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Lsi07G006210 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G006210
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionGlutamate--tRNA ligase
Genome locationchr07:6663909..6664250
RNA-Seq ExpressionLsi07G006210
SyntenyLsi07G006210
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058525.1 putative transmembrane protein [Cucumis melo var. makuwa]2.4e-4590.35Show/hide
Query:  MDSNYSAYTNQNSSQRPLAIVLALASAAVLSPLRSCETSWSSGFVLPLVLLGLIIAIKTSSSCSSTSRESAILPSD-PSWVLKIGSSSWGLAGILMMLIL
        MDSNY AY NQNSS RPLAIVLALASA  LSPLRS ETSWSSGFV+PLVLLGLIIAIKTSS CSSTSR+SAILPSD PSWVLKIGSSSWGLAGILMMLIL
Subjt:  MDSNYSAYTNQNSSQRPLAIVLALASAAVLSPLRSCETSWSSGFVLPLVLLGLIIAIKTSSSCSSTSRESAILPSD-PSWVLKIGSSSWGLAGILMMLIL

Query:  GLSWQNSVQEFLWR
        GLSWQ+SVQEFLWR
Subjt:  GLSWQNSVQEFLWR

KAE8637311.1 hypothetical protein CSA_023553, partial [Cucumis sativus]4.4e-4792.11Show/hide
Query:  MDSNYSAYTNQNSSQRPLAIVLALASAAVLSPLRSCETSWSSGFVLPLVLLGLIIAIKTSSSCSSTSRESAILPSD-PSWVLKIGSSSWGLAGILMMLIL
        MDSNYSAY NQNSSQRPLAI LALASA VLSPLRS ETSWSSGFV+PLVLLGLI+AIKTSSSCSSTSR+SAILPSD PSWVLKIGSSSWGLAGILMMLIL
Subjt:  MDSNYSAYTNQNSSQRPLAIVLALASAAVLSPLRSCETSWSSGFVLPLVLLGLIIAIKTSSSCSSTSRESAILPSD-PSWVLKIGSSSWGLAGILMMLIL

Query:  GLSWQNSVQEFLWR
        GLSWQ+SVQEFLWR
Subjt:  GLSWQNSVQEFLWR

KAF3958642.1 hypothetical protein CMV_016470 [Castanea mollissima]8.4e-3068.07Show/hide
Query:  YTNQNSSQRPLAIVLALASAAVLSPL--------RSCETSWSSGFVLPLVLLGLIIAIKTSSSCSSTSRE----SAILPS-DPSWVLKIGSSSWGLAGIL
        YT+Q SSQR +A+VLAL SA VLSPL        R  ET WSSGFVLP+VL GLIIAIKT+SSCSS S +    ++I+PS DPSWVL+IGSSSWGLAGIL
Subjt:  YTNQNSSQRPLAIVLALASAAVLSPL--------RSCETSWSSGFVLPLVLLGLIIAIKTSSSCSSTSRE----SAILPS-DPSWVLKIGSSSWGLAGIL

Query:  MMLILGLSWQNSVQEFLWR
        +ML+L LSWQ SVQEF WR
Subjt:  MMLILGLSWQNSVQEFLWR

KAG6581812.1 hypothetical protein SDJN03_21814, partial [Cucurbita argyrosperma subsp. sororia]2.8e-4183.05Show/hide
Query:  MDSNYSAYTNQNSSQRPLAIVLALASAAVLSPLRSCETSWSSGFVLPLVLLGLIIAIKTSSSCSSTS-----RESAILPSDPSWVLKIGSSSWGLAGILM
        MDSNY AYTNQ SSQRPLAIVLALASA VLSPLR  E+ WSSGFVLPLVLL LIIAIKTSSSCSS S     R+SAIL SDPSWVLKIGSSSWGLAG+LM
Subjt:  MDSNYSAYTNQNSSQRPLAIVLALASAAVLSPLRSCETSWSSGFVLPLVLLGLIIAIKTSSSCSSTS-----RESAILPSDPSWVLKIGSSSWGLAGILM

Query:  MLILGLSWQNSVQEFLWR
        MLI GLSWQ+SV+EFLWR
Subjt:  MLILGLSWQNSVQEFLWR

XP_030969466.1 uncharacterized protein LOC115989757 [Quercus lobata]8.4e-3068.64Show/hide
Query:  YTNQNSSQRPLAIVLALASAAVLSPL--------RSCETSWSSGFVLPLVLLGLIIAIKTSSSCSSTSRE---SAILPS-DPSWVLKIGSSSWGLAGILM
        YT+Q SSQR +A+VLAL SA VLSPL        R  ET WSSGFVLP+VL GLIIAIKT+SSCSS S +   ++I+PS DPSWVL+IGSSSWGLAGIL+
Subjt:  YTNQNSSQRPLAIVLALASAAVLSPL--------RSCETSWSSGFVLPLVLLGLIIAIKTSSSCSSTSRE---SAILPS-DPSWVLKIGSSSWGLAGILM

Query:  MLILGLSWQNSVQEFLWR
        ML+L LSWQ SVQEF WR
Subjt:  MLILGLSWQNSVQEFLWR

TrEMBL top hitse value%identityAlignment
A0A067KX22 Uncharacterized protein9.1e-3066.95Show/hide
Query:  YSAYTNQNSSQRPLAIVLALASAAVLSP---------LRSCETSWSSGFVLPLVLLGLIIAIKTSSSCSSTSRESAILPSDPSWVLKIGSSSWGLAGILM
        Y+ Y++QNSSQR LA+VLAL SA VLSP         LR  ET WSSGFVLP+VL GLIIAI+T+S+ S   RES I   DPSWVL+IGSSSWGLAGIL+
Subjt:  YSAYTNQNSSQRPLAIVLALASAAVLSP---------LRSCETSWSSGFVLPLVLLGLIIAIKTSSSCSSTSRESAILPSDPSWVLKIGSSSWGLAGILM

Query:  MLILGLSWQNSVQEFLWR
        ML+L LSWQ SVQEF WR
Subjt:  MLILGLSWQNSVQEFLWR

A0A0A0LEN3 Uncharacterized protein2.1e-4792.11Show/hide
Query:  MDSNYSAYTNQNSSQRPLAIVLALASAAVLSPLRSCETSWSSGFVLPLVLLGLIIAIKTSSSCSSTSRESAILPSD-PSWVLKIGSSSWGLAGILMMLIL
        MDSNYSAY NQNSSQRPLAI LALASA VLSPLRS ETSWSSGFV+PLVLLGLI+AIKTSSSCSSTSR+SAILPSD PSWVLKIGSSSWGLAGILMMLIL
Subjt:  MDSNYSAYTNQNSSQRPLAIVLALASAAVLSPLRSCETSWSSGFVLPLVLLGLIIAIKTSSSCSSTSRESAILPSD-PSWVLKIGSSSWGLAGILMMLIL

Query:  GLSWQNSVQEFLWR
        GLSWQ+SVQEFLWR
Subjt:  GLSWQNSVQEFLWR

A0A2N9IBH6 Uncharacterized protein1.0e-2865.55Show/hide
Query:  YTNQNSSQRPLAIVLALASAAVLSPLRS--------CETSWSSGFVLPLVLLGLIIAIKTSSSCSSTSRE----SAILPS-DPSWVLKIGSSSWGLAGIL
        YT Q SSQR +A+VL+L SA VLSPL +         ET WSSGFVLP+VL+GLIIAI+T+SSCSS S +    ++I+PS DPSWVL+IGSSSWGLAGIL
Subjt:  YTNQNSSQRPLAIVLALASAAVLSPLRS--------CETSWSSGFVLPLVLLGLIIAIKTSSSCSSTSRE----SAILPS-DPSWVLKIGSSSWGLAGIL

Query:  MMLILGLSWQNSVQEFLWR
        +ML+L LSWQ SVQEF WR
Subjt:  MMLILGLSWQNSVQEFLWR

A0A5A7UY99 Putative transmembrane protein1.2e-4590.35Show/hide
Query:  MDSNYSAYTNQNSSQRPLAIVLALASAAVLSPLRSCETSWSSGFVLPLVLLGLIIAIKTSSSCSSTSRESAILPSD-PSWVLKIGSSSWGLAGILMMLIL
        MDSNY AY NQNSS RPLAIVLALASA  LSPLRS ETSWSSGFV+PLVLLGLIIAIKTSS CSSTSR+SAILPSD PSWVLKIGSSSWGLAGILMMLIL
Subjt:  MDSNYSAYTNQNSSQRPLAIVLALASAAVLSPLRSCETSWSSGFVLPLVLLGLIIAIKTSSSCSSTSRESAILPSD-PSWVLKIGSSSWGLAGILMMLIL

Query:  GLSWQNSVQEFLWR
        GLSWQ+SVQEFLWR
Subjt:  GLSWQNSVQEFLWR

A0A7N2LMQ6 Uncharacterized protein4.1e-3068.64Show/hide
Query:  YTNQNSSQRPLAIVLALASAAVLSPL--------RSCETSWSSGFVLPLVLLGLIIAIKTSSSCSSTSRE---SAILPS-DPSWVLKIGSSSWGLAGILM
        YT+Q SSQR +A+VLAL SA VLSPL        R  ET WSSGFVLP+VL GLIIAIKT+SSCSS S +   ++I+PS DPSWVL+IGSSSWGLAGIL+
Subjt:  YTNQNSSQRPLAIVLALASAAVLSPL--------RSCETSWSSGFVLPLVLLGLIIAIKTSSSCSSTSRE---SAILPS-DPSWVLKIGSSSWGLAGILM

Query:  MLILGLSWQNSVQEFLWR
        ML+L LSWQ SVQEF WR
Subjt:  MLILGLSWQNSVQEFLWR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGTAACTATAGCGCTTATACGAACCAAAACTCGTCTCAAAGACCGCTGGCCATTGTTTTGGCTCTTGCTTCTGCAGCGGTGCTTTCGCCATTAAGATCCTGTGA
AACCAGTTGGAGCTCTGGATTTGTTCTTCCACTGGTTCTTTTGGGGCTTATAATTGCCATTAAGACATCATCGTCTTGCTCATCCACGTCCAGAGAATCTGCAATTCTCC
CTTCAGATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCTTGGGGCCTTGCAGGGATTTTAATGATGTTGATTCTTGGGCTTTCTTGGCAAAATTCTGTTCAAGAATTC
CTCTGGAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATAGTAACTATAGCGCTTATACGAACCAAAACTCGTCTCAAAGACCGCTGGCCATTGTTTTGGCTCTTGCTTCTGCAGCGGTGCTTTCGCCATTAAGATCCTGTGA
AACCAGTTGGAGCTCTGGATTTGTTCTTCCACTGGTTCTTTTGGGGCTTATAATTGCCATTAAGACATCATCGTCTTGCTCATCCACGTCCAGAGAATCTGCAATTCTCC
CTTCAGATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCTTGGGGCCTTGCAGGGATTTTAATGATGTTGATTCTTGGGCTTTCTTGGCAAAATTCTGTTCAAGAATTC
CTCTGGAGATAG
Protein sequenceShow/hide protein sequence
MDSNYSAYTNQNSSQRPLAIVLALASAAVLSPLRSCETSWSSGFVLPLVLLGLIIAIKTSSSCSSTSRESAILPSDPSWVLKIGSSSWGLAGILMMLILGLSWQNSVQEF
LWR