; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi07G006630 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G006630
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionsm-like protein LSM1B
Genome locationchr07:7106495..7111314
RNA-Seq ExpressionLsi07G006630
SyntenyLsi07G006630
Gene Ontology termsGO:0009605 - response to external stimulus (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053495.1 uncharacterized protein E6C27_scaffold190G00460 [Cucumis melo var. makuwa]3.8e-3660.22Show/hide
Query:  QLLSWMQSKLQGKVKFQNKASH--SNPS-IEQP-EETSPSLPLGLLAIGTFGNNNTNVLKVLKTDAENGVVDYGQSPLKETDDD-DGSL-----LEEELR
        +LLSWMQSKLQGKVKFQNK S+  SNPS IEQP EE+S SLPLGLLAIGTFG NNTN +KVLKTD EN V+D  +S   ETDDD D SL     LEEEL 
Subjt:  QLLSWMQSKLQGKVKFQNKASH--SNPS-IEQP-EETSPSLPLGLLAIGTFGNNNTNVLKVLKTDAENGVVDYGQSPLKETDDD-DGSL-----LEEELR

Query:  ELWQQNSQVLGKEETDDFDNDETQEQGVKKNIGLVIREWKDDYDD---------EKSIFYLGDYLDRPNSCFSFPPPPPPP
        +LWQQNSQ   +EE+DDFD+D+T+EQ VKKNIGLV+REW+ D +          ++S+ +L   +    S F+  PP PPP
Subjt:  ELWQQNSQVLGKEETDDFDNDETQEQGVKKNIGLVIREWKDDYDD---------EKSIFYLGDYLDRPNSCFSFPPPPPPP

KAG6581771.1 Sm-like protein LSM1B, partial [Cucurbita argyrosperma subsp. sororia]2.2e-3644.4Show/hide
Query:  MQS-KLQGKVKFQNKASHSNPSIEQPEETSPSLPLGLLAIGTFGNNNTNVLKVLKTDAENGVVDYGQSPLKETDDDDGSLLEEELRELWQQNSQVLGKEE
        MQS KL G+VKFQNK+S+SNPSIEQPEETSPSLPLGLLAIGTFGN   NVL+  KTD EN VVD  +SP KE +D        ELRE+  +  + +G   
Subjt:  MQS-KLQGKVKFQNKASHSNPSIEQPEETSPSLPLGLLAIGTFGNNNTNVLKVLKTDAENGVVDYGQSPLKETDDDDGSLLEEELRELWQQNSQVLGKEE

Query:  TDDFDNDETQEQGVKKNIGLVIREWKDDYDDEKSIFYLGDYLDRPNSCFSFPPPPPPPPSSSSNFP--------------CYRQITGSTVLDSAFERIVV
         D  D     +  VK+++  ++          K +F  G       S F+    PPPPP +  + P               Y  +T + V++SAFERIV 
Subjt:  TDDFDNDETQEQGVKKNIGLVIREWKDDYDDEKSIFYLGDYLDRPNSCFSFPPPPPPPPSSSSNFP--------------CYRQITGSTVLDSAFERIVV

Query:  ENQYCDNPIGPQLA---------------PQLPPHMTTVSLPQILTNERTLTVTLKAEKESLELKRTLQRWMEELLE
        ENQYCD P+G  +                P+LPPH+T VSLPQIL       +  KAE ES  LKRTL++WMEELL+
Subjt:  ENQYCDNPIGPQLA---------------PQLPPHMTTVSLPQILTNERTLTVTLKAEKESLELKRTLQRWMEELLE

KGN58611.2 hypothetical protein Csa_001406 [Cucumis sativus]1.1e-3559.12Show/hide
Query:  QLLSWMQSKLQGKVKFQNKASH--SNPS-IEQP-EETSPSLPLGLLAIGTFGNNNTNVLKVLKTDAENGVVDYGQSPLKETDDD-DGSL-----LEEELR
        +LLSWMQSKLQGKVKFQNK S+  SNPS IEQP EE+S SLPLGLLAIGTFG NN N LKV+KTD EN ++D  +S L ETDDD DGSL     LEEEL 
Subjt:  QLLSWMQSKLQGKVKFQNKASH--SNPS-IEQP-EETSPSLPLGLLAIGTFGNNNTNVLKVLKTDAENGVVDYGQSPLKETDDD-DGSL-----LEEELR

Query:  ELWQQNSQVLGKEETDDFDNDETQEQGVKKNIGLVIREWKDDYDD---------EKSIFYLGDYLDRPNSCFSFPPPPPPP
        +LWQQNS  L +EE+DDFD+D+ +EQ VKKN+GLV+REW+ D +          ++S+ +L   +    S F+  PP PPP
Subjt:  ELWQQNSQVLGKEETDDFDNDETQEQGVKKNIGLVIREWKDDYDD---------EKSIFYLGDYLDRPNSCFSFPPPPPPP

XP_008460313.1 PREDICTED: uncharacterized protein LOC103499172 [Cucumis melo]3.8e-3660.22Show/hide
Query:  QLLSWMQSKLQGKVKFQNKASH--SNPS-IEQP-EETSPSLPLGLLAIGTFGNNNTNVLKVLKTDAENGVVDYGQSPLKETDDD-DGSL-----LEEELR
        +LLSWMQSKLQGKVKFQNK S+  SNPS IEQP EE+S SLPLGLLAIGTFG NNTN +KVLKTD EN V+D  +S   ETDDD D SL     LEEEL 
Subjt:  QLLSWMQSKLQGKVKFQNKASH--SNPS-IEQP-EETSPSLPLGLLAIGTFGNNNTNVLKVLKTDAENGVVDYGQSPLKETDDD-DGSL-----LEEELR

Query:  ELWQQNSQVLGKEETDDFDNDETQEQGVKKNIGLVIREWKDDYDD---------EKSIFYLGDYLDRPNSCFSFPPPPPPP
        +LWQQNSQ   +EE+DDFD+D+T+EQ VKKNIGLV+REW+ D +          ++S+ +L   +    S F+  PP PPP
Subjt:  ELWQQNSQVLGKEETDDFDNDETQEQGVKKNIGLVIREWKDDYDD---------EKSIFYLGDYLDRPNSCFSFPPPPPPP

XP_038889127.1 protein NEGATIVE GRAVITROPIC RESPONSE OF ROOTS-like [Benincasa hispida]6.0e-4264.43Show/hide
Query:  QLLSWMQSKLQGKVKFQNKASHSNPSIEQPEETSPSLPLGLLAIGTFGNNNTNVLKVLK-TDAENGVVDYGQSPLKETDDDDGSL-----LEEELRELWQ
        +LLSWMQSKLQGKVKFQNK SHSN SIEQ EETSP LPLGLLAIGTFGNN  NVL VLK TDAEN VVD  +SP KET+D+ GSL     LEEELRELWQ
Subjt:  QLLSWMQSKLQGKVKFQNKASHSNPSIEQPEETSPSLPLGLLAIGTFGNNNTNVLKVLK-TDAENGVVDYGQSPLKETDDDDGSL-----LEEELRELWQ

Query:  QNSQVLGKEETDDFDNDETQEQGVKKNIG-LVIREWKDDYDDEKS-----------------IFYLGDYLDRPNSCFSFPPPPPPPPSSSSNFP
        QN+Q LG+EETDDFDND+T+EQGVKKNIG LVI EWKD  DDEKS                 IF  G           F P PP PP S  + P
Subjt:  QNSQVLGKEETDDFDNDETQEQGVKKNIG-LVIREWKDDYDDEKS-----------------IFYLGDYLDRPNSCFSFPPPPPPPPSSSSNFP

TrEMBL top hitse value%identityAlignment
A0A0A0L9D5 Uncharacterized protein3.1e-2845.45Show/hide
Query:  MQSKLQGKVKFQNKASHSN-----------------------------------------------PSIEQP-EETSPSLPLGLLAIGTFGNNNTNVLKV
        MQSKLQGKVKFQNK S+++                                               P+IEQP EE+S SLPLGLLAIGTFG NN N LKV
Subjt:  MQSKLQGKVKFQNKASHSN-----------------------------------------------PSIEQP-EETSPSLPLGLLAIGTFGNNNTNVLKV

Query:  LKTDAENGVVDYGQSPLKETDDD-DGSL-----LEEELRELWQQNSQVLGKEETDDFDNDETQEQGVKKNIGLVIREWKDDYDD---------EKSIFYL
        +KTD EN ++D  +S L ETDDD DGSL     LEEEL +LWQQNS  L +EE+DDFD+D+ +EQ VKKN+GLV+REW+ D +          ++S+ +L
Subjt:  LKTDAENGVVDYGQSPLKETDDD-DGSL-----LEEELRELWQQNSQVLGKEETDDFDNDETQEQGVKKNIGLVIREWKDDYDD---------EKSIFYL

Query:  GDYLDRPNSCFSFPPPPPPP
           +    S F+  PP PPP
Subjt:  GDYLDRPNSCFSFPPPPPPP

A0A1S3CCN5 uncharacterized protein LOC1034991721.8e-3660.22Show/hide
Query:  QLLSWMQSKLQGKVKFQNKASH--SNPS-IEQP-EETSPSLPLGLLAIGTFGNNNTNVLKVLKTDAENGVVDYGQSPLKETDDD-DGSL-----LEEELR
        +LLSWMQSKLQGKVKFQNK S+  SNPS IEQP EE+S SLPLGLLAIGTFG NNTN +KVLKTD EN V+D  +S   ETDDD D SL     LEEEL 
Subjt:  QLLSWMQSKLQGKVKFQNKASH--SNPS-IEQP-EETSPSLPLGLLAIGTFGNNNTNVLKVLKTDAENGVVDYGQSPLKETDDD-DGSL-----LEEELR

Query:  ELWQQNSQVLGKEETDDFDNDETQEQGVKKNIGLVIREWKDDYDD---------EKSIFYLGDYLDRPNSCFSFPPPPPPP
        +LWQQNSQ   +EE+DDFD+D+T+EQ VKKNIGLV+REW+ D +          ++S+ +L   +    S F+  PP PPP
Subjt:  ELWQQNSQVLGKEETDDFDNDETQEQGVKKNIGLVIREWKDDYDD---------EKSIFYLGDYLDRPNSCFSFPPPPPPP

A0A5A7UIH7 Uncharacterized protein1.8e-3660.22Show/hide
Query:  QLLSWMQSKLQGKVKFQNKASH--SNPS-IEQP-EETSPSLPLGLLAIGTFGNNNTNVLKVLKTDAENGVVDYGQSPLKETDDD-DGSL-----LEEELR
        +LLSWMQSKLQGKVKFQNK S+  SNPS IEQP EE+S SLPLGLLAIGTFG NNTN +KVLKTD EN V+D  +S   ETDDD D SL     LEEEL 
Subjt:  QLLSWMQSKLQGKVKFQNKASH--SNPS-IEQP-EETSPSLPLGLLAIGTFGNNNTNVLKVLKTDAENGVVDYGQSPLKETDDD-DGSL-----LEEELR

Query:  ELWQQNSQVLGKEETDDFDNDETQEQGVKKNIGLVIREWKDDYDD---------EKSIFYLGDYLDRPNSCFSFPPPPPPP
        +LWQQNSQ   +EE+DDFD+D+T+EQ VKKNIGLV+REW+ D +          ++S+ +L   +    S F+  PP PPP
Subjt:  ELWQQNSQVLGKEETDDFDNDETQEQGVKKNIGLVIREWKDDYDD---------EKSIFYLGDYLDRPNSCFSFPPPPPPP

A0A6J1GV88 uncharacterized protein LOC1114577869.1e-2047.85Show/hide
Query:  QLLSWMQS-KLQGKVKFQNKASHSNPSIEQPEETSPSLPLGLLAIGTFGNNNTNVLKVLKTDAENGVVDYGQSPLKETDDDDGSLLEEELRELWQQNSQV
        + LSWMQS KL G+VKFQNK+S+SNPSIEQPEETSPSLPLGLLAIGTFGN   NVL+  KTD EN VVD  +SP KE +D        ELRE+  +  + 
Subjt:  QLLSWMQS-KLQGKVKFQNKASHSNPSIEQPEETSPSLPLGLLAIGTFGNNNTNVLKVLKTDAENGVVDYGQSPLKETDDDDGSLLEEELRELWQQNSQV

Query:  LGKEETDDFDNDETQEQGVKKNIGLVIREWKDDYDDEKSIFYLGDYLDRPNSCFSFPPPPPPP
        +G    D  D     +  V++++  +I          K +F  G           F PPPPPP
Subjt:  LGKEETDDFDNDETQEQGVKKNIGLVIREWKDDYDDEKSIFYLGDYLDRPNSCFSFPPPPPPP

A0A6J1IUE0 uncharacterized protein LOC1114800095.9e-1947.85Show/hide
Query:  QLLSWMQS-KLQGKVKFQNKASHSNPSIEQPEETSPSLPLGLLAIGTFGNNNTNVLKVLKTDAENGVVDYGQSPLKETDDDDGSLLEEELRELWQQNSQV
        + LSWMQS KL GKVKFQNK+S+SNPSIEQPEETSPSLPLGLLAIGTFGN   NVL+  KTD EN VVD  +S  KET+D        ELRE+  +  + 
Subjt:  QLLSWMQS-KLQGKVKFQNKASHSNPSIEQPEETSPSLPLGLLAIGTFGNNNTNVLKVLKTDAENGVVDYGQSPLKETDDDDGSLLEEELRELWQQNSQV

Query:  LGKEETDDFDNDETQEQGVKKNIGLVIREWKDDYDDEKSIFYLGDYLDRPNSCFSFPPPPPPP
        +G    DD  N+   +  V++++  ++          K +F  G           F PPP PP
Subjt:  LGKEETDDFDNDETQEQGVKKNIGLVIREWKDDYDDEKSIFYLGDYLDRPNSCFSFPPPPPPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G72490.1 unknown protein6.9e-0430Show/hide
Query:  QLLSWMQSKLQGKVKFQNKASHSNPSIEQPEETSPSLPLGLLAIGTFGNN----NTNVLKVLKTDAENGVVDYGQ------SPLKETDDDDGSLLEEELR
        +   WMQ+KL GK +  ++ S S+ S   P E     P GLLAIGTFGN      T   +V++ +  + +   G+        L  +DD +     EE+ 
Subjt:  QLLSWMQSKLQGKVKFQNKASHSNPSIEQPEETSPSLPLGLLAIGTFGNN----NTNVLKVLKTDAENGVVDYGQ------SPLKETDDDDGSLLEEELR

Query:  ELWQQNSQVL
        +L ++ +++L
Subjt:  ELWQQNSQVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCTCAAATATTCATGCATTAATTCCTTGTTAGCTTTTCAATTGTTGAGTTGGATGCAAAGTAAACTCCAAGGAAAAGTAAAATTTCAGAACAAAGCATCACATTC
AAACCCTTCAATTGAGCAACCTGAAGAAACCAGCCCTTCTTTGCCTCTTGGATTACTAGCAATTGGAACTTTTGGCAACAATAATACTAATGTGTTGAAAGTATTGAAGA
CCGATGCCGAAAACGGTGTCGTCGACTATGGTCAATCTCCATTGAAAGAAACCGACGACGACGACGGTTCTCTTCTTGAAGAGGAGTTGAGGGAACTTTGGCAGCAAAAC
TCTCAAGTACTTGGTAAAGAGGAGACTGATGATTTTGATAACGATGAAACACAAGAACAAGGTGTGAAAAAGAACATTGGTTTAGTGATTAGGGAATGGAAAGATGATTA
TGATGATGAGAAAAGCATCTTCTATCTTGGCGATTATCTTGACCGACCAAATTCTTGCTTTTCTTTCCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTCTTCTAATTTCC
CATGCTACAGGCAAATTACTGGGAGTACTGTTCTTGATAGTGCTTTTGAAAGAATTGTTGTTGAGAATCAGTATTGTGATAACCCCATTGGACCCCAGCTTGCCCCCCAA
CTTCCTCCACATATGACTACTGTCTCACTCCCTCAGATTCTAACTAATGAAAGAACACTCACAGTAACTTTAAAAGCAGAAAAGGAGTCATTAGAGCTTAAAAGAACCTT
GCAGAGATGGATGGAGGAGCTCCTTGAAGATATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCTCAAATATTCATGCATTAATTCCTTGTTAGCTTTTCAATTGTTGAGTTGGATGCAAAGTAAACTCCAAGGAAAAGTAAAATTTCAGAACAAAGCATCACATTC
AAACCCTTCAATTGAGCAACCTGAAGAAACCAGCCCTTCTTTGCCTCTTGGATTACTAGCAATTGGAACTTTTGGCAACAATAATACTAATGTGTTGAAAGTATTGAAGA
CCGATGCCGAAAACGGTGTCGTCGACTATGGTCAATCTCCATTGAAAGAAACCGACGACGACGACGGTTCTCTTCTTGAAGAGGAGTTGAGGGAACTTTGGCAGCAAAAC
TCTCAAGTACTTGGTAAAGAGGAGACTGATGATTTTGATAACGATGAAACACAAGAACAAGGTGTGAAAAAGAACATTGGTTTAGTGATTAGGGAATGGAAAGATGATTA
TGATGATGAGAAAAGCATCTTCTATCTTGGCGATTATCTTGACCGACCAAATTCTTGCTTTTCTTTCCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTCTTCTAATTTCC
CATGCTACAGGCAAATTACTGGGAGTACTGTTCTTGATAGTGCTTTTGAAAGAATTGTTGTTGAGAATCAGTATTGTGATAACCCCATTGGACCCCAGCTTGCCCCCCAA
CTTCCTCCACATATGACTACTGTCTCACTCCCTCAGATTCTAACTAATGAAAGAACACTCACAGTAACTTTAAAAGCAGAAAAGGAGTCATTAGAGCTTAAAAGAACCTT
GCAGAGATGGATGGAGGAGCTCCTTGAAGATATGTGA
Protein sequenceShow/hide protein sequence
MSLKYSCINSLLAFQLLSWMQSKLQGKVKFQNKASHSNPSIEQPEETSPSLPLGLLAIGTFGNNNTNVLKVLKTDAENGVVDYGQSPLKETDDDDGSLLEEELRELWQQN
SQVLGKEETDDFDNDETQEQGVKKNIGLVIREWKDDYDDEKSIFYLGDYLDRPNSCFSFPPPPPPPPSSSSNFPCYRQITGSTVLDSAFERIVVENQYCDNPIGPQLAPQ
LPPHMTTVSLPQILTNERTLTVTLKAEKESLELKRTLQRWMEELLEDM