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Lsi07G005970 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G005970
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibosomal protein L34
Genome locationchr07:6388842..6391799
RNA-Seq ExpressionLsi07G005970
SyntenyLsi07G005970
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000271 - Ribosomal protein L34
IPR020939 - Ribosomal protein L34, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1218405.1 hypothetical protein CJ030_MR3G026285 [Morella rubra]8.7e-1247.42Show/hide
Query:  GDVSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARKVGETSPHQNFLILTSWKTQLPSKEQSAITPLGAYCTAYKSNQGWTKSYCSKDCKGPIKNNCI
        GDVSS  EPMLLFPKRTFQPS IRRKRNHGFF+R                          SA +    Y    +SNQGW +S+CSK+ K P+K+N +
Subjt:  GDVSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARKVGETSPHQNFLILTSWKTQLPSKEQSAITPLGAYCTAYKSNQGWTKSYCSKDCKGPIKNNCI

KAG6727649.1 hypothetical protein I3842_02G136000 [Carya illinoinensis]6.9e-0991.43Show/hide
Query:  GDVSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARK
        GDVSS+ EPMLLFPKRTFQPS+IRRKRNHGFFARK
Subjt:  GDVSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARK

XP_034891203.1 uncharacterized protein LOC118031018 isoform X1 [Populus alba]9.0e-0940Show/hide
Query:  DVSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARKVGETSPHQNFLILTSWKTQLPSKEQSAITPLGAYCTAYKSNQGWTKSYCSKDCKGPIKNNCIMLIS
        D  S+ EPMLLFPKRT+QPSVIRRKR HGFFAR                                       K NQGW++S CS++ K P+K+ C+  +S
Subjt:  DVSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARKVGETSPHQNFLILTSWKTQLPSKEQSAITPLGAYCTAYKSNQGWTKSYCSKDCKGPIKNNCIMLIS

XP_038904887.1 uncharacterized protein LOC120091114 isoform X1 [Benincasa hispida]5.3e-0991.43Show/hide
Query:  GDVSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARK
        GD SST+EPMLLFPKRTFQPS+IRRKRNHGFFARK
Subjt:  GDVSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARK

XP_042967886.1 uncharacterized protein LOC122300943 [Carya illinoinensis]6.9e-0991.43Show/hide
Query:  GDVSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARK
        GDVSS+ EPMLLFPKRTFQPS+IRRKRNHGFFARK
Subjt:  GDVSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARK

TrEMBL top hitse value%identityAlignment
A0A2I4GXF2 uncharacterized protein LOC1090117325.7e-0991.43Show/hide
Query:  GDVSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARK
        GDVSS+ EPMLLFPKRTFQPS+IRRKRNHGFFARK
Subjt:  GDVSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARK

A0A2N9IPL0 Uncharacterized protein1.3e-1348.96Show/hide
Query:  GDVSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARKVGETSPHQNFLILTSWKTQLP--SKEQSAITPLGAYCTAYKSNQGWTKSYCSKDCKGPIKN
        GD SS+ EPM+LFPKRTFQPS IRRKRNHGFFAR                W T  P  S   +   P        + NQGW +SYCSK+ KGP++N
Subjt:  GDVSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARKVGETSPHQNFLILTSWKTQLP--SKEQSAITPLGAYCTAYKSNQGWTKSYCSKDCKGPIKN

A0A6A1W004 RNase H domain-containing protein4.2e-1247.42Show/hide
Query:  GDVSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARKVGETSPHQNFLILTSWKTQLPSKEQSAITPLGAYCTAYKSNQGWTKSYCSKDCKGPIKNNCI
        GDVSS  EPMLLFPKRTFQPS IRRKRNHGFF+R                          SA +    Y    +SNQGW +S+CSK+ K P+K+N +
Subjt:  GDVSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARKVGETSPHQNFLILTSWKTQLPSKEQSAITPLGAYCTAYKSNQGWTKSYCSKDCKGPIKNNCI

A0A6J1GTQ0 uncharacterized protein LOC111457406 isoform X25.7e-0991.43Show/hide
Query:  GDVSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARK
        GD SST+EPMLLFPKRTFQPS IRRKRNHGFFARK
Subjt:  GDVSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARK

A0A6J1IXD9 uncharacterized protein LOC111480019 isoform X25.7e-0991.43Show/hide
Query:  GDVSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARK
        GD SST+EPMLLFPKRTFQPS IRRKRNHGFFARK
Subjt:  GDVSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G13882.1 Ribosomal protein L345.1e-1079.41Show/hide
Query:  DVSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARK
        +V  + EP+LLFPKRTFQPS IRRKRNHGFFARK
Subjt:  DVSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARK

AT3G13882.2 Ribosomal protein L341.1e-0981.82Show/hide
Query:  VSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARK
        V  + EP+LLFPKRTFQPS IRRKRNHGFFARK
Subjt:  VSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGATGTTTCTTCGACTAAAGAACCAATGCTCTTATTTCCTAAAAGGACTTTTCAACCTAGCGTCATCAGGCGAAAAAGGAATCATGGATTTTTTGCCCGAAAGGT
GGGAGAGACTAGCCCACACCAAAATTTCCTCATCTTGACTTCGTGGAAGACCCAACTCCCAAGCAAAGAACAATCTGCTATAACGCCACTGGGGGCCTACTGCACAGCCT
ATAAAAGCAACCAAGGGTGGACGAAAAGTTATTGCTCGAAGGATTGCAAAGGGCCGATCAAGAATAACTGCATAATGCTCATCTCAAGTCAGAAAACAGTTTACTTTCGG
TTCATGGTGGCTGTTGATGCTGCAGAGCAAATAAACATAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGATGTTTCTTCGACTAAAGAACCAATGCTCTTATTTCCTAAAAGGACTTTTCAACCTAGCGTCATCAGGCGAAAAAGGAATCATGGATTTTTTGCCCGAAAGGT
GGGAGAGACTAGCCCACACCAAAATTTCCTCATCTTGACTTCGTGGAAGACCCAACTCCCAAGCAAAGAACAATCTGCTATAACGCCACTGGGGGCCTACTGCACAGCCT
ATAAAAGCAACCAAGGGTGGACGAAAAGTTATTGCTCGAAGGATTGCAAAGGGCCGATCAAGAATAACTGCATAATGCTCATCTCAAGTCAGAAAACAGTTTACTTTCGG
TTCATGGTGGCTGTTGATGCTGCAGAGCAAATAAACATAATTTAA
Protein sequenceShow/hide protein sequence
MGDVSSTKEPMLLFPKRTFQPSVIRRKRNHGFFARKVGETSPHQNFLILTSWKTQLPSKEQSAITPLGAYCTAYKSNQGWTKSYCSKDCKGPIKNNCIMLISSQKTVYFR
FMVAVDAAEQINII