CuGenDBv2

Gene ID	Lsi07G008880
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3A .
Genome location	chr07:10179419..10180466
RNA-Seq Expression	Lsi07G008880
Synteny	Lsi07G008880
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0044831.1 uncharacterized protein E6C27_scaffold74G001230 [Cucumis melo var. makuwa]

4.6e-28

81.37

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Query:  MEQSRADSS-TSIETEGQIPGTSQNSTTCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQ
        MEQS ADSS TSIETE QIP TS NSTT S   +EDCTKTQS     +I +AIEVVEKDSLAIAESFTSLFASLR VLSEVTSNSIDHMHCFNDAAGRLQ
Subjt:  MEQSRADSS-TSIETEGQIPGTSQNSTTCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQ

Query:  ES
        ES
Subjt:  ES

TYK16633.1 uncharacterized protein E5676_scaffold21G004610 [Cucumis melo var. makuwa]

4.6e-28

81.37

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Query:  MEQSRADSS-TSIETEGQIPGTSQNSTTCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQ
        MEQS ADSS TSIETE QIP TS NSTT S   +EDCTKTQS     +I +AIEVVEKDSLAIAESFTSLFASLR VLSEVTSNSIDHMHCFNDAAGRLQ
Subjt:  MEQSRADSS-TSIETEGQIPGTSQNSTTCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQ

Query:  ES
        ES
Subjt:  ES

XP_004146523.1 uncharacterized protein LOC101210623 [Cucumis sativus]

4.1e-29

83.33

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Query:  MEQSRADSS-TSIETEGQIPGTSQNSTTCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQ
        MEQS ADSS TSIETE QIP TS NSTT S  VIEDCTKTQS     +I KAIEVVEKDSLA+AESFTSLFASLR VLSEVTSNSIDHMHCFNDAAGRLQ
Subjt:  MEQSRADSS-TSIETEGQIPGTSQNSTTCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQ

Query:  ES
        ES
Subjt:  ES

XP_008452025.1 PREDICTED: uncharacterized protein LOC103493156 [Cucumis melo]

4.6e-28

81.37

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Query:  MEQSRADSS-TSIETEGQIPGTSQNSTTCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQ
        MEQS ADSS TSIETE QIP TS NSTT S   +EDCTKTQS     +I +AIEVVEKDSLAIAESFTSLFASLR VLSEVTSNSIDHMHCFNDAAGRLQ
Subjt:  MEQSRADSS-TSIETEGQIPGTSQNSTTCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQ

Query:  ES
        ES
Subjt:  ES

XP_038878050.1 uncharacterized protein LOC120070236 [Benincasa hispida]

3.3e-34

91.67

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Query:  MEQSRADSSTSIETEGQIPGTSQNSTTCSVTVIEDCTKTQSEIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQES
        MEQSRADSSTSIE   QI GTS NS TCS  VIEDCTKTQSEIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQES
Subjt:  MEQSRADSSTSIETEGQIPGTSQNSTTCSVTVIEDCTKTQSEIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQES

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWT2 Uncharacterized protein

2.0e-29

83.33

Show/hide

Query:  MEQSRADSS-TSIETEGQIPGTSQNSTTCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQ
        MEQS ADSS TSIETE QIP TS NSTT S  VIEDCTKTQS     +I KAIEVVEKDSLA+AESFTSLFASLR VLSEVTSNSIDHMHCFNDAAGRLQ
Subjt:  MEQSRADSS-TSIETEGQIPGTSQNSTTCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQ

Query:  ES
        ES
Subjt:  ES

A0A1S3BTP0 uncharacterized protein LOC103493156

2.2e-28

81.37

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Query:  MEQSRADSS-TSIETEGQIPGTSQNSTTCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQ
        MEQS ADSS TSIETE QIP TS NSTT S   +EDCTKTQS     +I +AIEVVEKDSLAIAESFTSLFASLR VLSEVTSNSIDHMHCFNDAAGRLQ
Subjt:  MEQSRADSS-TSIETEGQIPGTSQNSTTCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQ

Query:  ES
        ES
Subjt:  ES

A0A5A7TTI6 Uncharacterized protein

2.2e-28

81.37

Show/hide

Query:  MEQSRADSS-TSIETEGQIPGTSQNSTTCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQ
        MEQS ADSS TSIETE QIP TS NSTT S   +EDCTKTQS     +I +AIEVVEKDSLAIAESFTSLFASLR VLSEVTSNSIDHMHCFNDAAGRLQ
Subjt:  MEQSRADSS-TSIETEGQIPGTSQNSTTCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQ

Query:  ES
        ES
Subjt:  ES

A0A5D3CXL4 Uncharacterized protein

2.2e-28

81.37

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Query:  MEQSRADSS-TSIETEGQIPGTSQNSTTCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQ
        MEQS ADSS TSIETE QIP TS NSTT S   +EDCTKTQS     +I +AIEVVEKDSLAIAESFTSLFASLR VLSEVTSNSIDHMHCFNDAAGRLQ
Subjt:  MEQSRADSS-TSIETEGQIPGTSQNSTTCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQ

Query:  ES
        ES
Subjt:  ES

A0A6J1EUG1 uncharacterized protein LOC111437668

3.5e-26

73.08

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Query:  MEQSRADSSTSIETEGQIPGTSQNST---TCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGR
        MEQS +DSS+SIE   QIP TS NS    T + +V+EDCT+ +S     EIFKAI+VVEKDSLAIAESFTSLFASLR  LSEVTSNSIDHMHCFNDAAGR
Subjt:  MEQSRADSSTSIETEGQIPGTSQNST---TCSVTVIEDCTKTQS-----EIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGR

Query:  LQES
        LQES
Subjt:  LQES

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G23330.1 BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3A (TAIR:AT4G11420.1)

6.8e-14

50.55

Show/hide

Query:  ADSSTSIETEGQIPGTSQNSTTCSVTVIEDCTKTQSEIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQES
        ADS+  I  E    G S+ S+             Q EI K +  VEKDS AIAESF+SLF SLR  LSE T +S+DHM CF +AAGRLQE+
Subjt:  ADSSTSIETEGQIPGTSQNSTTCSVTVIEDCTKTQSEIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQES

AT4G23330.2 unknown protein

6.8e-14

50.55

Show/hide

Query:  ADSSTSIETEGQIPGTSQNSTTCSVTVIEDCTKTQSEIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQES
        ADS+  I  E    G S+ S+             Q EI K +  VEKDS AIAESF+SLF SLR  LSE T +S+DHM CF +AAGRLQE+
Subjt:  ADSSTSIETEGQIPGTSQNSTTCSVTVIEDCTKTQSEIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQES

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAGCAATCTCGAGCGGATTCTTCGACGAGCATCGAAACTGAAGGTCAGATTCCGGGGACATCCCAAAATTCGACCACTTGTTCTGTGACTGTCATTGAAGATTGCAC
CAAAACCCAATCCGAGATTTTCAAAGCCATTGAAGTCGTTGAGAAGGATTCTCTCGCCATTGCTGAGAGCTTCACCTCTCTCTTTGCTTCCCTGCGTTTGGTTCTCTCCG
AGGTCACCAGCAACTCTATTGATCATATGCATTGCTTCAACGATGCTGCAGGGCGCCTTCAAGAATCTGGTAATTTTCTCGTAATAAATTTGGGAAGTGGTTGGTTGCAA
TCAGACTAG

mRNA sequence

Show/hide mRNA sequence

ATTTTGTTGAACTGAGAAGAGAAACTCAAATCTATCTACGAATAAATTGCTGATGGGTGTGTTGAATTTCAATGGTCTGATCCTATTTAGGAAGTCGAAAAGAAACCCAA
TTTTGGAATTGCAGAGAATTTGAAAACTCATCGAGAAATGGAGCAATCTCGAGCGGATTCTTCGACGAGCATCGAAACTGAAGGTCAGATTCCGGGGACATCCCAAAATT
CGACCACTTGTTCTGTGACTGTCATTGAAGATTGCACCAAAACCCAATCCGAGATTTTCAAAGCCATTGAAGTCGTTGAGAAGGATTCTCTCGCCATTGCTGAGAGCTTC
ACCTCTCTCTTTGCTTCCCTGCGTTTGGTTCTCTCCGAGGTCACCAGCAACTCTATTGATCATATGCATTGCTTCAACGATGCTGCAGGGCGCCTTCAAGAATCTGGTAA
TTTTCTCGTAATAAATTTGGGAAGTGGTTGGTTGCAATCAGACTAG

Protein sequence

Show/hide protein sequence

MEQSRADSSTSIETEGQIPGTSQNSTTCSVTVIEDCTKTQSEIFKAIEVVEKDSLAIAESFTSLFASLRLVLSEVTSNSIDHMHCFNDAAGRLQESGNFLVINLGSGWLQ
SD

Lsi07G008880 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome