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Lsi07G008640 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G008640
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionglycine-rich RNA-binding protein GRP2A-like
Genome locationchr07:9791150..9791665
RNA-Seq ExpressionLsi07G008640
SyntenyLsi07G008640
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063029.1 hypothetical protein E6C27_scaffold468G001370 [Cucumis melo var. makuwa]1.4e-3659.38Show/hide
Query:  LIGGGCKKKETSHELPTPSVSIGRSRPLWPPHTYHDVEFGQGFRTYRQDVSQRSEQS--------------------------------TR---------
        +IGGG KKK+ +H LPTPSVSIGRSRPL    TY DVEFGQG RTYRQD + RSEQS                                TR         
Subjt:  LIGGGCKKKETSHELPTPSVSIGRSRPLWPPHTYHDVEFGQGFRTYRQDVSQRSEQS--------------------------------TR---------

Query:  --PETQGSRRSERIDRQD-TRESGIKDGGMAILAGAGAAIATAAAILGLSSDQGEGEDIDGGYVDSRGDDINGSSVYGRGG--DSTGNVSQI
          P+TQGSRRSERIDRQD TRES IKDGGMAILAGAGAAIATAA +LGLSS QG GEDIDGGYVD+ GD  +GS VYG GG  +S GN SQ+
Subjt:  --PETQGSRRSERIDRQD-TRESGIKDGGMAILAGAGAAIATAAAILGLSSDQGEGEDIDGGYVDSRGDDINGSSVYGRGG--DSTGNVSQI

KAE8649249.1 hypothetical protein Csa_015081, partial [Cucumis sativus]3.0e-3954.88Show/hide
Query:  MKPSILIFIICICLIVVVVILCCFRLIGGGCKKKETSHELPTPSVSIGRSRPLWPPHTYHDVEFGQGFRTYRQD--------------------------
        +KPSILI IIC  L+VV  ILCCF +IG G +KK+ +++LPTPSVSIGRSRPL    TY D+EFGQG RTYRQD                          
Subjt:  MKPSILIFIICICLIVVVVILCCFRLIGGGCKKKETSHELPTPSVSIGRSRPLWPPHTYHDVEFGQGFRTYRQD--------------------------

Query:  ----------------VSQRSEQSTRPETQGSRRSERIDRQDTRESGIKDGGMAILAGAGAAIATAAAILGLSSDQGEGEDIDGGYVDSRGDDINGSSVY
                         S+R+E+S  P+TQ SRRSE+IDRQDTRES IKDGGMAILAGAGAAIATAA +LGLSS QG GEDIDG YVD+  D  +G  VY
Subjt:  ----------------VSQRSEQSTRPETQGSRRSERIDRQDTRESGIKDGGMAILAGAGAAIATAAAILGLSSDQGEGEDIDGGYVDSRGDDINGSSVY

Query:  GR--GGDSTGNVSQI
        G   G +S GN SQ+
Subjt:  GR--GGDSTGNVSQI

KAG6600486.1 hypothetical protein SDJN03_05719, partial [Cucurbita argyrosperma subsp. sororia]1.3e-1847.85Show/hide
Query:  MKPSILIFIICICLIVVVVILCCFRLIGGGCKKKETSHELPTPSVSIGRSR---PLWPPHTYHDVEFGQGFRTYRQDVSQRSEQSTRPETQGSRRSE---
        +KPSI+I IIC  L+  VVILCC  +I G  +K  T    PTPS SI   R   P WP  +Y+DVE GQG R +RQD + RSEQS   +  G++RSE   
Subjt:  MKPSILIFIICICLIVVVVILCCFRLIGGGCKKKETSHELPTPSVSIGRSR---PLWPPHTYHDVEFGQGFRTYRQDVSQRSEQSTRPETQGSRRSE---

Query:  -RIDRQDT-----------RESGIKDGGMAILAGAGAAIATAAAILGLSSDQGEGEDIDGGYVDSRGDDINGSSVYGRG-GDSTGN
         R DR  +           + SG KDGGMAI AGAGAA+A AAA LGLSS  G G++  G      GD   G S    G GDS GN
Subjt:  -RIDRQDT-----------RESGIKDGGMAILAGAGAAIATAAAILGLSSDQGEGEDIDGGYVDSRGDDINGSSVYGRG-GDSTGN

XP_022942031.1 glycine-rich RNA-binding protein GRP2A-like [Cucurbita moschata]1.0e-1847.34Show/hide
Query:  MKPSILIFIICICLIVVVVILCCFRLIGGGCKKKETSHELPTPSVSIGRSR----PLWPPHTYHDVEFGQGFRTYRQDVSQRSEQSTRPETQGSRRSE--
        +KPSI+I IIC  L+  VVILCC  +I G  +K  T    PTPS SI   R    P WP  +Y+DVE GQG R YRQD + RSEQS   +  G++RSE  
Subjt:  MKPSILIFIICICLIVVVVILCCFRLIGGGCKKKETSHELPTPSVSIGRSR----PLWPPHTYHDVEFGQGFRTYRQDVSQRSEQSTRPETQGSRRSE--

Query:  --RIDRQDT-----------RESGIKDGGMAILAGAGAAIATAAAILGLSSDQGE--GEDIDGGYVDSRGDDINGSSVYGRGGDSTGN
          R DR  +           + SG KDGGMAI AGAGAA+A AAA LGLSS  G+  G + DG + DS   D  G S  G G    G+
Subjt:  --RIDRQDT-----------RESGIKDGGMAILAGAGAAIATAAAILGLSSDQGE--GEDIDGGYVDSRGDDINGSSVYGRGGDSTGN

XP_023543717.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo]1.2e-1947.34Show/hide
Query:  MKPSILIFIICICLIVVVVILCCFRLIGGGCKKKETSHELPTPSVSIGRSR---PLWPPHTYHDVEFGQGFRTYRQDVSQRSEQSTRPETQGSRRSE---
        +KPSI+I IIC  L+  VVILCC  +I G  +K  T    PTPS SI   R   P WP  +Y+DVE GQG R YRQD + RSEQS   +  G++RSE   
Subjt:  MKPSILIFIICICLIVVVVILCCFRLIGGGCKKKETSHELPTPSVSIGRSR---PLWPPHTYHDVEFGQGFRTYRQDVSQRSEQSTRPETQGSRRSE---

Query:  -RIDRQDT-----------RESGIKDGGMAILAGAGAAIATAAAILGLSS-------DQGEGEDIDGGYVDSRGDDI-NGSSVYGRGG
         R DR  +           ++SG KDGGMAILAGAGAA+A AAA +GLSS         G+G   DG   D  GD   NG+   G GG
Subjt:  -RIDRQDT-----------RESGIKDGGMAILAGAGAAIATAAAILGLSS-------DQGEGEDIDGGYVDSRGDDI-NGSSVYGRGG

TrEMBL top hitse value%identityAlignment
A0A0A0L0B2 Uncharacterized protein1.5e-3954.88Show/hide
Query:  MKPSILIFIICICLIVVVVILCCFRLIGGGCKKKETSHELPTPSVSIGRSRPLWPPHTYHDVEFGQGFRTYRQD--------------------------
        +KPSILI IIC  L+VV  ILCCF +IG G +KK+ +++LPTPSVSIGRSRPL    TY D+EFGQG RTYRQD                          
Subjt:  MKPSILIFIICICLIVVVVILCCFRLIGGGCKKKETSHELPTPSVSIGRSRPLWPPHTYHDVEFGQGFRTYRQD--------------------------

Query:  ----------------VSQRSEQSTRPETQGSRRSERIDRQDTRESGIKDGGMAILAGAGAAIATAAAILGLSSDQGEGEDIDGGYVDSRGDDINGSSVY
                         S+R+E+S  P+TQ SRRSE+IDRQDTRES IKDGGMAILAGAGAAIATAA +LGLSS QG GEDIDG YVD+  D  +G  VY
Subjt:  ----------------VSQRSEQSTRPETQGSRRSERIDRQDTRESGIKDGGMAILAGAGAAIATAAAILGLSSDQGEGEDIDGGYVDSRGDDINGSSVY

Query:  GR--GGDSTGNVSQI
        G   G +S GN SQ+
Subjt:  GR--GGDSTGNVSQI

A0A5A7VBP6 Uncharacterized protein6.8e-3759.38Show/hide
Query:  LIGGGCKKKETSHELPTPSVSIGRSRPLWPPHTYHDVEFGQGFRTYRQDVSQRSEQS--------------------------------TR---------
        +IGGG KKK+ +H LPTPSVSIGRSRPL    TY DVEFGQG RTYRQD + RSEQS                                TR         
Subjt:  LIGGGCKKKETSHELPTPSVSIGRSRPLWPPHTYHDVEFGQGFRTYRQDVSQRSEQS--------------------------------TR---------

Query:  --PETQGSRRSERIDRQD-TRESGIKDGGMAILAGAGAAIATAAAILGLSSDQGEGEDIDGGYVDSRGDDINGSSVYGRGG--DSTGNVSQI
          P+TQGSRRSERIDRQD TRES IKDGGMAILAGAGAAIATAA +LGLSS QG GEDIDGGYVD+ GD  +GS VYG GG  +S GN SQ+
Subjt:  --PETQGSRRSERIDRQD-TRESGIKDGGMAILAGAGAAIATAAAILGLSSDQGEGEDIDGGYVDSRGDDINGSSVYGRGG--DSTGNVSQI

A0A6J1CLX2 ctenidin-3-like4.3e-1547.98Show/hide
Query:  MKPSILIFIICICLIVVVVILCCFRLIGGGCKKKETSHELPTPSVSIGRSRPLWPPHTY--HDVEFGQGFRTYRQDVSQRSEQSTRPETQGSRRSERIDR
        MKP   I IIC  +I  VVILCC  +I G  KKKET    P  S +IG SR  WP  TY  HD+E GQG RT                          +R
Subjt:  MKPSILIFIICICLIVVVVILCCFRLIGGGCKKKETSHELPTPSVSIGRSRPLWPPHTY--HDVEFGQGFRTYRQDVSQRSEQSTRPETQGSRRSERIDR

Query:  QDTRESGIKDGGMAILAGAGAAIATAAAILGLSSDQGE---GEDI-DGGYVDSRGDDINGSSVYGRGGDSTGN
        Q  R SGIKDGGMAILAGAG AIATAA I GLSS+  E   G+D  DGG  D  G D  GS   G GG   G+
Subjt:  QDTRESGIKDGGMAILAGAGAAIATAAAILGLSSDQGE---GEDI-DGGYVDSRGDDINGSSVYGRGGDSTGN

A0A6J1FMR9 glycine-rich RNA-binding protein GRP2A-like4.9e-1947.34Show/hide
Query:  MKPSILIFIICICLIVVVVILCCFRLIGGGCKKKETSHELPTPSVSIGRSR----PLWPPHTYHDVEFGQGFRTYRQDVSQRSEQSTRPETQGSRRSE--
        +KPSI+I IIC  L+  VVILCC  +I G  +K  T    PTPS SI   R    P WP  +Y+DVE GQG R YRQD + RSEQS   +  G++RSE  
Subjt:  MKPSILIFIICICLIVVVVILCCFRLIGGGCKKKETSHELPTPSVSIGRSR----PLWPPHTYHDVEFGQGFRTYRQDVSQRSEQSTRPETQGSRRSE--

Query:  --RIDRQDT-----------RESGIKDGGMAILAGAGAAIATAAAILGLSSDQGE--GEDIDGGYVDSRGDDINGSSVYGRGGDSTGN
          R DR  +           + SG KDGGMAI AGAGAA+A AAA LGLSS  G+  G + DG + DS   D  G S  G G    G+
Subjt:  --RIDRQDT-----------RESGIKDGGMAILAGAGAAIATAAAILGLSSDQGE--GEDIDGGYVDSRGDDINGSSVYGRGGDSTGN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACCTTCCATCCTCATTTTCATAATTTGCATTTGTTTAATAGTTGTTGTTGTGATTTTATGTTGCTTTCGTTTAATTGGAGGTGGTTGCAAAAAGAAAGAAACATC
ACATGAATTACCTACTCCAAGTGTAAGTATTGGACGTTCAAGGCCATTATGGCCACCTCATACGTACCACGATGTCGAATTCGGGCAAGGTTTTCGAACCTACAGACAAG
ACGTGTCTCAAAGAAGCGAACAGAGCACTCGACCGGAAACACAAGGTTCGCGAAGAAGCGAACGAATAGACCGACAAGATACTCGAGAAAGCGGAATCAAGGACGGTGGG
ATGGCCATCTTGGCCGGAGCAGGCGCTGCTATAGCTACTGCAGCTGCTATCCTTGGTTTAAGTAGTGATCAAGGAGAAGGAGAAGATATCGATGGTGGCTATGTCGATAG
TCGTGGTGATGATATCAATGGCAGTAGCGTTTACGGTCGTGGTGGCGACAGCACTGGCAATGTTTCTCAAATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAACCTTCCATCCTCATTTTCATAATTTGCATTTGTTTAATAGTTGTTGTTGTGATTTTATGTTGCTTTCGTTTAATTGGAGGTGGTTGCAAAAAGAAAGAAACATC
ACATGAATTACCTACTCCAAGTGTAAGTATTGGACGTTCAAGGCCATTATGGCCACCTCATACGTACCACGATGTCGAATTCGGGCAAGGTTTTCGAACCTACAGACAAG
ACGTGTCTCAAAGAAGCGAACAGAGCACTCGACCGGAAACACAAGGTTCGCGAAGAAGCGAACGAATAGACCGACAAGATACTCGAGAAAGCGGAATCAAGGACGGTGGG
ATGGCCATCTTGGCCGGAGCAGGCGCTGCTATAGCTACTGCAGCTGCTATCCTTGGTTTAAGTAGTGATCAAGGAGAAGGAGAAGATATCGATGGTGGCTATGTCGATAG
TCGTGGTGATGATATCAATGGCAGTAGCGTTTACGGTCGTGGTGGCGACAGCACTGGCAATGTTTCTCAAATCTGA
Protein sequenceShow/hide protein sequence
MKPSILIFIICICLIVVVVILCCFRLIGGGCKKKETSHELPTPSVSIGRSRPLWPPHTYHDVEFGQGFRTYRQDVSQRSEQSTRPETQGSRRSERIDRQDTRESGIKDGG
MAILAGAGAAIATAAAILGLSSDQGEGEDIDGGYVDSRGDDINGSSVYGRGGDSTGNVSQI