; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi07G008070 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G008070
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptioncold shock domain-containing protein 3-like
Genome locationchr07:8993203..8996448
RNA-Seq ExpressionLsi07G008070
SyntenyLsi07G008070
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR010666 - Zinc finger, GRF-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7015092.1 DNA topoisomerase 3-alpha, partial [Cucurbita argyrosperma subsp. argyrosperma]4.3e-16284.01Show/hide
Query:  MKFEAKRNFDFDLEEDNDEDFLSAVAAAEAVALASKRRKIPNHTIDPPKNAVAEVSDKVPPNVDAEGIYIAALKGNPILLSQLCTWKANSGNKGSISANT
        MKFEAKRNFDFDL +D+DEDFLS VAAAEA ALASKRRKIPNHTIDPPK A+AEV+ KV PN DAEGIYIAALKG+PI+LSQL    ANSGNKG ISANT
Subjt:  MKFEAKRNFDFDLEEDNDEDFLSAVAAAEAVALASKRRKIPNHTIDPPKNAVAEVSDKVPPNVDAEGIYIAALKGNPILLSQLCTWKANSGNKGSISANT

Query:  T--AQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVTNLMTYG
        T  AQSEGGGSCFKCGKLGHWARDCDAPG GGSFSASGNDTSVAEK+CPCG+GVC VLTANTERNRGRKFYKCPVRQENGGCGFFEWCD+AS TN+MTYG
Subjt:  T--AQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVTNLMTYG

Query:  SQNRASSSSFSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSSSSCYKCGGEGH
        SQNRASSSSFSDL+CPCGAGSCI LTAKTGENVGQQFYRCPSYQATCGFFQWCKE S A KNQVS SKVYGNT D SK    T R G  SSCYKCGGEGH
Subjt:  SQNRASSSSFSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSSSSCYKCGGEGH

Query:  WARDCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCSN
        WARDCSQSLA SN        +SSS G+CFKCGKPGHWARDCSN
Subjt:  WARDCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCSN

XP_022931285.1 cold shock domain-containing protein 3-like [Cucurbita moschata]5.7e-16283.82Show/hide
Query:  MKFEAKRNFDFDL-EEDNDEDFLSAVAAAEAVALASKRRKIPNHTIDPPKNAVAEVSDKVPPNVDAEGIYIAALKGNPILLSQLCTWKANSGNKGSISAN
        MKFEAKRNFDFDL ++D+DEDFLS VAAAEA ALASKRRKIPNHTIDPPK A+AEV+ KV PN DAEGIYIAALKG+PI+LSQL    ANSGNKG ISAN
Subjt:  MKFEAKRNFDFDL-EEDNDEDFLSAVAAAEAVALASKRRKIPNHTIDPPKNAVAEVSDKVPPNVDAEGIYIAALKGNPILLSQLCTWKANSGNKGSISAN

Query:  TT--AQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVTNLMTY
        TT  AQSEGGGSCFKCGKLGHWARDCDAPG GGSFS SGNDTSVAEK+CPCG+GVC VLTANTERNRGRKFYKCPVRQENGGCGFFEWCD+AS TN+MTY
Subjt:  TT--AQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVTNLMTY

Query:  GSQNRASSSSFSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSSSSCYKCGGEG
        GSQNRASSSSFSDL+CPCGAGSCI LTAKTGENVGQQFYRCPSYQATCGFFQWCKE S A KNQVS SKVYGNT DTSK    T R G  SSCYKCGGEG
Subjt:  GSQNRASSSSFSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSSSSCYKCGGEG

Query:  HWARDCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCSNC
        HWARDCSQSLA SN        +SSS G+CFKCGKPGHWARDCSNC
Subjt:  HWARDCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCSNC

XP_022984959.1 cold shock domain-containing protein 3-like [Cucurbita maxima]2.0e-16785.59Show/hide
Query:  MKFEAKRNFDFDL-EEDNDEDFLSAVAAAEAVALASKRRKIPNHTIDPPKNAVAEVSDKVPPNVDAEGIYIAALKGNPILLSQLCTWKANSGNKGSISAN
        MKFEAKRNFDFDL ++D+DEDFLS VAAAEA ALASKRRKIPNHTI+PPK A+AEV++KV PNVDAEGIYIAALKG+PI+LSQL    ANSGNKG ISAN
Subjt:  MKFEAKRNFDFDL-EEDNDEDFLSAVAAAEAVALASKRRKIPNHTIDPPKNAVAEVSDKVPPNVDAEGIYIAALKGNPILLSQLCTWKANSGNKGSISAN

Query:  TT--AQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVTNLMTY
        TT  AQS+GGGSCFKCGKLGHWARDCDAPG GGSFSAS NDTSVAEK+CPCG GVC VLTANTERNRGRKFYKCPVRQENGGCGFFEWCD+AS TN+MTY
Subjt:  TT--AQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVTNLMTY

Query:  GSQNRASSSSFSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSSSSCYKCGGEG
        GSQNRASSSSFSDL+CPCGAGSCI LTAKTGENVGQQFYRCPSYQATCGFFQWCKEPS A KNQVSASKVYGNT DTSK    T R G  SSCYKCGGEG
Subjt:  GSQNRASSSSFSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSSSSCYKCGGEG

Query:  HWARDCSQSLASSN-PPSEFGRSESSSVGTCFKCGKPGHWARDCSNC
        HWARDCSQSLA SN PP+EFGR++SSS G+CFKCGKPGHWARDCSNC
Subjt:  HWARDCSQSLASSN-PPSEFGRSESSSVGTCFKCGKPGHWARDCSNC

XP_023552737.1 cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo]9.0e-16885.55Show/hide
Query:  MKFEAKRNFDFDLEEDNDEDFLSAVAAAEAVALASKRRKIPNHTIDPPKNAVAEVSDKVPPNVDAEGIYIAALKGNPILLSQLCTWKANSGNKGSISANT
        MKFEAKRNFDFDL +D+DEDFLS VAAAEA ALASKRRKIPNHTIDPPK AVAEV+ KV PN DAEGIYIAALKG+PI+LSQL    ANSGNKG ISANT
Subjt:  MKFEAKRNFDFDLEEDNDEDFLSAVAAAEAVALASKRRKIPNHTIDPPKNAVAEVSDKVPPNVDAEGIYIAALKGNPILLSQLCTWKANSGNKGSISANT

Query:  T--AQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVTNLMTYG
        T  AQSEGGGSCFKCGKLGHWARDCDAPG GGSFSASGNDTSVAEK+CPCG+GVC VLTANTERNRGRKFYKC VRQENGGCGFFEWCD+AS TN+MTYG
Subjt:  T--AQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVTNLMTYG

Query:  SQNRASSSSFSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSSSSCYKCGGEGH
        SQNRASSSSFSDL+CPCGAGSCI LTAKTG+NVGQQFYRCPSYQATCGFFQWCKEPS A KNQ S SKVYGNT DTSK    T R G  SSCYKCGGEGH
Subjt:  SQNRASSSSFSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSSSSCYKCGGEGH

Query:  WARDCSQSLASSN-PPSEFGRSESSSVGTCFKCGKPGHWARDCSNC
        WARDCSQSLA SN PP+EFGR++SSS G+CFKCGKPGHWARDCSNC
Subjt:  WARDCSQSLASSN-PPSEFGRSESSSVGTCFKCGKPGHWARDCSNC

XP_038903890.1 cold shock domain-containing protein 3-like [Benincasa hispida]7.9e-18091.52Show/hide
Query:  MKFEAKRNFDFDLEEDNDEDFLSAVAAAEAVALASKRRKIPNHTIDPPKNAVAEVSDKVPPNVDAEGIYIAALKGNPILLSQLCTWKANSGNKGSISANT
        MK EAKRNFDFDLEEDNDEDFLSAVAAAEAVALASKRRKIPNH IDPPKNAVAEVSDK+P N +AEGIYIAALKGNPILLSQ+  WK NSGNKGSISANT
Subjt:  MKFEAKRNFDFDLEEDNDEDFLSAVAAAEAVALASKRRKIPNHTIDPPKNAVAEVSDKVPPNVDAEGIYIAALKGNPILLSQLCTWKANSGNKGSISANT

Query:  TAQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVTNLMTYGSQ
        TAQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGND SVAEKACPCGLGVCS+LTANTERNRGRKFYKCPVRQENGGCGFFEWCDS  V  +M YGSQ
Subjt:  TAQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVTNLMTYGSQ

Query:  NRASSSSFSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSSSSCYKCGGEGHWA
        NRASSSSFSD+QCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPS ATKNQVSASKVY NT D SKS AVTVRTGSSSSCYKCGGEGHWA
Subjt:  NRASSSSFSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSSSSCYKCGGEGHWA

Query:  RDCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCSN
        RDCSQSLAS NPP EFGRS+SSS+GTCFKCGKPGHWARDC+N
Subjt:  RDCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCSN

TrEMBL top hitse value%identityAlignment
A0A0A0KVB6 Uncharacterized protein7.5e-12874.05Show/hide
Query:  AAEAVALASKRRKIPNHTIDPPKNAVAEVSDKVPPNVDAEGIYIAALKGNPILLSQLCTWKANSGNKGSISANTTAQSEGGGSCFKCGKLGHWARDCDAP
        AAE V+L  K R +PN TID PKNAVAEVS KVP N D  G YIA  KG+   LSQ+   +A+S    SI  NTTAQSEG GSCFKCGKLGHWARDCDAP
Subjt:  AAEAVALASKRRKIPNHTIDPPKNAVAEVSDKVPPNVDAEGIYIAALKGNPILLSQLCTWKANSGNKGSISANTTAQSEGGGSCFKCGKLGHWARDCDAP

Query:  GGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVTNLMTYGSQNRASSSSFSDLQCPCGAGSCIILTAK
        GGGGSFS+SGND SV +KACPCG G+CSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASV N+++YGSQN   SSSFSDLQCPCGAGSC ILTAK
Subjt:  GGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVTNLMTYGSQNRASSSSFSDLQCPCGAGSCIILTAK

Query:  TGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSSSSCYKCGGEGHWARDCSQSLASSNPPSEFGRSESSSVGT
        TG NVG+QFY CPS QA+C FF+WC+EPS  TKNQ S  KVYGNT DTSKS  + V+T SSSS YK G EGHWARD SQS +SS  P+E+GRS+SSS G+
Subjt:  TGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSSSSCYKCGGEGHWARDCSQSLASSNPPSEFGRSESSSVGT

Query:  CFKCGKPGHWARDCSN
        CFKCG PGHWARDCSN
Subjt:  CFKCGKPGHWARDCSN

A0A1S4DYV0 DNA-binding protein HEXBP-like1.6e-9871.6Show/hide
Query:  KGSISANTTAQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVT
        +G   A    + +  G+CFKCGKLGHWARDCDAPGGGGSF++SGND SVAEKA PCG GVC VLTANTERNRGRKFY+C VRQENGGCGFFEWCDSA   
Subjt:  KGSISANTTAQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVT

Query:  NLMTYGSQNRASSSSFSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSSSSCYK
        N +         SSSF DLQCPCGAGSC ILTAK+  NVG+QFY CPS Q +C FFQWC+EPS  TKNQVSA KVY N  D SKS    V+T SSSSCYK
Subjt:  NLMTYGSQNRASSSSFSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSSSSCYK

Query:  CGGEGHWARDCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCSN
        CGGEGHWARDCSQSL+ SNPP+ +GRS+SSS+G+CFKCG+PGHWA+DCSN
Subjt:  CGGEGHWARDCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCSN

A0A6J1C4N6 DNA-binding protein HEXBP-like9.1e-15075.48Show/hide
Query:  MKFEAKRNFDFDLEEDNDEDFLSAVAAAEAVALASKRRKIPNHTIDPPKNAVAEVSDKVPPNVDAEGIYIAALKGNPILLSQLCTWKANS-------GNK
        MK EAKRNF+FDLE+D+DEDFLSAVAAAEA ALASKRR+IPNHTIDPPK A+AE         + EG+Y+AAL+G P L SQ+    ANS        N+
Subjt:  MKFEAKRNFDFDLEEDNDEDFLSAVAAAEAVALASKRRKIPNHTIDPPKNAVAEVSDKVPPNVDAEGIYIAALKGNPILLSQLCTWKANS-------GNK

Query:  GSISANTTAQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVTN
        G +SAN TAQSEGGGSCFKCGKLGHWARDCDAPGGGGSF  +G D SVAEKACPCGLGVC VLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSAS TN
Subjt:  GSISANTTAQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVTN

Query:  LMTYGSQNRASSSSFSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSS------
        +MTYGSQNRASSS FSDL CPCGAGSCIILTAKTGENVGQQFYRCPSYQ +CGFFQWCKEP  ATKNQV+  K+YGN  DTSKS A T RT SS      
Subjt:  LMTYGSQNRASSSSFSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSS------

Query:  ------SSCYKCGGEGHWARDCSQSLASSNPP-SEFGRSESSSVGTCFKCGKPGHWARDCSNC
              SSCYKCGGEGHWARDCSQS  SSNPP +E GR+ S+S GTCFKC KPGHWARDC NC
Subjt:  ------SSCYKCGGEGHWARDCSQSLASSNPP-SEFGRSESSSVGTCFKCGKPGHWARDCSNC

A0A6J1EZ11 cold shock domain-containing protein 3-like2.7e-16283.82Show/hide
Query:  MKFEAKRNFDFDL-EEDNDEDFLSAVAAAEAVALASKRRKIPNHTIDPPKNAVAEVSDKVPPNVDAEGIYIAALKGNPILLSQLCTWKANSGNKGSISAN
        MKFEAKRNFDFDL ++D+DEDFLS VAAAEA ALASKRRKIPNHTIDPPK A+AEV+ KV PN DAEGIYIAALKG+PI+LSQL    ANSGNKG ISAN
Subjt:  MKFEAKRNFDFDL-EEDNDEDFLSAVAAAEAVALASKRRKIPNHTIDPPKNAVAEVSDKVPPNVDAEGIYIAALKGNPILLSQLCTWKANSGNKGSISAN

Query:  TT--AQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVTNLMTY
        TT  AQSEGGGSCFKCGKLGHWARDCDAPG GGSFS SGNDTSVAEK+CPCG+GVC VLTANTERNRGRKFYKCPVRQENGGCGFFEWCD+AS TN+MTY
Subjt:  TT--AQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVTNLMTY

Query:  GSQNRASSSSFSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSSSSCYKCGGEG
        GSQNRASSSSFSDL+CPCGAGSCI LTAKTGENVGQQFYRCPSYQATCGFFQWCKE S A KNQVS SKVYGNT DTSK    T R G  SSCYKCGGEG
Subjt:  GSQNRASSSSFSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSSSSCYKCGGEG

Query:  HWARDCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCSNC
        HWARDCSQSLA SN        +SSS G+CFKCGKPGHWARDCSNC
Subjt:  HWARDCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCSNC

A0A6J1JBZ0 cold shock domain-containing protein 3-like9.7e-16885.59Show/hide
Query:  MKFEAKRNFDFDL-EEDNDEDFLSAVAAAEAVALASKRRKIPNHTIDPPKNAVAEVSDKVPPNVDAEGIYIAALKGNPILLSQLCTWKANSGNKGSISAN
        MKFEAKRNFDFDL ++D+DEDFLS VAAAEA ALASKRRKIPNHTI+PPK A+AEV++KV PNVDAEGIYIAALKG+PI+LSQL    ANSGNKG ISAN
Subjt:  MKFEAKRNFDFDL-EEDNDEDFLSAVAAAEAVALASKRRKIPNHTIDPPKNAVAEVSDKVPPNVDAEGIYIAALKGNPILLSQLCTWKANSGNKGSISAN

Query:  TT--AQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVTNLMTY
        TT  AQS+GGGSCFKCGKLGHWARDCDAPG GGSFSAS NDTSVAEK+CPCG GVC VLTANTERNRGRKFYKCPVRQENGGCGFFEWCD+AS TN+MTY
Subjt:  TT--AQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVTNLMTY

Query:  GSQNRASSSSFSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSSSSCYKCGGEG
        GSQNRASSSSFSDL+CPCGAGSCI LTAKTGENVGQQFYRCPSYQATCGFFQWCKEPS A KNQVSASKVYGNT DTSK    T R G  SSCYKCGGEG
Subjt:  GSQNRASSSSFSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSSSSCYKCGGEG

Query:  HWARDCSQSLASSN-PPSEFGRSESSSVGTCFKCGKPGHWARDCSNC
        HWARDCSQSLA SN PP+EFGR++SSS G+CFKCGKPGHWARDCSNC
Subjt:  HWARDCSQSLASSN-PPSEFGRSESSSVGTCFKCGKPGHWARDCSNC

SwissProt top hitse value%identityAlignment
O65639 Cold shock protein 11.1e-0626.15Show/hide
Query:  NTTAQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFF-EWCDSASVTNLMTY
        N   +  GG  C+ CG+LGH ++DC   GGGG     G   S   + C                      Y C      G  G F   C SA        
Subjt:  NTTAQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFF-EWCDSASVTNLMTY

Query:  GSQNRASSSSFSDLQCPCG-----AGSCIILTAKTGENVG------QQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAV----TV
            R ++   +D    CG     A  C   +   G+  G         Y C       G F        A  N  S     G        G +      
Subjt:  GSQNRASSSSFSDLQCPCG-----AGSCIILTAKTGENVG------QQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAV----TV

Query:  RTGSSSSCYKCGGEGHWARDCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCSN
        +   S  CY+CGG GH ARDC Q           G     +   C+KCGK GH+AR+CS+
Subjt:  RTGSSSSCYKCGGEGHWARDCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCSN

P27484 Glycine-rich protein 24.9e-0744.07Show/hide
Query:  TGSSSSCYKCGGEGHWARDCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCSN
        +G  S C+KCG  GH+ARDCSQS          G       G C+KCG+ GH+AR+C++
Subjt:  TGSSSSCYKCGGEGHWARDCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCSN

Q04832 DNA-binding protein HEXBP5.4e-0625.73Show/hide
Query:  QSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVTNLMTYGSQNR
        ++E   SC  CGK GH+AR+C          + G++ S       CG               G    +CP    +G  G    C        M+    N 
Subjt:  QSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVTNLMTYGSQNR

Query:  ASSSSFSDLQC-PCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSSSSCYKCGGEGHWAR
        A   +    +C  CG               G     CPS                   +Q  +   YG  R   +SGA    +G   +CYKCG  GH +R
Subjt:  ASSSSFSDLQC-PCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSSSSCYKCGGEGHWAR

Query:  DCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCSN
        DC         P+  G    +   TC+KCG  GH +RDC N
Subjt:  DCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCSN

Q94C69 Cold shock domain-containing protein 33.0e-0928.57Show/hide
Query:  GSISANTTAQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKAC-PCG-----LGVCSVLTANTE---RNRGRKFYKCPVRQENGGCGFF-
        GS++    +    GG+CF CG++GH A+DCD   GG SF   G   S  E  C  CG        C              GR  Y C      G  G   
Subjt:  GSISANTTAQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKAC-PCG-----LGVCSVLTANTE---RNRGRKFYKCPVRQENGGCGFF-

Query:  EWCDSASVTNLMTYGSQNRASSSSFSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVR
        + C   S  N   YG      S       C              G NVG     C     TCG              +V  SK+         SG     
Subjt:  EWCDSASVTNLMTYGSQNRASSSSFSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVR

Query:  TGSSSSCYKCGGEGHWARDCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCSN
         G   +CY+CGG GH ARDC +  + S+               CF CGK GH+AR+C++
Subjt:  TGSSSSCYKCGGEGHWARDCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCSN

Q9NG98 DNA topoisomerase 3-alpha5.7e-0824.87Show/hide
Query:  NRGRKFYKCPVRQENGGCGFFEWCD-------------------------------------------------SASVTNLMTYGSQ---NRASSSSFSD
        N GR +YKCP   E   C FF+W D                                                 S++VT   T   Q   N A+     +
Subjt:  NRGRKFYKCPVRQENGGCGFFEWCD-------------------------------------------------SASVTNLMTYGSQ---NRASSSSFSD

Query:  LQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSSSSCYKCGGEGHWARDC
        + C CG  +  +   K G N G+ FY CP+ + +CGFF+W  E      +  S      N    S+  A+T     +  C  C  EGH    C
Subjt:  LQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSSSSCYKCGGEGHWARDC

Arabidopsis top hitse value%identityAlignment
AT2G17870.1 cold shock domain protein 32.2e-1028.57Show/hide
Query:  GSISANTTAQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKAC-PCG-----LGVCSVLTANTE---RNRGRKFYKCPVRQENGGCGFF-
        GS++    +    GG+CF CG++GH A+DCD   GG SF   G   S  E  C  CG        C              GR  Y C      G  G   
Subjt:  GSISANTTAQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKAC-PCG-----LGVCSVLTANTE---RNRGRKFYKCPVRQENGGCGFF-

Query:  EWCDSASVTNLMTYGSQNRASSSSFSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVR
        + C   S  N   YG      S       C              G NVG     C     TCG              +V  SK+         SG     
Subjt:  EWCDSASVTNLMTYGSQNRASSSSFSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVR

Query:  TGSSSSCYKCGGEGHWARDCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCSN
         G   +CY+CGG GH ARDC +  + S+               CF CGK GH+AR+C++
Subjt:  TGSSSSCYKCGGEGHWARDCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCSN

AT3G42860.1 zinc knuckle (CCHC-type) family protein2.3e-6044.96Show/hide
Query:  EGIYIAALKGNPILLSQLCTWKANSGNKGSISANTTAQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRG
        EG Y+AALKG     S+   W+ +  N  S  + + A + GG                 + GGGG       +    EK+CPCG+G+C +LT+NT +N G
Subjt:  EGIYIAALKGNPILLSQLCTWKANSGNKGSISANTTAQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRG

Query:  RKFYKCPVRQENGGCGFFEWCDS--ASVTNLMTYGSQNRASSSSFSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVS
        RKFYKCP R+ENGGCGFF+WCD+  +S T+  T  S    + + F D QCPCGAG C +LTAKTGENVG+QFYRCP ++ +CGFF+WC +   ++    S
Subjt:  RKFYKCPVRQENGGCGFFEWCDS--ASVTNLMTYGSQNRASSSSFSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVS

Query:  ASKVYGNTRDTSKSGAVTVRTGSSSSCYKCGGEGHWARDCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCS
         +K   N  D+   G    +TG  + CYKCG EGHWARDC  ++ S   P +     +S+ G CFKCGKPGHW+RDC+
Subjt:  ASKVYGNTRDTSKSGAVTVRTGSSSSCYKCGGEGHWARDCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCS

AT3G43590.1 zinc knuckle (CCHC-type) family protein3.2e-0623.46Show/hide
Query:  GNKGSISANTTAQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENG--GCGFFEWCDS
        G +G  S N    ++    CF CG L H A+ C          + G+D  + +K                    G +   CP + +NG  G       D 
Subjt:  GNKGSISANTTAQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENG--GCGFFEWCDS

Query:  ASVTNLMTYGSQNRASSSSFSDLQCPCGAGSCIILTAKTGENV--GQQFYRCPSY---QATCG-FFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTV
             L  Y      S     D+QC        +   + G ++      YRC         CG  ++   E  +AT  ++  S+                
Subjt:  ASVTNLMTYGSQNRASSSSFSDLQCPCGAGSCIILTAKTGENV--GQQFYRCPSY---QATCG-FFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTV

Query:  RTGSSSSCYKCGGEGHWARDCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCSN
            +S CY+CG EGH+AR+C     SS+  +  GR   +    C++C   GH+AR+C N
Subjt:  RTGSSSSCYKCGGEGHWARDCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCSN

AT4G36020.1 cold shock domain protein 17.7e-0826.15Show/hide
Query:  NTTAQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFF-EWCDSASVTNLMTY
        N   +  GG  C+ CG+LGH ++DC   GGGG     G   S   + C                      Y C      G  G F   C SA        
Subjt:  NTTAQSEGGGSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFF-EWCDSASVTNLMTY

Query:  GSQNRASSSSFSDLQCPCG-----AGSCIILTAKTGENVG------QQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAV----TV
            R ++   +D    CG     A  C   +   G+  G         Y C       G F        A  N  S     G        G +      
Subjt:  GSQNRASSSSFSDLQCPCG-----AGSCIILTAKTGENVG------QQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAV----TV

Query:  RTGSSSSCYKCGGEGHWARDCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCSN
        +   S  CY+CGG GH ARDC Q           G     +   C+KCGK GH+AR+CS+
Subjt:  RTGSSSSCYKCGGEGHWARDCSQSLASSNPPSEFGRSESSSVGTCFKCGKPGHWARDCSN

AT5G13920.1 GRF zinc finger / Zinc knuckle protein3.1e-1734.48Show/hide
Query:  GSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVTNLMTYGSQNRASSSS
        G CF+C + GHW  DC           S  D       CPCG G C +  ANT  N GRKFYKCP  Q    C FF+WCD  +         ++     +
Subjt:  GSCFKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVTNLMTYGSQNRASSSS

Query:  FSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQ--ATCGFFQW
        F+   C CGAG C     +  +  G+ +  C   +    CGFF+W
Subjt:  FSDLQCPCGAGSCIILTAKTGENVGQQFYRCPSYQ--ATCGFFQW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTTCGAAGCTAAGAGGAATTTTGATTTCGATCTCGAAGAAGACAACGATGAAGATTTTCTTTCAGCGGTGGCCGCAGCTGAAGCTGTTGCCCTAGCCAGTAAACG
CAGAAAAATCCCTAATCATACCATCGATCCGCCTAAAAATGCCGTCGCCGAGGTTTCGGACAAAGTTCCCCCTAATGTAGACGCGGAAGGGATCTACATCGCCGCTTTGA
AAGGAAACCCTATTCTCCTCTCTCAGCTTTGTACTTGGAAAGCCAATTCTGGCAACAAAGGATCCATTTCTGCAAATACTACTGCTCAATCGGAAGGCGGTGGTTCGTGT
TTCAAATGCGGGAAATTGGGGCATTGGGCTAGAGACTGCGATGCTCCCGGAGGTGGAGGGTCTTTCAGCGCTTCAGGAAATGATACGTCTGTTGCGGAGAAAGCATGCCC
CTGCGGATTGGGAGTTTGTTCAGTACTAACTGCGAATACGGAGAGGAATCGCGGTCGAAAATTTTACAAATGTCCCGTTCGGCAGGAAAATGGTGGCTGCGGATTCTTTG
AGTGGTGTGACAGTGCCTCTGTAACTAATCTAATGACTTATGGAAGCCAAAATCGTGCATCAAGTTCGTCATTTTCAGACCTTCAGTGCCCCTGTGGTGCTGGTTCTTGC
ATAATTCTAACAGCCAAAACAGGGGAAAATGTTGGGCAGCAATTCTATCGTTGCCCTTCATACCAGGCAACTTGTGGGTTTTTCCAGTGGTGCAAGGAGCCTTCCACGGC
AACCAAGAATCAAGTGAGTGCCTCTAAAGTCTACGGTAACACACGTGACACGAGCAAAAGCGGTGCTGTGACTGTGAGAACTGGTTCTTCCAGTTCCTGTTATAAATGTG
GAGGTGAAGGGCATTGGGCTAGAGACTGCTCGCAGTCACTTGCATCATCAAATCCTCCTTCAGAGTTTGGCAGAAGTGAATCTTCTTCAGTTGGAACCTGTTTCAAATGT
GGTAAGCCTGGCCATTGGGCGAGGGACTGCTCTAATTGTTAA
mRNA sequenceShow/hide mRNA sequence
CGGGAAACAAAGCCCTAGAAGAAAAAGAGGCAAAATTTCAAAACCTAGCCCGATCACAGAGGGGGAGAGAGAGATGAAGTTCGAAGCTAAGAGGAATTTTGATTTCGATC
TCGAAGAAGACAACGATGAAGATTTTCTTTCAGCGGTGGCCGCAGCTGAAGCTGTTGCCCTAGCCAGTAAACGCAGAAAAATCCCTAATCATACCATCGATCCGCCTAAA
AATGCCGTCGCCGAGGTTTCGGACAAAGTTCCCCCTAATGTAGACGCGGAAGGGATCTACATCGCCGCTTTGAAAGGAAACCCTATTCTCCTCTCTCAGCTTTGTACTTG
GAAAGCCAATTCTGGCAACAAAGGATCCATTTCTGCAAATACTACTGCTCAATCGGAAGGCGGTGGTTCGTGTTTCAAATGCGGGAAATTGGGGCATTGGGCTAGAGACT
GCGATGCTCCCGGAGGTGGAGGGTCTTTCAGCGCTTCAGGAAATGATACGTCTGTTGCGGAGAAAGCATGCCCCTGCGGATTGGGAGTTTGTTCAGTACTAACTGCGAAT
ACGGAGAGGAATCGCGGTCGAAAATTTTACAAATGTCCCGTTCGGCAGGAAAATGGTGGCTGCGGATTCTTTGAGTGGTGTGACAGTGCCTCTGTAACTAATCTAATGAC
TTATGGAAGCCAAAATCGTGCATCAAGTTCGTCATTTTCAGACCTTCAGTGCCCCTGTGGTGCTGGTTCTTGCATAATTCTAACAGCCAAAACAGGGGAAAATGTTGGGC
AGCAATTCTATCGTTGCCCTTCATACCAGGCAACTTGTGGGTTTTTCCAGTGGTGCAAGGAGCCTTCCACGGCAACCAAGAATCAAGTGAGTGCCTCTAAAGTCTACGGT
AACACACGTGACACGAGCAAAAGCGGTGCTGTGACTGTGAGAACTGGTTCTTCCAGTTCCTGTTATAAATGTGGAGGTGAAGGGCATTGGGCTAGAGACTGCTCGCAGTC
ACTTGCATCATCAAATCCTCCTTCAGAGTTTGGCAGAAGTGAATCTTCTTCAGTTGGAACCTGTTTCAAATGTGGTAAGCCTGGCCATTGGGCGAGGGACTGCTCTAATT
GTTAATAATAGGTACTGACCCTCTGGCTGCTTCTGCAATAGGCTGTTTCAAGGTTTTTAGCAGTTGTTTAAGCTTGTAAATACTAAATTCACAAGTCCAGGATAAGTCAT
CTGACATATCTGCTTATCTGGTACACTCTTCTATTTTGAAGTTCACATTTACTCATACTTGAGTCTCGATATGGGTTAGCTT
Protein sequenceShow/hide protein sequence
MKFEAKRNFDFDLEEDNDEDFLSAVAAAEAVALASKRRKIPNHTIDPPKNAVAEVSDKVPPNVDAEGIYIAALKGNPILLSQLCTWKANSGNKGSISANTTAQSEGGGSC
FKCGKLGHWARDCDAPGGGGSFSASGNDTSVAEKACPCGLGVCSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVTNLMTYGSQNRASSSSFSDLQCPCGAGSC
IILTAKTGENVGQQFYRCPSYQATCGFFQWCKEPSTATKNQVSASKVYGNTRDTSKSGAVTVRTGSSSSCYKCGGEGHWARDCSQSLASSNPPSEFGRSESSSVGTCFKC
GKPGHWARDCSNC