CuGenDBv2

Gene ID	Lsi07G008550
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	leucine-rich repeat extensin-like protein 2 isoform X1
Genome location	chr07:9655431..9655897
RNA-Seq Expression	Lsi07G008550
Synteny	Lsi07G008550
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039065.1 synaptojanin-1 [Cucumis melo var. makuwa]

1.9e-26

93.85

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Query:  VYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGLLSKYITAPINP
        VYFVLEKPVTELLPHIKRLEFDINGELDIP++KVSILSMHD+GESNRTYVVFGLLS+YITAPINP
Subjt:  VYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGLLSKYITAPINP

XP_004149972.2 uncharacterized protein LOC101222031 isoform X2 [Cucumis sativus]

4.9e-27

95.38

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Query:  VYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGLLSKYITAPINP
        VYFVLEKPVTELLPHIKRLEFDINGELDIPN+KVSILSMHD+GESNRTYVVFGLLS+YITAPINP
Subjt:  VYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGLLSKYITAPINP

XP_008456084.1 PREDICTED: uncharacterized protein LOC103496125 isoform X1 [Cucumis melo]

1.9e-26

93.85

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Query:  VYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGLLSKYITAPINP
        VYFVLEKPVTELLPHIKRLEFDINGELDIP++KVSILSMHD+GESNRTYVVFGLLS+YITAPINP
Subjt:  VYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGLLSKYITAPINP

XP_011651267.1 uncharacterized protein LOC101222031 isoform X1 [Cucumis sativus]

4.9e-27

95.38

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Query:  VYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGLLSKYITAPINP
        VYFVLEKPVTELLPHIKRLEFDINGELDIPN+KVSILSMHD+GESNRTYVVFGLLS+YITAPINP
Subjt:  VYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGLLSKYITAPINP

XP_038891823.1 uncharacterized protein LOC120081196 isoform X1 [Benincasa hispida]

8.3e-27

83.12

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Query:  KGKSKICRCSSVVYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGLLSKYITAPINP
        K   K+C  ++ VYFVL+KPV ELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGLLS+YIT PINP
Subjt:  KGKSKICRCSSVVYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGLLSKYITAPINP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L6J0 Uncharacterized protein

2.4e-27

95.38

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Query:  VYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGLLSKYITAPINP
        VYFVLEKPVTELLPHIKRLEFDINGELDIPN+KVSILSMHD+GESNRTYVVFGLLS+YITAPINP
Subjt:  VYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGLLSKYITAPINP

A0A1S3C2E0 uncharacterized protein LOC103496125 isoform X1

9.0e-27

93.85

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Query:  VYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGLLSKYITAPINP
        VYFVLEKPVTELLPHIKRLEFDINGELDIP++KVSILSMHD+GESNRTYVVFGLLS+YITAPINP
Subjt:  VYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGLLSKYITAPINP

A0A5A7TCD6 Synaptojanin-1

9.0e-27

93.85

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Query:  VYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGLLSKYITAPINP
        VYFVLEKPVTELLPHIKRLEFDINGELDIP++KVSILSMHD+GESNRTYVVFGLLS+YITAPINP
Subjt:  VYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGLLSKYITAPINP

A0A6J1E5G3 uncharacterized protein LOC111430758 isoform X1

2.6e-26

92.31

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Query:  VYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGLLSKYITAPINP
        VYFVLEKPV ELLPHIKRLEFDINGELDIPN+KVS+LSMHDLGESNRTYVVFGLLS+YIT PINP
Subjt:  VYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGLLSKYITAPINP

A0A6J1J689 uncharacterized protein LOC111482968 isoform X1

2.6e-26

92.31

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Query:  VYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGLLSKYITAPINP
        VYFVLEKPV ELLPHIKRLEFDINGELDIPN+KVS+LSMHDLGESNRTYVVFGLLS+YIT PINP
Subjt:  VYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGLLSKYITAPINP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G10790.1 BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G56590.2)

8.1e-04

40.74

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Query:  FVLEKPVTELLPHIKRLEFDINGELDIP-NLKVSILSMHDLGESNRTYVVFGLL
        F L+KPV+E++ H  ++E DI   + +  N KV++LS++  G SN T V F +L
Subjt:  FVLEKPVTELLPHIKRLEFDINGELDIP-NLKVSILSMHDLGESNRTYVVFGLL

AT3G56590.1 hydroxyproline-rich glycoprotein family protein

9.6e-05

36.36

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Query:  VVYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGL
        V  F + KP++ +  ++ +LE DI  E+  P  KV +L++  LG+ NRT V+F +
Subjt:  VVYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGL

AT3G56590.2 hydroxyproline-rich glycoprotein family protein

9.6e-05

36.36

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Query:  VVYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGL
        V  F + KP++ +  ++ +LE DI  E+  P  KV +L++  LG+ NRT V+F +
Subjt:  VVYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGL

Sequences

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CDS sequence

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ATGCTCTGCAAATGGGGAAAGGGGAAGAGCAAAATCTGCCGTTGCAGCAGCGTCGTATATTTTGTTCTTGAAAAGCCCGTGACCGAGCTTCTCCCTCACATCAAGAGATT
AGAGTTTGATATCAATGGTGAATTAGACATTCCAAACTTGAAGGTTTCCATTCTATCCATGCATGATTTAGGTGAGTCGAATAGGACTTACGTGGTTTTCGGTCTTCTTT
CTAAATACATAACTGCTCCAATAAATCCA

mRNA sequence

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Protein sequence

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MLCKWGKGKSKICRCSSVVYFVLEKPVTELLPHIKRLEFDINGELDIPNLKVSILSMHDLGESNRTYVVFGLLSKYITAPINP

Lsi07G008550 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome