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Lsi07G008480 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G008480
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA-directed RNA polymerase subunit beta''
Genome locationchr07:9532015..9532346
RNA-Seq ExpressionLsi07G008480
SyntenyLsi07G008480
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR007081 - RNA polymerase Rpb1, domain 5
IPR008896 - Protein TIC214


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QFQ48881.1 RNA polymerase beta' subunit [Phyllagathis rotundifolia]1.1e-1094.59Show/hide
Query:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPL
        II GQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPL
Subjt:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPL
TYH21951.1 hypothetical protein ES288_A04G087200v1, partial [Gossypium darwinii]1.1e-1094.59Show/hide
Query:  SIIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAP
        SII GQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAP
Subjt:  SIIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAP
YP_009319635.1 RNA polymerase beta'' subunit [Rhynchanthera bracteata]1.1e-1094.59Show/hide
Query:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPL
        II GQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPL
Subjt:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPL
YP_009668723.1 RNA polymerase subunit beta [Microlicia cogniauxiana]1.1e-1094.59Show/hide
Query:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPL
        II GQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPL
Subjt:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPL
YP_009763034.1 RNA polymerase beta'' subunit [Mallotus peltatus]1.1e-1094.59Show/hide
Query:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPL
        II GQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPL
Subjt:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPL
TrEMBL top hitse value%identityAlignment
A0A1I9VX13 DNA-directed RNA polymerase subunit beta''5.4e-1194.59Show/hide
Query:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPL
        II GQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPL
Subjt:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPL
A0A4Y5PN73 DNA-directed RNA polymerase subunit beta''5.4e-1194.59Show/hide
Query:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPL
        II GQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPL
Subjt:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPL
A0A5D2GVT8 DNA-directed RNA polymerase (Fragment)5.4e-1194.59Show/hide
Query:  SIIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAP
        SII GQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAP
Subjt:  SIIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAP
A0A5P8H127 DNA-directed RNA polymerase subunit beta''5.4e-1194.59Show/hide
Query:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPL
        II GQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPL
Subjt:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPL
A0A6G9UHD8 DNA-directed RNA polymerase subunit beta''5.4e-1194.59Show/hide
Query:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPL
        II GQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPL
Subjt:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPL
SwissProt top hitse value%identityAlignment
A4QJA5 DNA-directed RNA polymerase subunit beta''4.2e-1394.44Show/hide
Query:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAP
        II GQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAP
Subjt:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAP
A4QJI9 DNA-directed RNA polymerase subunit beta''4.2e-1394.44Show/hide
Query:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAP
        II GQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAP
Subjt:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAP
A4QK08 DNA-directed RNA polymerase subunit beta''4.2e-1394.44Show/hide
Query:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAP
        II GQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAP
Subjt:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAP
Q3V544 DNA-directed RNA polymerase subunit beta''4.2e-1394.44Show/hide
Query:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAP
        II GQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAP
Subjt:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAP
Q4VZP3 DNA-directed RNA polymerase subunit beta''3.2e-1397.22Show/hide
Query:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAP
        II GQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAP
Subjt:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAP
Arabidopsis top hitse value%identityAlignment
AT2G07739.1 Ycf1 protein8.2e-0441.56Show/hide
Query:  GEPGTQLTLRTFHTGGVFTGGTAEHIR---AP--LALGRPHTITVLALPYLLFQKVMGYSYSTSLDNAQGSRLSSRS
        GE GT+  +    T G   G     I    AP  LALGRPHTITVLALPYLLF      ++    D    +R   R+
Subjt:  GEPGTQLTLRTFHTGGVFTGGTAEHIR---AP--LALGRPHTITVLALPYLLFQKVMGYSYSTSLDNAQGSRLSSRS
ATCG00170.1 DNA-directed RNA polymerase family protein3.0e-1494.44Show/hide
Query:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAP
        II GQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAP
Subjt:  IIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAP
ATCG01000.1 Ycf1 protein4.8e-0454.72Show/hide
Query:  GEPGTQLTLRTFHTGGVFTGGTAEHIR---AP--LALGRPHTITVLALPYLLF
        GE GT+  +    T G   G     I    AP  LALGRPHTITVLALPYLLF
Subjt:  GEPGTQLTLRTFHTGGVFTGGTAEHIR---AP--LALGRPHTITVLALPYLLF
ATCG01130.1 Ycf1 protein4.8e-0454.72Show/hide
Query:  GEPGTQLTLRTFHTGGVFTGGTAEHIR---AP--LALGRPHTITVLALPYLLF
        GE GT+  +    T G   G     I    AP  LALGRPHTITVLALPYLLF
Subjt:  GEPGTQLTLRTFHTGGVFTGGTAEHIR---AP--LALGRPHTITVLALPYLLF
ATMG00370.1 Ycf1 protein8.2e-0441.56Show/hide
Query:  GEPGTQLTLRTFHTGGVFTGGTAEHIR---AP--LALGRPHTITVLALPYLLFQKVMGYSYSTSLDNAQGSRLSSRS
        GE GT+  +    T G   G     I    AP  LALGRPHTITVLALPYLLF      ++    D    +R   R+
Subjt:  GEPGTQLTLRTFHTGGVFTGGTAEHIR---AP--LALGRPHTITVLALPYLLFQKVMGYSYSTSLDNAQGSRLSSRS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTAGTATTATTGTGGGTCAATCTATTGGAGAACCGGGTACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGGACTGCAGAACATATACG
AGCTCCTCTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGCTCTACCGTATCTTTTGTTCCAGAAGGTAATGGGTTACTCCTACAGCACGTCCTTGGACAATGCTC
AAGGCTCTAGGCTGAGTAGCAGGAGCAACTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGTAGTATTATTGTGGGTCAATCTATTGGAGAACCGGGTACTCAACTAACATTAAGAACTTTTCATACCGGCGGAGTATTCACAGGGGGGACTGCAGAACATATACG
AGCTCCTCTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGCTCTACCGTATCTTTTGTTCCAGAAGGTAATGGGTTACTCCTACAGCACGTCCTTGGACAATGCTC
AAGGCTCTAGGCTGAGTAGCAGGAGCAACTTTTAA
Protein sequenceShow/hide protein sequence
MRSIIVGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPLALGRPHTITVLALPYLLFQKVMGYSYSTSLDNAQGSRLSSRSNF