CuGenDBv2

Gene ID	Lsi07G008980
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Transcription initiation factor IIE subunit beta
Genome location	chr07:10262891..10268227
RNA-Seq Expression	Lsi07G008980
Synteny	Lsi07G008980
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0006413 - translational initiation (biological process) GO:0005673 - transcription factor TFIIE complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	IPR003166 - Transcription factor TFIIE beta subunit, DNA-binding domain IPR016656 - Transcription initiation factor TFIIE, beta subunit IPR040501 - TFA2, Winged helix domain 2

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008452012.1 PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo]

1.9e-144

98.19

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Query:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQEQLDRFKKQQERCQ+TLSGIAASKS SK TPKFTPAPAASIARP APAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
Subjt:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDK+QLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

XP_011653191.1 general transcription factor IIE subunit 2 [Cucumis sativus]

1.7e-145

98.19

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Query:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQEQLDRFKKQQERCQ+TLSGIAASKS SK TPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
Subjt:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDK+QLLYL+RKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

XP_022931511.1 general transcription factor IIE subunit 2-like [Cucurbita moschata]

1.0e-137

94.22

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Query:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQE+LDRFK+QQERCQTTLSGIAASK+ +  TP+FTPAPAAS  RPPAPA+KFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+C
Subjt:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAV+DSLRNNPKVHYDGRRFSYKSKHDLKDK+QLLYLIRKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

XP_022984812.1 general transcription factor IIE subunit 2-like [Cucurbita maxima]

4.6e-138

94.58

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Query:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQE+LDRFK+QQERCQTTLSGIAASK+ +  TP+FTPAPAAS  RPPAPA+KFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
Subjt:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAV+DSLRNNPKVHYDGRRFSYKSKHDLKDK+QLLYLIRKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

XP_038906431.1 general transcription factor IIE subunit 2-like [Benincasa hispida]

4.0e-142

97.47

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Query:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQEQLDRFKKQQERCQTTLSGIAA+KSASK TPKFTPAPAAS  RPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
Subjt:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAV+DSLRNNPKVHYDGRRFSYKSKHDLKDK+QLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPK KKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWU5 Transcription initiation factor IIE subunit beta

8.4e-146

98.19

Show/hide

Query:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQEQLDRFKKQQERCQ+TLSGIAASKS SK TPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
Subjt:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDK+QLLYL+RKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

A0A1S3BS95 Transcription initiation factor IIE subunit beta

9.3e-145

98.19

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Query:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQEQLDRFKKQQERCQ+TLSGIAASKS SK TPKFTPAPAASIARP APAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
Subjt:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDK+QLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

A0A5A7TNR4 Transcription initiation factor IIE subunit beta

9.3e-145

98.19

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Query:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQEQLDRFKKQQERCQ+TLSGIAASKS SK TPKFTPAPAASIARP APAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
Subjt:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDK+QLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

A0A6J1ETU7 Transcription initiation factor IIE subunit beta

5.0e-138

94.22

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Query:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQE+LDRFK+QQERCQTTLSGIAASK+ +  TP+FTPAPAAS  RPPAPA+KFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+C
Subjt:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAV+DSLRNNPKVHYDGRRFSYKSKHDLKDK+QLLYLIRKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

A0A6J1J372 Transcription initiation factor IIE subunit beta

2.2e-138

94.58

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Query:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQE+LDRFK+QQERCQTTLSGIAASK+ +  TP+FTPAPAAS  RPPAPA+KFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
Subjt:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAV+DSLRNNPKVHYDGRRFSYKSKHDLKDK+QLLYLIRKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

SwissProt top hits

e value

%identity

Alignment

P79011 Transcription initiation factor IIE subunit beta

2.0e-11

27.21

Show/hide

Query:  ALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPK--FTPAPAA----------SIARPPAPAVKFSNDTERLQHINSIRKSPVG----AQIKRVIDLLL
        +L +QL  FKK+          +A     +KP P+   +P P A          + + P + ++K       L + +    S VG    +Q+   ++ L 
Subjt:  ALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPK--FTPAPAA----------SIARPPAPAVKFSNDTERLQHINSIRKSPVG----AQIKRVIDLLL

Query:  ETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKVHYDGRR--FSYKSKHDLKDKSQLLYLI--RKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL-
        E  +  T E+I  A Y+       + + L+ N +++YD R   F++K  H+++  + LL  +  +K   G+++ +L+D +P+V  +L+ L+  G+V LL 
Subjt:  ETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKVHYDGRR--FSYKSKHDLKDKSQLLYLI--RKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL-

Query:  SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPAT---NTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHL
        +  D    + + ND      VD + +Q++ EI +P   LD+  +L K G+KP +   +T KR  + Q      PK KK K   ++R K+TN HL
Subjt:  SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPAT---NTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHL

Q54KJ8 General transcription factor IIE subunit 2

3.3e-14

26.55

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Query:  FKKQQERCQTTLSGI----AASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLL--LETRQAFTPEQINEACYVD
        FK+ Q +   TL+ I    +++ SA K  PK +    +S A   +     S  T        +++ P    +  +++ L  LE   A T E ++   ++ 
Subjt:  FKKQQERCQTTLSGI----AASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLL--LETRQAFTPEQINEACYVD

Query:  INSNKAVYDSLRNNPKVHYDGR-RFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVD
        I+    + + LRNN K+   G  RFS+K K +++ +  +L L+  +P GI V +L ++Y +   D++ LK + Q++ +   +S  DI +PND R+++ + 
Subjt:  INSNKAVYDSLRNNPKVHYDGR-RFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVD

Query:  DDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
         +L  +++ I+LP +  D+EK+++  G+    +  +   +A+   S+K K ++KK    + TK+TN H+     N
Subjt:  DDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

Arabidopsis top hits

e value

%identity

Alignment

AT4G20330.1 Transcription initiation factor TFIIE, beta subunit

6.5e-98

68.93

Show/hide

Query:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAA-SIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEA
        MAL+EQLD+F KQQ +CQ+TLS IA+S+  +  + +  P PAA +  +P A  VKFS+DTERLQ+IN+IRK+PVGAQIKRVIDLL E R A TPEQINE 
Subjt:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAA-SIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEA

Query:  CYVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQI
        C+VD+++NKAV+DSLR NPK HYDGRRFSYK+ HD+ DK+QLL L+RK+ +GIAV+DLKDAYP+VMEDL+AL ASG ++LLSN  SQEDIAYPND + +I
Subjt:  CYVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQI

Query:  KVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ-HVASSKPK-PKKKKQEISKRTKLTNAHLPELFKN
        KVDD+ K LFR+I +P DMLDVEK+L K G+KPATNTA+RRA AQ H  S+KPK  KKKKQEISKRTKLTNAHLPELF+N
Subjt:  KVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ-HVASSKPK-PKKKKQEISKRTKLTNAHLPELFKN

AT4G21010.1 Transcription initiation factor TFIIE, beta subunit

6.7e-79

59.64

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Query:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MAL+EQLD+F KQQE+CQ+TLS I++S++A   +  + PA A +  +P     KFS +T++LQHI +IR S VGAQ+K VIDLL +TR A+T EQINEAC
Subjt:  MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQV-WLLSNFDSQEDIAYPNDPRIQI
        YVD+++NKAV+DSLR NPKVHYDGRRFSYK+ H++KDK QLL  + K  + I V DLKDAYP+VMEDL++LK+SG++ WLLSN DS+E   Y N+     
Subjt:  YVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQV-WLLSNFDSQEDIAYPNDPRIQI

Query:  KVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ-HVASSKPK-PKKKKQEISKRTKLTNAHLPELFKN
        K+DD+LK LFR+I +P DML+VEK+L K G+KPATN A+RRA  Q H  S+KPK  KKKK+EI+ RTKLTN+H+ ELF++
Subjt:  KVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ-HVASSKPK-PKKKKQEISKRTKLTNAHLPELFKN

Sequences

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CDS sequence

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ATGGCGTTGCAAGAACAACTAGATAGGTTTAAGAAACAGCAAGAAAGATGTCAGACTACTTTGTCTGGCATTGCTGCTTCCAAGTCTGCATCCAAGCCTACACCCAAGTT
TACGCCTGCACCAGCTGCTTCCATTGCAAGACCTCCGGCTCCTGCTGTGAAATTTTCAAATGATACTGAGAGACTTCAACACATTAACAGCATAAGGAAATCCCCAGTCG
GGGCTCAGATCAAGAGGGTTATTGACCTGCTGCTGGAGACAAGGCAAGCCTTTACACCTGAGCAAATCAATGAAGCATGTTATGTTGATATAAATTCAAACAAGGCTGTC
TATGATAGTCTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGTCCAAGCATGACCTGAAGGATAAGAGTCAACTTCTTTACTTGATTAGAAA
ATTTCCAGAAGGCATTGCTGTCATTGATCTCAAGGATGCTTATCCAAGCGTTATGGAGGACTTGCAAGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCCAACTTCG
ATTCACAAGAAGATATTGCATATCCAAACGACCCTCGAATTCAAATCAAGGTAGACGATGATCTGAAGCAACTCTTTCGGGAGATTGAATTACCTCGTGACATGCTTGAT
GTTGAAAAGGATCTGCAGAAGAATGGGATGAAGCCTGCAACCAACACAGCGAAGAGGCGAGCCAATGCACAACATGTAGCATCCTCGAAACCGAAGCCAAAGAAAAAGAA
GCAAGAGATCAGCAAGAGGACTAAGCTCACCAATGCACATCTTCCCGAGCTCTTCAAAAACTAG

mRNA sequence

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CGAGAATTGGTTGGGTTTCTTCATGGACCGACGCCATATCTCATTTTAACCTTCCTCAAAGAAGTCGTCCCCCATCTCTCTCTCTCTTTCCCCCTCGCGCTTTCCCAATT
CCAGCTTCCATCTTCCATCTTCCATCTTCATTCTTCTCGACCTTCATAGCCGCACGAACTGAACTCGATTCAACAATCAACTCCATTACGTATACTAAAAGTTATCGACC
AGCGATCCCACCGTCGTCTTATCCACGGCGGTCAATTCTGGTCTGTCTAACCGATGCAATTTGTGGGTTGAGAATCATTGAAAACTGTGAGGGGATTCAATGGCGTTGCA
AGAACAACTAGATAGGTTTAAGAAACAGCAAGAAAGATGTCAGACTACTTTGTCTGGCATTGCTGCTTCCAAGTCTGCATCCAAGCCTACACCCAAGTTTACGCCTGCAC
CAGCTGCTTCCATTGCAAGACCTCCGGCTCCTGCTGTGAAATTTTCAAATGATACTGAGAGACTTCAACACATTAACAGCATAAGGAAATCCCCAGTCGGGGCTCAGATC
AAGAGGGTTATTGACCTGCTGCTGGAGACAAGGCAAGCCTTTACACCTGAGCAAATCAATGAAGCATGTTATGTTGATATAAATTCAAACAAGGCTGTCTATGATAGTCT
GCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGTCCAAGCATGACCTGAAGGATAAGAGTCAACTTCTTTACTTGATTAGAAAATTTCCAGAAG
GCATTGCTGTCATTGATCTCAAGGATGCTTATCCAAGCGTTATGGAGGACTTGCAAGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCCAACTTCGATTCACAAGAA
GATATTGCATATCCAAACGACCCTCGAATTCAAATCAAGGTAGACGATGATCTGAAGCAACTCTTTCGGGAGATTGAATTACCTCGTGACATGCTTGATGTTGAAAAGGA
TCTGCAGAAGAATGGGATGAAGCCTGCAACCAACACAGCGAAGAGGCGAGCCAATGCACAACATGTAGCATCCTCGAAACCGAAGCCAAAGAAAAAGAAGCAAGAGATCA
GCAAGAGGACTAAGCTCACCAATGCACATCTTCCCGAGCTCTTCAAAAACTAGAGAACCATATAGGCTGGGATGCAACAATCTTTGTTATATGGATAGTTCATGGACTCT
GTATATAGGATTCAACTATCCCTTCTGTTTCGTGTATTGCCTTTTCTTTCCCATGATATCATCATAGAATGAAATGCTCCTGTGGTTTACTTTTGTGTATGTCTTTGATT
TTACATCAATTAATTGAACAAATTGAAATGTAAGATACAGGTTCAATTAAACTAGATAAATGATTTTTGGGAGATGAAATTATGGCATTTGCTTGCTTC

Protein sequence

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MALQEQLDRFKKQQERCQTTLSGIAASKSASKPTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAV
YDSLRNNPKVHYDGRRFSYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLD
VEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

Lsi07G008980 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome