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Lsi07G008010 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G008010
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description60S ribosomal protein L27
Genome locationchr07:8908110..8908517
RNA-Seq ExpressionLsi07G008010
SyntenyLsi07G008010
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001141 - Ribosomal protein L27e
IPR008991 - Translation protein SH3-like domain superfamily
IPR018262 - Ribosomal protein L27e, conserved site
IPR038655 - Ribosomal protein L27e superfamily
IPR041991 - Eukaryotic Ribosomal Protein L27, KOW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649234.1 hypothetical protein Csa_014974 [Cucumis sativus]4.3e-6597.04Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL
        MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+D+L
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL

Query:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QS DK+VTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF

XP_004147739.1 60S ribosomal protein L27 [Cucumis sativus]5.6e-6596.3Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL
        MVKFLKPNKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVTID+L
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL

Query:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QS DK+VTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF

XP_004147740.1 60S ribosomal protein L27 [Cucumis sativus]4.3e-6597.04Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL
        MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+D+L
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL

Query:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QS DK+VTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF

XP_008451849.1 PREDICTED: 60S ribosomal protein L27-like [Cucumis melo]9.6e-6597.04Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL
        MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTID+L
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL

Query:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QS DK+V+AAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF

XP_008451854.1 PREDICTED: 60S ribosomal protein L27 [Cucumis melo]1.6e-6495.56Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL
        MVKFLKPNKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVTID+L
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL

Query:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QS DK+V+AAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF

TrEMBL top hitse value%identityAlignment
A0A0A0KVB4 60S ribosomal protein L272.1e-6597.04Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL
        MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+D+L
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL

Query:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QS DK+VTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF

A0A0A0KXF9 60S ribosomal protein L272.7e-6596.3Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL
        MVKFLKPNKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVTID+L
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL

Query:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QS DK+VTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF

A0A1S3BSF6 60S ribosomal protein L277.9e-6595.56Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL
        MVKFLKPNKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVTID+L
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL

Query:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QS DK+V+AAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF

A0A1S3BT89 60S ribosomal protein L274.7e-6597.04Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL
        MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTID+L
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL

Query:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QS DK+V+AAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF

A0A5A7V5M7 60S ribosomal protein L274.7e-6597.04Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL
        MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTID+L
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL

Query:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QS DK+V+AAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF

SwissProt top hitse value%identityAlignment
P41101 60S ribosomal protein L273.0e-5378.42Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDL----KDVVT
        M KFLKPNKAVI+LQG+YAGRKAVI+RAFD+GTRDR YGHCLVAGI +YP KVIRKDSAKK  KKSRVKAFIKLVNY H+MPTRYTLD DL    KDVV 
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDL----KDVVT

Query:  IDALQSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF
         D LQ+ DK+VT A+ TK R  ERFKTGKNRWFFTKLRF
Subjt:  IDALQSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF

P51419 60S ribosomal protein L27-38.2e-5983.7Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL
        MVKFLK NKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDSAKKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+DAL
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL

Query:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QS DK+V A KE K + EERFKTGKNRWFFTKLRF
Subjt:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF

Q05462 60S ribosomal protein L272.2e-5983.7Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL
        MVKFLKPNKAVI+LQGRYAG+KAVI++ FDDGTR++ YGHCLVAGIKK+P+KVI+KDSAKKTAKKSRVKAF+KLVNY+HLMPTRYTLDVDLKD V  D L
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL

Query:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QS DK+VTA KETKK  EERFKTGKNRWFFTKLRF
Subjt:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF

Q8LCL3 60S ribosomal protein L27-28.2e-5983.7Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL
        MVKFLK NKAVI+LQGRYAG+KAVII++FDDGT DR YGHCLVAG+KKYP+KVIRKDSAKKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+DAL
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL

Query:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF
        +S DK+VTA KE K + EERFKTGKNRWFFTKLRF
Subjt:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF

Q9SKX8 60S ribosomal protein L27-11.6e-5475.56Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL
        MVK +KP KAVI+LQGRY G+KAVI+++FDDGT ++ YGHCLVAG+KKYP+KVIRKDSAKKTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ DA+
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL

Query:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF
         S DK+VTA KE K +FEERFKTGKNRWFFTKLRF
Subjt:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF

Arabidopsis top hitse value%identityAlignment
AT2G32220.1 Ribosomal L27e protein family1.1e-5575.56Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL
        MVK +KP KAVI+LQGRY G+KAVI+++FDDGT ++ YGHCLVAG+KKYP+KVIRKDSAKKTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ DA+
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL

Query:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF
         S DK+VTA KE K +FEERFKTGKNRWFFTKLRF
Subjt:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF

AT3G22230.1 Ribosomal L27e protein family5.8e-6083.7Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL
        MVKFLK NKAVI+LQGRYAG+KAVII++FDDGT DR YGHCLVAG+KKYP+KVIRKDSAKKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+DAL
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL

Query:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF
        +S DK+VTA KE K + EERFKTGKNRWFFTKLRF
Subjt:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF

AT4G15000.1 Ribosomal L27e protein family5.8e-6083.7Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL
        MVKFLK NKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDSAKKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+DAL
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL

Query:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QS DK+V A KE K + EERFKTGKNRWFFTKLRF
Subjt:  QSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF

AT4G15000.2 Ribosomal L27e protein family2.0e-5282.11Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL
        MVKFLK NKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDSAKKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+DAL
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDAL

Query:  QSLDKRVTAAKETKKRFEERFKT
        QS DK+V A KE K + EERFKT
Subjt:  QSLDKRVTAAKETKKRFEERFKT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAATTCCTCAAGCCGAACAAAGCCGTCATCGTCCTTCAAGGCCGTTACGCCGGCCGGAAGGCTGTCATCATTCGCGCCTTCGACGATGGAACTCGGGATCGGGC
TTATGGCCACTGCTTAGTCGCTGGAATAAAAAAGTACCCGGCCAAGGTCATCCGCAAGGACTCCGCCAAGAAGACCGCTAAGAAATCCCGAGTCAAGGCCTTCATCAAGC
TCGTCAATTACAGGCACCTCATGCCCACCAGGTACACTCTCGATGTCGATCTTAAAGACGTTGTGACTATCGATGCTTTGCAATCGTTGGACAAGAGGGTGACCGCCGCC
AAGGAGACCAAGAAGAGGTTCGAGGAAAGGTTCAAAACCGGGAAGAACAGGTGGTTTTTCACCAAGCTCAGGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAAATTCCTCAAGCCGAACAAAGCCGTCATCGTCCTTCAAGGCCGTTACGCCGGCCGGAAGGCTGTCATCATTCGCGCCTTCGACGATGGAACTCGGGATCGGGC
TTATGGCCACTGCTTAGTCGCTGGAATAAAAAAGTACCCGGCCAAGGTCATCCGCAAGGACTCCGCCAAGAAGACCGCTAAGAAATCCCGAGTCAAGGCCTTCATCAAGC
TCGTCAATTACAGGCACCTCATGCCCACCAGGTACACTCTCGATGTCGATCTTAAAGACGTTGTGACTATCGATGCTTTGCAATCGTTGGACAAGAGGGTGACCGCCGCC
AAGGAGACCAAGAAGAGGTTCGAGGAAAGGTTCAAAACCGGGAAGAACAGGTGGTTTTTCACCAAGCTCAGGTTCTGA
Protein sequenceShow/hide protein sequence
MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDALQSLDKRVTAA
KETKKRFEERFKTGKNRWFFTKLRF