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Lsi07G005660 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G005660
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRNase III domain-containing protein
Genome locationchr07:6019861..6020460
RNA-Seq ExpressionLsi07G005660
SyntenyLsi07G005660
Gene Ontology termsGO:0006396 - RNA processing (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0004525 - ribonuclease III activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051147.1 mini-ribonuclease 3 isoform X2 [Cucumis melo var. makuwa]6.2e-2792.11Show/hide
Query:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIE
        MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLS SPTSQ+TGNA LTATNIRT+QIV+DLLNRRN SSIE
Subjt:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIE

XP_004146824.1 uncharacterized protein LOC101205919 [Cucumis sativus]1.3e-2793.42Show/hide
Query:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIE
        MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKP S S SPTSQATGNA LTATNIRTNQIV+DLLNRRNPSSIE
Subjt:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIE

XP_008447605.1 PREDICTED: uncharacterized protein LOC103490018 [Cucumis melo]6.2e-2792.11Show/hide
Query:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIE
        MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLS SPTSQ+TGNA LTATNIRT+QIV+DLLNRRN SSIE
Subjt:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIE

XP_038881983.1 uncharacterized protein LOC120073279 isoform X1 [Benincasa hispida]6.7e-2991.25Show/hide
Query:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIEVSSV
        MVTLSATSTSIVASWDTQQRLSYNPNAP+NPNKKPNSLSLSPTSQ TGNA LTATNIRTNQIV+DLLNRRNPSSIE S +
Subjt:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIEVSSV

XP_038882062.1 uncharacterized protein LOC120073279 isoform X2 [Benincasa hispida]6.7e-2991.25Show/hide
Query:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIEVSSV
        MVTLSATSTSIVASWDTQQRLSYNPNAP+NPNKKPNSLSLSPTSQ TGNA LTATNIRTNQIV+DLLNRRNPSSIE S +
Subjt:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIEVSSV

TrEMBL top hitse value%identityAlignment
A0A0A0LDF2 RNase III domain-containing protein6.1e-2893.42Show/hide
Query:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIE
        MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKP S S SPTSQATGNA LTATNIRTNQIV+DLLNRRNPSSIE
Subjt:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIE

A0A1S3BIG3 uncharacterized protein LOC1034900183.0e-2792.11Show/hide
Query:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIE
        MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLS SPTSQ+TGNA LTATNIRT+QIV+DLLNRRN SSIE
Subjt:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIE

A0A5D3BY20 Mini-ribonuclease 3 isoform X23.0e-2792.11Show/hide
Query:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIE
        MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLS SPTSQ+TGNA LTATNIRT+QIV+DLLNRRN SSIE
Subjt:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIE

A0A6J1GYR2 uncharacterized protein LOC1114580659.1e-2482.05Show/hide
Query:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIEVS
        M TL+ATSTSIVASWDTQQRL+YNPNA RNPNKKP SLS+SPTSQ+TGNA LTATNIRTNQIV+DLL RR+P S E S
Subjt:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIEVS

A0A6J1J002 uncharacterized protein LOC1114799931.8e-2483.33Show/hide
Query:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIEVS
        M+TLSATSTSIVASWDTQQRL+YNPNAPRNPNKKP SLS+SPTSQ+TG A LTATNIRTNQIV+DLL RR+P S E S
Subjt:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIEVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G55140.1 Ribonuclease III family protein3.2e-0544.16Show/hide
Query:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIEV
        M  LSA+ST + A+ DTQ +L YNPNAPRN  K  N  S  P S  + ++   ATN+  +  V+DLL R  P+S ++
Subjt:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIEV

AT1G55140.2 Ribonuclease III family protein3.2e-0544.16Show/hide
Query:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIEV
        M  LSA+ST + A+ DTQ +L YNPNAPRN  K  N  S  P S  + ++   ATN+  +  V+DLL R  P+S ++
Subjt:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIEV

AT3G13740.1 Ribonuclease III family protein3.5e-0443.59Show/hide
Query:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIEVS
        MV LSA+ST + A+ DTQ RL YNPNAPR   K PN  S  P      +  ++ +       V DLL R  PSS E++
Subjt:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIEVS

AT3G13740.2 Ribonuclease III family protein3.5e-0443.59Show/hide
Query:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIEVS
        MV LSA+ST + A+ DTQ RL YNPNAPR   K PN  S  P      +  ++ +       V DLL R  PSS E++
Subjt:  MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIEVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAACTTTATCGGCGACTTCGACGAGCATCGTTGCTTCATGGGACACTCAACAAAGGCTTTCGTACAATCCCAATGCCCCAAGAAACCCCAACAAGAAACCCAATTC
TCTATCTCTTTCGCCGACCTCACAAGCCACCGGAAATGCTGCCTTAACCGCAACGAACATTCGAACCAACCAAATTGTTACCGACCTCCTCAACCGTCGCAATCCCAGCT
CAATTGAAGTTTCTTCTGTTAGGTTGATGGGAATGTTGGGAATTGTTAGTGGAATCGGGGTTTCCGTTGTGTTTTATGCATTGTGGTGTTGGGAAATGGTAGCTGAACTC
GATTTCTGGCCGGTTGTGAAATTCGTATGTACATCTCAGCTAATCTCACTGGACAATCTGTCTAATCCTATAACATTTGGATATTAA
mRNA sequenceShow/hide mRNA sequence
AAGGAGACAAAAATGGTAACTTTATCGGCGACTTCGACGAGCATCGTTGCTTCATGGGACACTCAACAAAGGCTTTCGTACAATCCCAATGCCCCAAGAAACCCCAACAA
GAAACCCAATTCTCTATCTCTTTCGCCGACCTCACAAGCCACCGGAAATGCTGCCTTAACCGCAACGAACATTCGAACCAACCAAATTGTTACCGACCTCCTCAACCGTC
GCAATCCCAGCTCAATTGAAGTTTCTTCTGTTAGGTTGATGGGAATGTTGGGAATTGTTAGTGGAATCGGGGTTTCCGTTGTGTTTTATGCATTGTGGTGTTGGGAAATG
GTAGCTGAACTCGATTTCTGGCCGGTTGTGAAATTCGTATGTACATCTCAGCTAATCTCACTGGACAATCTGTCTAATCCTATAACATTTGGATATTAA
Protein sequenceShow/hide protein sequence
MVTLSATSTSIVASWDTQQRLSYNPNAPRNPNKKPNSLSLSPTSQATGNAALTATNIRTNQIVTDLLNRRNPSSIEVSSVRLMGMLGIVSGIGVSVVFYALWCWEMVAEL
DFWPVVKFVCTSQLISLDNLSNPITFGY