; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi07G008230 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G008230
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPhotosystem II 10 kDa polypeptide, chloroplastic
Genome locationchr07:9169882..9172562
RNA-Seq ExpressionLsi07G008230
SyntenyLsi07G008230
Gene Ontology termsGO:0010270 - photosystem II oxygen evolving complex assembly (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009654 - photosystem II oxygen evolving complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR006814 - Photosystem II PsbR


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008451826.1 PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo]1.1e-6394.2Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSA+GLPSLARNS  FKV ASGGKKIKTDKPYGINGSMNLRDG+DASGRK KGKGVYQ+VDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        +GDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

XP_022136536.1 photosystem II 10 kDa polypeptide, chloroplastic [Momordica charantia]8.9e-6697.1Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSAKGLPSLAR S  FKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

XP_022931545.1 photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita moschata]8.3e-6494.2Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEK+A+G+PSLAR S  FKVEASGGKKIKTDKPYGINGSMNLRDG+DASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSAL Q
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

XP_023553544.1 photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita pepo subsp. pepo]2.9e-6494.93Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEK+A+G+PSLAR S  FKVEASGGKKIKTDKPYGINGSMNLRDG+DASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

XP_038876356.1 photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida]7.3e-6898.55Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSAKGLPSLARNS+PFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

TrEMBL top hitse value%identityAlignment
A0A0A0KXH3 Photosystem II 10 kDa polypeptide, chloroplastic5.3e-6494.2Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSA GLPSLAR S  FKV ASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        +GDVYVGGTTGLAIWA TLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

A0A5D3CXX1 Photosystem II 10 kDa polypeptide, chloroplastic5.3e-6494.2Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSA+GLPSLARNS  FKV ASGGKKIKTDKPYGINGSMNLRDG+DASGRK KGKGVYQ+VDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        +GDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

A0A6J1C3S3 Photosystem II 10 kDa polypeptide, chloroplastic4.3e-6697.1Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKSAKGLPSLAR S  FKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

A0A6J1EZP8 Photosystem II 10 kDa polypeptide, chloroplastic4.0e-6494.2Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEK+A+G+PSLAR S  FKVEASGGKKIKTDKPYGINGSMNLRDG+DASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSAL Q
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

A0A6J1JDA0 Photosystem II 10 kDa polypeptide, chloroplastic4.0e-6494.2Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEK+A+G+PSLAR S  FKVEASGGKKIKTDKPYGINGSMNLRDG+DASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSAL Q
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

SwissProt top hitse value%identityAlignment
P06183 Photosystem II 10 kDa polypeptide, chloroplastic1.5e-5582.73Show/hide
Query:  MAASVMTSVSLKPAPFTVEK-SAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWS
        MA++VM+S+SLKP  FT+EK S KGLPSLAR+S  FKV ASG KK+KTDKPYGINGSM LRDG+DASGRK KGKGVYQYVDKYGANVDGYSPIY+T +WS
Subjt:  MAASVMTSVSLKPAPFTVEK-SAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        PSGDVYVGGTTGLAIWAVTL G+LAGGALLVYNTSAL Q
Subjt:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

P27202 Photosystem II 10 kDa polypeptide, chloroplastic2.0e-5279.29Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-SAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDW
        MAASVM +SV+LKPA FTVEK +A+GLPSL R    FK+ ASG KKIKTDKP+GINGSM+LRDG+DASGRKGKG GVY+YVDKYGANVDGYSPIY+  +W
Subjt:  MAASVM-TSVSLKPAPFTVEK-SAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDW

Query:  SPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        S SGDVY GG TGLAIWAVTLAG+LAGGALLVYNTSAL Q
Subjt:  SPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

P49108 Photosystem II 10 kDa polypeptide, chloroplastic4.9e-5178.01Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-SAKGLPSLARNS-IPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKD
        MAASVM +SV+LKPA FTVEK SA+GLPSL R S   F++ ASG KKIKTDKP+G+NGSM+LRDG+DASGRKGKG GVY++VDKYGANVDGYSPIY+  +
Subjt:  MAASVM-TSVSLKPAPFTVEK-SAKGLPSLARNS-IPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKD

Query:  WSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        WS SGDVY GG TGLAIWAVTLAG+LAGGALLVYNTSAL Q
Subjt:  WSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

Q40163 Photosystem II 10 kDa polypeptide, chloroplastic5.6e-5582.01Show/hide
Query:  MAASVMTSVSLKPAPFTVEK-SAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWS
        MA++VM+S+SLKP  FT+EK S KGLPSL R+S  FKV ASG KK+KTDKPYGINGSM LRDG+DASGRK KGKGVYQYVDKYGANVDGYSPIY+T +WS
Subjt:  MAASVMTSVSLKPAPFTVEK-SAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        PSGDVYVGGTTGLAIWAVTL G+LAGGALLVYNTSAL Q
Subjt:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

Q40519 Photosystem II 10 kDa polypeptide, chloroplastic5.1e-5682.01Show/hide
Query:  MAASVMTSVSLKPAPFTVEKSA-KGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWS
        MA++VM   SLKPAPF+VEK+A KGLPSLAR+S  F+V+ASG KK+KTDKPYGINGSM+LRDG+DASGRK KGKGVYQ+VDKYGANVDGYSPIY+T DWS
Subjt:  MAASVMTSVSLKPAPFTVEKSA-KGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        PSGDVYVGGTTGLAIWAVTL G+LAGGALLV+NTSAL Q
Subjt:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ

Arabidopsis top hitse value%identityAlignment
AT1G79040.1 photosystem II subunit R1.4e-5379.29Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-SAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDW
        MAASVM +SV+LKPA FTVEK +A+GLPSL R    FK+ ASG KKIKTDKP+GINGSM+LRDG+DASGRKGKG GVY+YVDKYGANVDGYSPIY+  +W
Subjt:  MAASVM-TSVSLKPAPFTVEK-SAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDW

Query:  SPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ
        S SGDVY GG TGLAIWAVTLAG+LAGGALLVYNTSAL Q
Subjt:  SPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALVQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCCTCGGTGATGACCTCGGTGAGTCTCAAACCAGCTCCCTTCACCGTCGAGAAATCGGCGAAAGGTCTTCCATCTCTGGCGAGAAACTCCATCCCCTTCAAGGT
CGAGGCCAGTGGCGGGAAGAAGATCAAGACCGACAAACCCTACGGAATCAATGGTTCGATGAACTTGAGGGATGGACTTGATGCATCGGGAAGGAAGGGGAAGGGAAAGG
GAGTGTACCAATATGTCGACAAGTACGGGGCCAATGTCGATGGCTACAGTCCCATCTACGACACCAAAGACTGGTCTCCAAGTGGTGACGTCTATGTTGGTGGTACTACT
GGGTTGGCCATTTGGGCAGTGACCTTGGCTGGCCTTCTTGCTGGAGGTGCTCTTCTTGTGTACAACACCAGTGCTTTGGTGCAGTAG
mRNA sequenceShow/hide mRNA sequence
AAATTTACGTGGTCTTAGTTTTACAAGACATTAAAGACAAAATACATTACATTTTAGAAATCAATTAAAAAAATCAAAGCGAAAGATATCACAGCCGTTAAAGCAAAGAT
CAACGGCCATGTTTGAACTTCAACAGAAGCGGCTAAAATAGATCGCGAAAAGATTCCGATAACACAATAGGATTATATCCAGATTACCGCCATTCATGGATTGCCACGTG
TCGCCCTCCCAATCACATTTCTCAGATTATCAAGCTCTGTCTTCCGTTTTGCGCCATTGCAGATTTTCGAGCTAAAGAAGAAGAGCCATTGCAGATTTTCGAGCTAAAGA
AGAAGAAGAAGAAGAAGCTCATCGATCGGAAATGGCGGCCTCGGTGATGACCTCGGTGAGTCTCAAACCAGCTCCCTTCACCGTCGAGAAATCGGCGAAAGGTCTTCCAT
CTCTGGCGAGAAACTCCATCCCCTTCAAGGTCGAGGCCAGTGGCGGGAAGAAGATCAAGACCGACAAACCCTACGGAATCAATGGTTCGATGAACTTGAGGGATGGACTT
GATGCATCGGGAAGGAAGGGGAAGGGAAAGGGAGTGTACCAATATGTCGACAAGTACGGGGCCAATGTCGATGGCTACAGTCCCATCTACGACACCAAAGACTGGTCTCC
AAGTGGTGACGTCTATGTTGGTGGTACTACTGGGTTGGCCATTTGGGCAGTGACCTTGGCTGGCCTTCTTGCTGGAGGTGCTCTTCTTGTGTACAACACCAGTGCTTTGG
TGCAGTAGCTGGAGAAAAGTTAAAGTCTGTTTTCTTTTTCACATTAGTTTTTGTAGCATGTTATTATGAACAACATTATTATTAAGAAATTCTCTGTGTAATTATCTGGA
CAATTGCGTCATAAATGCTTGGTAAGATAATTCTTCTGTCTCCCATCTTTTCCTTTTGTTCTTTCCTTTACTCTGTATATTGGGGGCGAAACCGAGTTTGAAATCACTTT
TGGAAATACTACTTGTACTCAACTTAACACGAGATGAAAAGAAAGAAGGAAAGAACGGAAAGAACTCTTCAATTTAGAGTGAAATACTCCAAATGAAGAAACAAGTTGTT
ATTTATAGACTAACAACTTAGTAACTCTACAAA
Protein sequenceShow/hide protein sequence
MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSIPFKVEASGGKKIKTDKPYGINGSMNLRDGLDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTT
GLAIWAVTLAGLLAGGALLVYNTSALVQ