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Lsi07G005390 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G005390
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPhotosystem II protein D1
Genome locationchr07:5708367..5711027
RNA-Seq ExpressionLsi07G005390
SyntenyLsi07G005390
Gene Ontology termsGO:0018298 - protein-chromophore linkage (biological process)
GO:0006351 - transcription, DNA-templated (biological process)
GO:0006412 - translation (biological process)
GO:0009635 - response to herbicide (biological process)
GO:0009772 - photosynthetic electron transport in photosystem II (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0016168 - chlorophyll binding (molecular function)
GO:0003723 - RNA binding (molecular function)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR038860 - Uncharacterized protein ycf72


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBG97133.1 hypothetical protein Prudu_006154 [Prunus dulcis]1.5e-3086.59Show/hide
Query:  HLDPALPKLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML
        H D    +LPSQHLDPALPKLFW TP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISF TAPAALANCP F SVISML
Subjt:  HLDPALPKLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML

KAF1855826.1 hypothetical protein Lal_00045189 [Lupinus albus]1.5e-3086.59Show/hide
Query:  HLDPALPKLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML
        H D    +LPSQHLDPALPKLFW TP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISF TAPAALANCP F SVISML
Subjt:  HLDPALPKLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML

KAF1876810.1 hypothetical protein Lal_00035372 [Lupinus albus]1.5e-3086.59Show/hide
Query:  HLDPALPKLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML
        H D    +LPSQHLDPALPKLFW TP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISF TAPAALANCP F SVISML
Subjt:  HLDPALPKLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML

KAG5070533.1 hypothetical protein JHK85_002910 [Glycine max]7.3e-3090.67Show/hide
Query:  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML
        +LPSQHLDPALPK FW TP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISF TAPAALANCP F SVISML
Subjt:  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML

KAG7012670.1 putative protein ycf72, partial [Cucurbita argyrosperma subsp. argyrosperma]5.1e-3187.8Show/hide
Query:  HLDPALPKLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML
        H D    +LPSQHLDPALPKLFW TPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISF TAPAALANCP F SVISML
Subjt:  HLDPALPKLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML

TrEMBL top hitse value%identityAlignment
A0A2K1YGV4 Uncharacterized protein ycf72 (Fragment)6.1e-3090.67Show/hide
Query:  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML
        +LPSQHLDP LPKLFW TPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISF TAPAALANCP   SVISML
Subjt:  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML

A0A2N9IB45 Uncharacterized protein6.1e-3090.67Show/hide
Query:  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML
        +LPSQHLDPALPKLFW TP  PTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISF TAPAALANCP F SVISML
Subjt:  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML

A0A4Y1QZ52 Uncharacterized protein ycf727.2e-3186.59Show/hide
Query:  HLDPALPKLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML
        H D    +LPSQHLDPALPKLFW TP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISF TAPAALANCP F SVISML
Subjt:  HLDPALPKLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML

A0A6A5MQL3 Uncharacterized protein ycf727.2e-3186.59Show/hide
Query:  HLDPALPKLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML
        H D    +LPSQHLDPALPKLFW TP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISF TAPAALANCP F SVISML
Subjt:  HLDPALPKLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML

A0A6A5N0B0 Uncharacterized protein ycf727.2e-3186.59Show/hide
Query:  HLDPALPKLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML
        H D    +LPSQHLDPALPKLFW TP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISF TAPAALANCP F SVISML
Subjt:  HLDPALPKLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML

SwissProt top hitse value%identityAlignment
P0C308 Uncharacterized protein ycf724.6e-2778.67Show/hide
Query:  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML
        +LPSQHLDPALPKLFW TP  PTCPTVA+QF D KRTSP+GN  VAD PSFAISF TAPAALANCP    VISML
Subjt:  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML

P0C309 Uncharacterized protein ycf724.6e-2778.67Show/hide
Query:  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML
        +LPSQHLDPALPKLFW TP  PTCPTVA+QF D KRTSP+GN  VAD PSFAISF TAPAALANCP    VISML
Subjt:  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML

Q36996 Uncharacterized protein ycf724.6e-2778.67Show/hide
Query:  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML
        +LPSQHLDPALPKLFW TP  PTCPTVA+QF D KRTSP+GN  VAD PSFAISF TAPAALANCP    VISML
Subjt:  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML

Q37082 Uncharacterized protein ycf721.8e-2677.33Show/hide
Query:  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML
        +LPSQHLDPALPKLFW TP  PTCPTVA+QF D KRTSP+GN  VA+ PSFAISF TAPAALANCP    VISML
Subjt:  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML

Q6ENC9 Uncharacterized protein ycf724.6e-2778.67Show/hide
Query:  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML
        +LPSQHLDPALPKLFW TP  PTCPTVA+QF D KRTSP+GN  VAD PSFAISF TAPAALANCP    VISML
Subjt:  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISML

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATCCTTAAATAATGTGGTGGTGATAGTTATGGAGCATGCCCTCTGTTATAGCTGTCTAATACACCATTATTATTATTGTTTCGTCTGCGGATCACGTCAAGAGCT
GGCTCTGGGTTTTGCGTTTACGGCACAACGACACTCCACCAACAATCGTAAAGGACGCTTACCTAGCCAACATTTAGATCCGGCTCTACCCAAACTACCTAGCCAACATT
TAGATCCGGCTCTACCCAAACTTTTCTGGGTTACCCCAGCATTCCCCACTTGTCCGACTGTTGCTGAGCAATTTTTGGATATCAAACGAACCTCCCCAGAAGGTAATTTT
AATGTGGCCGATTTCCCCTCTTTTGCAATCAGTTTTACTACAGCACCTGCTGCTCTAGCTAATTGTCCCCTCTTCTCAAGTGTGATTTCTATGTTATTGAGTATTTCAAA
AAGGAAATGGGAATACATTGTTATTGCGAGTATGGCTCTCACTCTTCCCATTGACGACGAGGACCATGTTTCTGTTGATATTATCGAGAATGCTTTGGCAATCAGTAATA
CGCCGATAATTGGCGACGACGATTCTCAAGTTTCCACTCATATTGGGAATGCTTTGGCTATCAATAATCTTCCTACCGACGGCCATCTGGTTTCTGTTGATATTATTCGA
TGA
mRNA sequenceShow/hide mRNA sequence
ATGAGATCCTTAAATAATGTGGTGGTGATAGTTATGGAGCATGCCCTCTGTTATAGCTGTCTAATACACCATTATTATTATTGTTTCGTCTGCGGATCACGTCAAGAGCT
GGCTCTGGGTTTTGCGTTTACGGCACAACGACACTCCACCAACAATCGTAAAGGACGCTTACCTAGCCAACATTTAGATCCGGCTCTACCCAAACTACCTAGCCAACATT
TAGATCCGGCTCTACCCAAACTTTTCTGGGTTACCCCAGCATTCCCCACTTGTCCGACTGTTGCTGAGCAATTTTTGGATATCAAACGAACCTCCCCAGAAGGTAATTTT
AATGTGGCCGATTTCCCCTCTTTTGCAATCAGTTTTACTACAGCACCTGCTGCTCTAGCTAATTGTCCCCTCTTCTCAAGTGTGATTTCTATGTTATTGAGTATTTCAAA
AAGGAAATGGGAATACATTGTTATTGCGAGTATGGCTCTCACTCTTCCCATTGACGACGAGGACCATGTTTCTGTTGATATTATCGAGAATGCTTTGGCAATCAGTAATA
CGCCGATAATTGGCGACGACGATTCTCAAGTTTCCACTCATATTGGGAATGCTTTGGCTATCAATAATCTTCCTACCGACGGCCATCTGGTTTCTGTTGATATTATTCGA
TGA
Protein sequenceShow/hide protein sequence
MRSLNNVVVIVMEHALCYSCLIHHYYYCFVCGSRQELALGFAFTAQRHSTNNRKGRLPSQHLDPALPKLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNF
NVADFPSFAISFTTAPAALANCPLFSSVISMLLSISKRKWEYIVIASMALTLPIDDEDHVSVDIIENALAISNTPIIGDDDSQVSTHIGNALAINNLPTDGHLVSVDIIR