6J1D4P7 Mediator of RNA polymerase II transcription subunit 61.3e-11576.35Show/hide
Query:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPPPP APPGI NFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAKE
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARV R L    ++ +++ T    K       K+G          VDSENESEEVKP KE
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAKE

Query:  TINFKEVKRVDHILASLQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF
        TINFKEVKRVDHILASLQRK                        LPPAPPPPPFPEGY PAPTAE EKGPENQ  E QQP ADPIIDQGPAKRMKF
Subjt:  TINFKEVKRVDHILASLQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF

A0A6J1G911 Mediator of RNA polymerase II transcription subunit 62.5e-11175Show/hide
Query:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
        MATPP    PPGIGNFEGGP  AAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME
Subjt:  MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVME

Query:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAKE
        PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARV R L    ++ +++ T    K       K+G          VDSENESEEVKPAKE
Subjt:  PHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAKE

Query:  TINFKEVKRVDHILASLQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF
        TI+FKEVKRVD ILASLQRK                        LPPAPPPPPFPEGY PAP +E EKGPE+QQGE QQP ADPIIDQGPAKRMKF
Subjt:  TINFKEVKRVDHILASLQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF

SwissProt top hitse value%identityAlignment
F4IXJ7 Mediator of RNA polymerase II transcription subunit 63.9e-7755.15Show/hide
Query:  LPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM
        +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTPM
Subjt:  LPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM

Query:  LTYYILDGSIYQAPQLCNVFAARVVRFL-TLSFHHTAESGTILHIK-GLYHCFLKV---------------------GEDRIWYLLAIVDSENESE--EV
        LTYYILDGSIYQAPQLC+VFAARV R +  +S   T  +  +  I+  L  C + +                     GE    +   + D+EN++E  E 
Subjt:  LTYYILDGSIYQAPQLCNVFAARVVRFL-TLSFHHTAESGTILHIK-GLYHCFLKV---------------------GEDRIWYLLAIVDSENESE--EV

Query:  KPAKETINFKEVKRVDHILASLQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMK
        KPA ET++ KE+KRVD IL SL RK                        L P PPPPPFPEGY        ++    Q GESQ P  DPIIDQGPAKRMK
Subjt:  KPAKETINFKEVKRVDHILASLQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMK

Query:  F
        F
Subjt:  F

Q3SZY9 Mediator of RNA polymerase II transcription subunit 61.8e-2133.85Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG
        ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M G+EY+L    EP LF+ RKQ+R  P +V P+  YYI+ G
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG

Query:  SIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAKETINFKEVKRVDHILASLQRK
         IYQAP L +V  +RV     L+  H  +S      + + +C     +   W+     + +    +VK  +E  +  + +RVD +L  L++K
Subjt:  SIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAKETINFKEVKRVDHILASLQRK

Q54PN3 Putative mediator of RNA polymerase II transcription subunit 62.9e-2436.51Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSI
        D+T + +RD LWL  YPL+   +  YF+ S FYD  CNNEQL+M+    LDLS L  M G+EY L + +EP  F+  KQ R  P  V     YY+++G+I
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSI

Query:  YQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLK-VGEDRIWYLLAIVDSENESEEVK-PAKETINFKEVKRVDHILASL
        YQAP+L  VF +RV             S +I H+   ++     V  D +      +D  N+ E+ K  A      ++ KR+D ++ SL
Subjt:  YQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLK-VGEDRIWYLLAIVDSENESEEVK-PAKETINFKEVKRVDHILASL

Q5RD94 Mediator of RNA polymerase II transcription subunit 63.9e-2133.85Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG
        ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG

Query:  SIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAKETINFKEVKRVDHILASLQRK
         IYQAP L +V  +RV     L+  H  +S      + + +C     +   W+     + +    + K  +E  +  + +RVD +L  L++K
Subjt:  SIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAKETINFKEVKRVDHILASLQRK

Q921D4 Mediator of RNA polymerase II transcription subunit 61.8e-2134.38Show/hide
Query:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG
        ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G
Subjt:  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDG

Query:  SIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAKETINFKEVKRVDHILASLQRK
         IYQAP L +V  +RV     L+  H  +S      + + +C     +   W+     + E    + K  +E  +  + +RVD +L  L++K
Subjt:  SIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAKETINFKEVKRVDHILASLQRK

Arabidopsis top hitse value%identityAlignment
AT3G21350.1 RNA polymerase transcriptional regulation mediator-related7.2e-7959.64Show/hide
Query:  LPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM
        +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTPM
Subjt:  LPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM

Query:  LTYYILDGSIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAI--VDSENESE--EVKPAKETINFKEVKRVDHILAS
        LTYYILDGSIYQAPQLC+VFAARV R             TI +I        K   D    L  I  VD+EN++E  E KPA ET++ KE+KRVD IL S
Subjt:  LTYYILDGSIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAI--VDSENESE--EVKPAKETINFKEVKRVDHILAS

Query:  LQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF
        L RK                        L P PPPPPFPEGY        ++    Q GESQ P  DPIIDQGPAKRMKF
Subjt:  LQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF

AT3G21350.2 RNA polymerase transcriptional regulation mediator-related2.7e-7855.15Show/hide
Query:  LPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM
        +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTPM
Subjt:  LPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM

Query:  LTYYILDGSIYQAPQLCNVFAARVVRFL-TLSFHHTAESGTILHIK-GLYHCFLKV---------------------GEDRIWYLLAIVDSENESE--EV
        LTYYILDGSIYQAPQLC+VFAARV R +  +S   T  +  +  I+  L  C + +                     GE    +   + D+EN++E  E 
Subjt:  LTYYILDGSIYQAPQLCNVFAARVVRFL-TLSFHHTAESGTILHIK-GLYHCFLKV---------------------GEDRIWYLLAIVDSENESE--EV

Query:  KPAKETINFKEVKRVDHILASLQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMK
        KPA ET++ KE+KRVD IL SL RK                        L P PPPPPFPEGY        ++    Q GESQ P  DPIIDQGPAKRMK
Subjt:  KPAKETINFKEVKRVDHILASLQRKKIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMK

Query:  F
        F
Subjt:  F


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACTCCACCACCACCGACGGCCCCGCCAGGGATCGGGAATTTTGAGGGGGGGCCGCTGCCGGCAGCGCCTCAGCCTCCAGGCACGGACATGACTGGAATTTGCTT
TAGAGACCAGCTCTGGCTCAATACTTACCCACTTGATCGAAACTTGGTTTTCGATTATTTCGCCTTGTCCCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAA
TGCGCTCCATTCACCCCCTCGATCTCTCTCAACTCTCAAAAATGACAGGTATAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTTTTCAGAAAGCAAAAG
AGGGATGGCCCTGAGAAAGTCACACCGATGCTGACTTATTATATCTTGGATGGTTCAATTTACCAGGCGCCTCAGCTTTGCAATGTTTTTGCTGCCCGAGTTGTGAGATT
TCTTACGTTGAGCTTTCATCATACTGCAGAGTCGGGCACTATATTACATATCAAAGGCCTTTACCACTGCTTCCTCAAAGTTGGAGAAGATAGGATATGGTATCTTCTAG
CTATTGTTGATTCTGAAAATGAGAGTGAAGAAGTAAAACCTGCAAAAGAAACCATTAACTTTAAGGAAGTAAAGCGAGTTGATCATATTCTTGCATCCTTACAGCGCAAG
AAAATTGTATTGTGTTTGTGTATATATTGCAAAGAGCTAGTTTATCAAGTGTCCTATTTTAAGAAGATAGTGCTGCCACCTGCCCCACCACCCCCACCATTTCCTGAAGG
CTATGCTCCTGCTCCCACAGCAGAAACAGAGAAAGGCCCTGAAAATCAACAAGGAGAGTCACAACAGCCTCCAGCAGATCCGATTATCGATCAGGGTCCAGCTAAAAGGA
TGAAATTTTGA
mRNA sequenceShow/hide mRNA sequence
TTTGGAGAGAGAAAAAACCATTTATGGGGTCATAAATAGGAAAAGAAAAAAAAGGAAGCGCTGTCTCCATCTTCTTCCCTCTCCATCAAACAGTTTTCCTCTCCGGCGAC
TCTCCAGCAGCCACAGGCGTAAGGCAGCGACGATGGAGCCTACACCCACGCGAACGCAGTCGACGATGGTCTACTTTCACTCGCGAATCTGACTTGCATTGTCAGCACGA
CTCCGAACGGCTTCGCCTAGGCTTTCGAAGCCTCGTTTCTTCTCCGTTTGAGACTCCAACGTGAACAACAAGTTGTGCATCACGTTTTGGACGACTGGATGTCTTGCAAC
AGCGTTTTTGACTTGGGAGTAAGCTTTCGACTGCTGCCCACACTTCGATTGGCTTCAAATCAATTTACCCATAAGGTTTAAGGTCCAGATCTGCAAGTTGGGAGATTTTC
AGACACCAACCAGCAAGGTTTAGAGCCTTTTCGGTAAATTTCTATGTATTCGATTAAGTTTCAGCAAGGTTGAACGCGGATTAGTGCAGACTTGATTAAAGTGTCTTAGA
TCAAACTTTGACTTGTGAAAGGCATCTAAAAGTTGACATTCGCTCAAGGAATGGATTTTTGGATTGAGAACTATAGGATTGTCAATTGAGACTCGTTGGAAAACAAATAA
AAAGGGGGAAGCCCTTTCACTAAGGGCGGAGGGATCTGTAAAATCCGATACTTTGTGGTCGGAGAAGTGAAATCTCACGCAAATGGCAACTCCACCACCACCGACGGCCC
CGCCAGGGATCGGGAATTTTGAGGGGGGGCCGCTGCCGGCAGCGCCTCAGCCTCCAGGCACGGACATGACTGGAATTTGCTTTAGAGACCAGCTCTGGCTCAATACTTAC
CCACTTGATCGAAACTTGGTTTTCGATTATTTCGCCTTGTCCCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAATGCGCTCCATTCACCCCCTCGATCTCTC
TCAACTCTCAAAAATGACAGGTATAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTTTTCAGAAAGCAAAAGAGGGATGGCCCTGAGAAAGTCACACCGA
TGCTGACTTATTATATCTTGGATGGTTCAATTTACCAGGCGCCTCAGCTTTGCAATGTTTTTGCTGCCCGAGTTGTGAGATTTCTTACGTTGAGCTTTCATCATACTGCA
GAGTCGGGCACTATATTACATATCAAAGGCCTTTACCACTGCTTCCTCAAAGTTGGAGAAGATAGGATATGGTATCTTCTAGCTATTGTTGATTCTGAAAATGAGAGTGA
AGAAGTAAAACCTGCAAAAGAAACCATTAACTTTAAGGAAGTAAAGCGAGTTGATCATATTCTTGCATCCTTACAGCGCAAGAAAATTGTATTGTGTTTGTGTATATATT
GCAAAGAGCTAGTTTATCAAGTGTCCTATTTTAAGAAGATAGTGCTGCCACCTGCCCCACCACCCCCACCATTTCCTGAAGGCTATGCTCCTGCTCCCACAGCAGAAACA
GAGAAAGGCCCTGAAAATCAACAAGGAGAGTCACAACAGCCTCCAGCAGATCCGATTATCGATCAGGGTCCAGCTAAAAGGATGAAATTTTGAAGAGTTTATGCTACCTT
CCCCATCTGAGTTGAGAAACCTATTTAAACCTGCAATTAAAATTCAACACGGATAACATGCCTGCACAAAGCATGGTGAGTTGTCAAACCCCCCGAAAAGTAGAATCAGC
CCTGTGAAAAGCCTGTAATTATAGACTTAGCTGCTTCAGAAGAAACACAATGCTGTGGACAAAGCAGGTGGCAGAATGAGAAAAACAGTGGTGAAGAGTTCATCTCATAT
GTTGTCTTTTCTTTCCTATGTCTAGTAGCATTGACAAATTGCAGAAATTATTCTCTGTTCTGTCTTGGGAGTTTTGTTACACCCAAGATTTTGAGATTTGGGCAATGTCC
GAAGAAAATGACAGTTTTTAGGGGAAGAAAATTATTTTTTGAAGATAGAAAGATATTTTCTTGGTTAAAATACCAATTTTGGTCAAGCGTTTTGTATTTTATTTCATTTC
ATTTTGGTCTAAATATTTTCAAATGTTCATTAAATCTTAAATGTAATCTTTGTATTTTTAATAAATCTTAATTAGAGTTATTTGTTTTGTGATAA
Protein sequenceShow/hide protein sequence
MATPPPPTAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQK
RDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVVRFLTLSFHHTAESGTILHIKGLYHCFLKVGEDRIWYLLAIVDSENESEEVKPAKETINFKEVKRVDHILASLQRK
KIVLCLCIYCKELVYQVSYFKKIVLPPAPPPPPFPEGYAPAPTAETEKGPENQQGESQQPPADPIIDQGPAKRMKF