; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi07G007860 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G007860
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr07:8640073..8640768
RNA-Seq ExpressionLsi07G007860
SyntenyLsi07G007860
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045000.1 uncharacterized protein E6C27_scaffold74G003100 [Cucumis melo var. makuwa]1.1e-8973.01Show/hide
Query:  MLQSEEVVSTVKTNNNHPVATEPAVNMGNVYDEMCNLLTEMRIIAAKKTNEEHNNKINHFFVCEPPCFGEDTDPLVAKQWVLKLEKFFDLIDCSDKQKVS
        M Q EEVVSTVKT NNH VA EP+VN+GNVYDE+CNL++E+RIIAAK+T+EE +NK + FF CEPP FGEDTDPLVA++W+L LE  FDLI CSDKQKVS
Subjt:  MLQSEEVVSTVKTNNNHPVATEPAVNMGNVYDEMCNLLTEMRIIAAKKTNEEHNNKINHFFVCEPPCFGEDTDPLVAKQWVLKLEKFFDLIDCSDKQKVS

Query:  FASLRLNDAALSWWIVSRRQLDADGVPVTWEKFKELFEKRYLPQWLIYEKYRELCSLEQGDRTVTEYDEQFIRLSSLVSECIPDEAWKAHLFDNGLRADI
        FASLRL DAA SWW+V    L+ADGV VTWEK KELFEKRYLP+WL  EK+RELC+LEQGD TV EYDEQFI+L+SL  E IPDEAW+A LF +GLRADI
Subjt:  FASLRLNDAALSWWIVSRRQLDADGVPVTWEKFKELFEKRYLPQWLIYEKYRELCSLEQGDRTVTEYDEQFIRLSSLVSECIPDEAWKAHLFDNGLRADI

Query:  RLLLCFVNNVSYPELRNLALMAEQRL
        R  +CF NNVSY E+RNLALM EQR+
Subjt:  RLLLCFVNNVSYPELRNLALMAEQRL

TYK16471.1 uncharacterized protein E5676_scaffold21G002740 [Cucumis melo var. makuwa]2.3e-9073.45Show/hide
Query:  MLQSEEVVSTVKTNNNHPVATEPAVNMGNVYDEMCNLLTEMRIIAAKKTNEEHNNKINHFFVCEPPCFGEDTDPLVAKQWVLKLEKFFDLIDCSDKQKVS
        M Q EEVVSTVKT NNH VA EP+VN+GNVYDE+CNL++E+RIIAAK+T+EE +NK + FF CEPP FGEDTDPLVA++W+L LE  FDLI CSDKQKVS
Subjt:  MLQSEEVVSTVKTNNNHPVATEPAVNMGNVYDEMCNLLTEMRIIAAKKTNEEHNNKINHFFVCEPPCFGEDTDPLVAKQWVLKLEKFFDLIDCSDKQKVS

Query:  FASLRLNDAALSWWIVSRRQLDADGVPVTWEKFKELFEKRYLPQWLIYEKYRELCSLEQGDRTVTEYDEQFIRLSSLVSECIPDEAWKAHLFDNGLRADI
        FASLRL DAA SWW+V    L+ADGV VTWEKFKELFEKRYLP+WL  EK+RELC+LEQGD TV EYDEQFI+L+SL  E IPDEAW+A LF +GLRADI
Subjt:  FASLRLNDAALSWWIVSRRQLDADGVPVTWEKFKELFEKRYLPQWLIYEKYRELCSLEQGDRTVTEYDEQFIRLSSLVSECIPDEAWKAHLFDNGLRADI

Query:  RLLLCFVNNVSYPELRNLALMAEQRL
        R  +CF NNVSY E+RNLALM EQR+
Subjt:  RLLLCFVNNVSYPELRNLALMAEQRL

XP_004147729.1 uncharacterized protein LOC101209793 [Cucumis sativus]4.9e-8569.91Show/hide
Query:  MLQSEEVVSTVKTNNNHPVATEPAVNMGNVYDEMCNLLTEMRIIAAKKTNEEHNNKINHFFVCEPPCFGEDTDPLVAKQWVLKLEKFFDLIDCSDKQKVS
        M Q EEVVSTVKT N+  VA EP+VN+GNVYDE+CNL++EMRIIAAK+T+EE  NK + FF CEPP FGEDTDPLVA++W+L LE  FDLI CSD+ KVS
Subjt:  MLQSEEVVSTVKTNNNHPVATEPAVNMGNVYDEMCNLLTEMRIIAAKKTNEEHNNKINHFFVCEPPCFGEDTDPLVAKQWVLKLEKFFDLIDCSDKQKVS

Query:  FASLRLNDAALSWWIVSRRQLDADGVPVTWEKFKELFEKRYLPQWLIYEKYRELCSLEQGDRTVTEYDEQFIRLSSLVSECIPDEAWKAHLFDNGLRADI
        FA LRL DAA SWW+V    L+ADGV VTW+KFKELFEKRYLP WL  EK+RELC+LEQGD TV EYDEQFI+L+SL  E IPDEAW+A LF +GLRADI
Subjt:  FASLRLNDAALSWWIVSRRQLDADGVPVTWEKFKELFEKRYLPQWLIYEKYRELCSLEQGDRTVTEYDEQFIRLSSLVSECIPDEAWKAHLFDNGLRADI

Query:  RLLLCFVNNVSYPELRNLALMAEQRL
        R  +C +NN S  E+RNLALM EQR+
Subjt:  RLLLCFVNNVSYPELRNLALMAEQRL

XP_022931358.1 uncharacterized protein LOC111437567 isoform X1 [Cucurbita moschata]1.0e-7463.76Show/hide
Query:  NNHPVATEPAVNMGNVYDEMCNLLTE-MRIIAAKKTNEEHNNKINHFFVCEPPCFGEDTDPLVAKQWVLKLEKFFDLIDCSDKQKVSFASLRLNDAALSW
        N   +A EPA+N+G+V DE+C+L+ E +R++AA++TNEEHN+K N FFVC+PP FGEDTDPLVAK+WVL LE  FD I CSD+QKVSFA LRL D+ALSW
Subjt:  NNHPVATEPAVNMGNVYDEMCNLLTE-MRIIAAKKTNEEHNNKINHFFVCEPPCFGEDTDPLVAKQWVLKLEKFFDLIDCSDKQKVSFASLRLNDAALSW

Query:  WIVSRRQLDADGVPVTWEKFKELFEKRYLPQWLIYEKYRELCSLEQGDRTVTEYDEQFIRLSSLVSECIPDEAWKAHLFDNGLRADIRLLLCFVNNVSYP
        WIVS+R L+ADG  VTWEKFK+LF KRY P WL +EK+REL  L QG+RTV EYDE+FI LSSLVSE  PD++ +A LF  GLR DI   LCF +NVSY 
Subjt:  WIVSRRQLDADGVPVTWEKFKELFEKRYLPQWLIYEKYRELCSLEQGDRTVTEYDEQFIRLSSLVSECIPDEAWKAHLFDNGLRADIRLLLCFVNNVSYP

Query:  ELRNLALMAEQRLKNQEI
        +LRN AL+ EQ L  +++
Subjt:  ELRNLALMAEQRLKNQEI

XP_023522569.1 uncharacterized protein LOC111786568 [Cucurbita pepo subsp. pepo]3.9e-7463.3Show/hide
Query:  NNHPVATEPAVNMGNVYDEMCNLLTE-MRIIAAKKTNEEHNNKINHFFVCEPPCFGEDTDPLVAKQWVLKLEKFFDLIDCSDKQKVSFASLRLNDAALSW
        N   +A EPA+N+G+V DE+C+L+ E +R++AA++TNEEHN+K N FFVC+PP FGEDTDPLVAK+WVL LE  FD I CSD+Q VSFA LRL D+ALSW
Subjt:  NNHPVATEPAVNMGNVYDEMCNLLTE-MRIIAAKKTNEEHNNKINHFFVCEPPCFGEDTDPLVAKQWVLKLEKFFDLIDCSDKQKVSFASLRLNDAALSW

Query:  WIVSRRQLDADGVPVTWEKFKELFEKRYLPQWLIYEKYRELCSLEQGDRTVTEYDEQFIRLSSLVSECIPDEAWKAHLFDNGLRADIRLLLCFVNNVSYP
        WIVS+R L+ADG  VTWEKFK+LF KRY P WL +EK+REL  L QG+RTV EYDE+FI LSSLVSE  PD++ +A LF  GLR DI   LCF +NVSY 
Subjt:  WIVSRRQLDADGVPVTWEKFKELFEKRYLPQWLIYEKYRELCSLEQGDRTVTEYDEQFIRLSSLVSECIPDEAWKAHLFDNGLRADIRLLLCFVNNVSYP

Query:  ELRNLALMAEQRLKNQEI
        +LRN AL+ EQ L  +++
Subjt:  ELRNLALMAEQRLKNQEI

TrEMBL top hitse value%identityAlignment
A0A0A0L042 Retrotrans_gag domain-containing protein2.4e-8569.91Show/hide
Query:  MLQSEEVVSTVKTNNNHPVATEPAVNMGNVYDEMCNLLTEMRIIAAKKTNEEHNNKINHFFVCEPPCFGEDTDPLVAKQWVLKLEKFFDLIDCSDKQKVS
        M Q EEVVSTVKT N+  VA EP+VN+GNVYDE+CNL++EMRIIAAK+T+EE  NK + FF CEPP FGEDTDPLVA++W+L LE  FDLI CSD+ KVS
Subjt:  MLQSEEVVSTVKTNNNHPVATEPAVNMGNVYDEMCNLLTEMRIIAAKKTNEEHNNKINHFFVCEPPCFGEDTDPLVAKQWVLKLEKFFDLIDCSDKQKVS

Query:  FASLRLNDAALSWWIVSRRQLDADGVPVTWEKFKELFEKRYLPQWLIYEKYRELCSLEQGDRTVTEYDEQFIRLSSLVSECIPDEAWKAHLFDNGLRADI
        FA LRL DAA SWW+V    L+ADGV VTW+KFKELFEKRYLP WL  EK+RELC+LEQGD TV EYDEQFI+L+SL  E IPDEAW+A LF +GLRADI
Subjt:  FASLRLNDAALSWWIVSRRQLDADGVPVTWEKFKELFEKRYLPQWLIYEKYRELCSLEQGDRTVTEYDEQFIRLSSLVSECIPDEAWKAHLFDNGLRADI

Query:  RLLLCFVNNVSYPELRNLALMAEQRL
        R  +C +NN S  E+RNLALM EQR+
Subjt:  RLLLCFVNNVSYPELRNLALMAEQRL

A0A5A7TP79 Retrotrans_gag domain-containing protein5.5e-9073.01Show/hide
Query:  MLQSEEVVSTVKTNNNHPVATEPAVNMGNVYDEMCNLLTEMRIIAAKKTNEEHNNKINHFFVCEPPCFGEDTDPLVAKQWVLKLEKFFDLIDCSDKQKVS
        M Q EEVVSTVKT NNH VA EP+VN+GNVYDE+CNL++E+RIIAAK+T+EE +NK + FF CEPP FGEDTDPLVA++W+L LE  FDLI CSDKQKVS
Subjt:  MLQSEEVVSTVKTNNNHPVATEPAVNMGNVYDEMCNLLTEMRIIAAKKTNEEHNNKINHFFVCEPPCFGEDTDPLVAKQWVLKLEKFFDLIDCSDKQKVS

Query:  FASLRLNDAALSWWIVSRRQLDADGVPVTWEKFKELFEKRYLPQWLIYEKYRELCSLEQGDRTVTEYDEQFIRLSSLVSECIPDEAWKAHLFDNGLRADI
        FASLRL DAA SWW+V    L+ADGV VTWEK KELFEKRYLP+WL  EK+RELC+LEQGD TV EYDEQFI+L+SL  E IPDEAW+A LF +GLRADI
Subjt:  FASLRLNDAALSWWIVSRRQLDADGVPVTWEKFKELFEKRYLPQWLIYEKYRELCSLEQGDRTVTEYDEQFIRLSSLVSECIPDEAWKAHLFDNGLRADI

Query:  RLLLCFVNNVSYPELRNLALMAEQRL
        R  +CF NNVSY E+RNLALM EQR+
Subjt:  RLLLCFVNNVSYPELRNLALMAEQRL

A0A5D3CX20 Retrotrans_gag domain-containing protein1.1e-9073.45Show/hide
Query:  MLQSEEVVSTVKTNNNHPVATEPAVNMGNVYDEMCNLLTEMRIIAAKKTNEEHNNKINHFFVCEPPCFGEDTDPLVAKQWVLKLEKFFDLIDCSDKQKVS
        M Q EEVVSTVKT NNH VA EP+VN+GNVYDE+CNL++E+RIIAAK+T+EE +NK + FF CEPP FGEDTDPLVA++W+L LE  FDLI CSDKQKVS
Subjt:  MLQSEEVVSTVKTNNNHPVATEPAVNMGNVYDEMCNLLTEMRIIAAKKTNEEHNNKINHFFVCEPPCFGEDTDPLVAKQWVLKLEKFFDLIDCSDKQKVS

Query:  FASLRLNDAALSWWIVSRRQLDADGVPVTWEKFKELFEKRYLPQWLIYEKYRELCSLEQGDRTVTEYDEQFIRLSSLVSECIPDEAWKAHLFDNGLRADI
        FASLRL DAA SWW+V    L+ADGV VTWEKFKELFEKRYLP+WL  EK+RELC+LEQGD TV EYDEQFI+L+SL  E IPDEAW+A LF +GLRADI
Subjt:  FASLRLNDAALSWWIVSRRQLDADGVPVTWEKFKELFEKRYLPQWLIYEKYRELCSLEQGDRTVTEYDEQFIRLSSLVSECIPDEAWKAHLFDNGLRADI

Query:  RLLLCFVNNVSYPELRNLALMAEQRL
        R  +CF NNVSY E+RNLALM EQR+
Subjt:  RLLLCFVNNVSYPELRNLALMAEQRL

A0A6J1EYB6 uncharacterized protein LOC111437567 isoform X15.0e-7563.76Show/hide
Query:  NNHPVATEPAVNMGNVYDEMCNLLTE-MRIIAAKKTNEEHNNKINHFFVCEPPCFGEDTDPLVAKQWVLKLEKFFDLIDCSDKQKVSFASLRLNDAALSW
        N   +A EPA+N+G+V DE+C+L+ E +R++AA++TNEEHN+K N FFVC+PP FGEDTDPLVAK+WVL LE  FD I CSD+QKVSFA LRL D+ALSW
Subjt:  NNHPVATEPAVNMGNVYDEMCNLLTE-MRIIAAKKTNEEHNNKINHFFVCEPPCFGEDTDPLVAKQWVLKLEKFFDLIDCSDKQKVSFASLRLNDAALSW

Query:  WIVSRRQLDADGVPVTWEKFKELFEKRYLPQWLIYEKYRELCSLEQGDRTVTEYDEQFIRLSSLVSECIPDEAWKAHLFDNGLRADIRLLLCFVNNVSYP
        WIVS+R L+ADG  VTWEKFK+LF KRY P WL +EK+REL  L QG+RTV EYDE+FI LSSLVSE  PD++ +A LF  GLR DI   LCF +NVSY 
Subjt:  WIVSRRQLDADGVPVTWEKFKELFEKRYLPQWLIYEKYRELCSLEQGDRTVTEYDEQFIRLSSLVSECIPDEAWKAHLFDNGLRADIRLLLCFVNNVSYP

Query:  ELRNLALMAEQRLKNQEI
        +LRN AL+ EQ L  +++
Subjt:  ELRNLALMAEQRLKNQEI

A0A6J1EZ79 uncharacterized protein LOC111437567 isoform X22.3e-7264.42Show/hide
Query:  VNMGNVYDEMCNLLTE-MRIIAAKKTNEEHNNKINHFFVCEPPCFGEDTDPLVAKQWVLKLEKFFDLIDCSDKQKVSFASLRLNDAALSWWIVSRRQLDA
        +N+G+V DE+C+L+ E +R++AA++TNEEHN+K N FFVC+PP FGEDTDPLVAK+WVL LE  FD I CSD+QKVSFA LRL D+ALSWWIVS+R L+A
Subjt:  VNMGNVYDEMCNLLTE-MRIIAAKKTNEEHNNKINHFFVCEPPCFGEDTDPLVAKQWVLKLEKFFDLIDCSDKQKVSFASLRLNDAALSWWIVSRRQLDA

Query:  DGVPVTWEKFKELFEKRYLPQWLIYEKYRELCSLEQGDRTVTEYDEQFIRLSSLVSECIPDEAWKAHLFDNGLRADIRLLLCFVNNVSYPELRNLALMAE
        DG  VTWEKFK+LF KRY P WL +EK+REL  L QG+RTV EYDE+FI LSSLVSE  PD++ +A LF  GLR DI   LCF +NVSY +LRN AL+ E
Subjt:  DGVPVTWEKFKELFEKRYLPQWLIYEKYRELCSLEQGDRTVTEYDEQFIRLSSLVSECIPDEAWKAHLFDNGLRADIRLLLCFVNNVSYPELRNLALMAE

Query:  QRLKNQEI
        Q L  +++
Subjt:  QRLKNQEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCAATCGGAAGAAGTTGTTTCTACAGTGAAGACTAATAACAATCACCCCGTAGCAACTGAACCAGCTGTGAATATGGGAAATGTTTATGACGAAATGTGCAATCT
ACTCACTGAAATGAGGATTATTGCAGCTAAAAAGACTAATGAAGAACATAACAACAAGATTAATCATTTTTTTGTGTGTGAACCTCCTTGTTTTGGAGAGGATACTGACC
CCTTAGTTGCTAAACAATGGGTTTTGAAGTTAGAGAAATTTTTTGATTTGATAGACTGTTCAGATAAGCAGAAGGTTAGTTTTGCTAGTTTAAGATTGAATGATGCTGCA
CTTTCTTGGTGGATAGTGTCGCGTAGACAATTGGATGCTGATGGGGTTCCAGTGACATGGGAGAAGTTTAAGGAATTGTTTGAGAAGAGATATTTACCTCAATGGTTGAT
ATATGAGAAGTATCGTGAACTCTGTAGCTTGGAACAAGGAGATAGAACCGTAACTGAGTATGATGAACAATTCATTAGGTTGTCTTCTCTTGTTTCTGAATGTATTCCAG
ATGAAGCTTGGAAGGCTCACCTGTTTGATAATGGTTTAAGGGCAGATATTAGGCTACTACTTTGCTTCGTAAATAATGTGTCCTACCCCGAGCTTAGAAACTTGGCATTA
ATGGCAGAACAGCGCCTTAAGAATCAAGAAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTCAATCGGAAGAAGTTGTTTCTACAGTGAAGACTAATAACAATCACCCCGTAGCAACTGAACCAGCTGTGAATATGGGAAATGTTTATGACGAAATGTGCAATCT
ACTCACTGAAATGAGGATTATTGCAGCTAAAAAGACTAATGAAGAACATAACAACAAGATTAATCATTTTTTTGTGTGTGAACCTCCTTGTTTTGGAGAGGATACTGACC
CCTTAGTTGCTAAACAATGGGTTTTGAAGTTAGAGAAATTTTTTGATTTGATAGACTGTTCAGATAAGCAGAAGGTTAGTTTTGCTAGTTTAAGATTGAATGATGCTGCA
CTTTCTTGGTGGATAGTGTCGCGTAGACAATTGGATGCTGATGGGGTTCCAGTGACATGGGAGAAGTTTAAGGAATTGTTTGAGAAGAGATATTTACCTCAATGGTTGAT
ATATGAGAAGTATCGTGAACTCTGTAGCTTGGAACAAGGAGATAGAACCGTAACTGAGTATGATGAACAATTCATTAGGTTGTCTTCTCTTGTTTCTGAATGTATTCCAG
ATGAAGCTTGGAAGGCTCACCTGTTTGATAATGGTTTAAGGGCAGATATTAGGCTACTACTTTGCTTCGTAAATAATGTGTCCTACCCCGAGCTTAGAAACTTGGCATTA
ATGGCAGAACAGCGCCTTAAGAATCAAGAAATTTGA
Protein sequenceShow/hide protein sequence
MLQSEEVVSTVKTNNNHPVATEPAVNMGNVYDEMCNLLTEMRIIAAKKTNEEHNNKINHFFVCEPPCFGEDTDPLVAKQWVLKLEKFFDLIDCSDKQKVSFASLRLNDAA
LSWWIVSRRQLDADGVPVTWEKFKELFEKRYLPQWLIYEKYRELCSLEQGDRTVTEYDEQFIRLSSLVSECIPDEAWKAHLFDNGLRADIRLLLCFVNNVSYPELRNLAL
MAEQRLKNQEI