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Lsi07G009720 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G009720
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionGag-pro-like protein
Genome locationchr07:12784439..12787532
RNA-Seq ExpressionLsi07G009720
SyntenyLsi07G009720
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046608.1 uncharacterized protein E6C27_scaffold114G001540 [Cucumis melo var. makuwa]6.3e-3733.17Show/hide
Query:  DDHSIEDFIDFNKEVHKLMDAKILMISQIDPREIEVDMISNSSPYEKISKEGSSIREPLVIHYEEKSN----IEMPKTMIVEMLGPFASKDNRAVPWKYE
        +DHSIED  +F  EV KLM++KIL+I Q+  +EIEV+MI+N+S  EK S E + + +PLVIHYEEKS+    I+ PK M VE+ GPFA KDN AVPWKYE
Subjt:  DDHSIEDFIDFNKEVHKLMDAKILMISQIDPREIEVDMISNSSPYEKISKEGSSIREPLVIHYEEKSN----IEMPKTMIVEMLGPFASKDNRAVPWKYE

Query:  CQFITNNV----SGGMTRSGR--------------------------------YDLSEVFAEKATLVRRKTDDK--------------------------
        CQFIT+NV     GG+TRSGR                                 DLS+VF EK TLV ++TD +                          
Subjt:  CQFITNNV----SGGMTRSGR--------------------------------YDLSEVFAEKATLVRRKTDDK--------------------------

Query:  --------------SFPRKRSFL---------------------------------------------------LKAKYH--------GGQSFRWRSQGV
                      S P ++  L                                                   +K K H         G S    S+  
Subjt:  --------------SFPRKRSFL---------------------------------------------------LKAKYH--------GGQSFRWRSQGV

Query:  --------------------------------------------------------ACLDDLGFIRQ-GAVPSSLHKKVKFNVEGGQAIVYGEEYMFVTK
                                                                +CL    +I   GAVPSSLH+++KF+VEGGQAIVYGEE MFVTK
Subjt:  --------------------------------------------------------ACLDDLGFIRQ-GAVPSSLHKKVKFNVEGGQAIVYGEEYMFVTK

Query:  MSALPYVEAAEEAFECSYR
         S LPYVEA EEA ECSYR
Subjt:  MSALPYVEAAEEAFECSYR

KAA0052108.1 uncharacterized protein E6C27_scaffold578G00960 [Cucumis melo var. makuwa]7.5e-3845.26Show/hide
Query:  REIEVDMISNSSPYEKISKEGSSIREPLVIHYEE----KSNIEMPKTMIVEMLGPFASKDNRAVPWKYECQFITNNVSG----GMTRSGR----------
        +E EV+MI+N+S  EK S E +S+ +PLVIHYEE     S I+ PK M VE+LGPFA KDN  VPWKYEC FIT+NV      G+TRSGR          
Subjt:  REIEVDMISNSSPYEKISKEGSSIREPLVIHYEE----KSNIEMPKTMIVEMLGPFASKDNRAVPWKYECQFITNNVSG----GMTRSGR----------

Query:  ----------------------YDLSEVFAEKATLVRRKTDDKSFPRKRSFLLKAKYHGGQSFRWRSQGVACLDDLGFIRQGAVPSSLHKKVKFNVEGGQ
                               DLS+VF EK TLV ++TD +   +++++                               AVPSSLH+++KF+VEGGQ
Subjt:  ----------------------YDLSEVFAEKATLVRRKTDDKSFPRKRSFLLKAKYHGGQSFRWRSQGVACLDDLGFIRQGAVPSSLHKKVKFNVEGGQ

Query:  AIVYGEEYMFVTKMSALPYVEAAEEAFECSYR
        AIVY EE MFVTK S LPYVEA EEA ECSYR
Subjt:  AIVYGEEYMFVTKMSALPYVEAAEEAFECSYR

KAA0061241.1 uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa]3.5e-3532.7Show/hide
Query:  DDHSIEDFIDFNKEVHKLMDAKILMISQIDPREIEVDMISNSSPYEKISKEGSSIREPLVIHYEEK----SNIEMPKTMIVEMLGPFASKDNRAVPWKYE
        +DHSIED  +F  EV KLMD+KIL+I Q+  +EIEV+MI+N+S  EK S E + + +P VIHYEEK    S I+ PK M VE+ GPFA KDN AVPWKYE
Subjt:  DDHSIEDFIDFNKEVHKLMDAKILMISQIDPREIEVDMISNSSPYEKISKEGSSIREPLVIHYEEK----SNIEMPKTMIVEMLGPFASKDNRAVPWKYE

Query:  CQFITNNV----SGGMTRSGR--------------------------------YDLSEVFAEKATLVRRKTDDK--------------------------
        CQFIT+NV     GG+TRSGR                                 DLS+VF +K TLV ++TD +                          
Subjt:  CQFITNNV----SGGMTRSGR--------------------------------YDLSEVFAEKATLVRRKTDDK--------------------------

Query:  --------------SFPRKRSFL---------------------------------------------------LKAKYH--------GGQSFRWRSQGV
                      S P ++  L                                                   +K K H         G S    S+  
Subjt:  --------------SFPRKRSFL---------------------------------------------------LKAKYH--------GGQSFRWRSQGV

Query:  --------------------------------------------------------ACLDDLGFIRQ-GAVPSSLHKKVKFNVEGGQAIVYGEEYMFVTK
                                                                +CL    +I   GAVPSSLH+++KF+VE GQAIVYGEE MFVTK
Subjt:  --------------------------------------------------------ACLDDLGFIRQ-GAVPSSLHKKVKFNVEGGQAIVYGEEYMFVTK

Query:  MSALPYVEAAEEAFECSYR
         S LPYVEA EEA ECSYR
Subjt:  MSALPYVEAAEEAFECSYR

TYK05801.1 Gag-pro-like protein [Cucumis melo var. makuwa]4.4e-4647.83Show/hide
Query:  MDDHSIEDFIDFNKEVHKLMDAKILMISQIDPREIEVDMISNSSPYEKISKEGSSIREPLVIHYEEKSNI----EMPKTMIVEMLGPFASKDNRAVPWKY
        ++DHSIED  +F  EV KLMDAKIL+I Q+  +EIEV+MI+N+S  EK S + +S+ +PLVIHYEEK +I    + PKTM VE+ GPFA KDN A+PWKY
Subjt:  MDDHSIEDFIDFNKEVHKLMDAKILMISQIDPREIEVDMISNSSPYEKISKEGSSIREPLVIHYEEKSNI----EMPKTMIVEMLGPFASKDNRAVPWKY

Query:  ECQFITNNV----SGGMTRSGR----YD-LSEVFAE--------------------------KATLVRRKTDDKSFPR------------KRSFLLK---
        ECQFIT+NV     GG+TRSGR    YD L + F+E                          KA  +  K  D    R             RS L+K   
Subjt:  ECQFITNNV----SGGMTRSGR----YD-LSEVFAE--------------------------KATLVRRKTDDKSFPR------------KRSFLLK---

Query:  -AKYHGGQSFRWRS-QGVACLDDLGFIRQGAVPSSLHKKVKFNVEGGQAIVYGEEYMFVTKMSALPYVEAAEEAFE
           Y    +   R+  G    DDLGFI+QG   S LHK++KF+V+GGQAIVYGEE MFVTK S LPYVEA EEA E
Subjt:  -AKYHGGQSFRWRS-QGVACLDDLGFIRQGAVPSSLHKKVKFNVEGGQAIVYGEEYMFVTKMSALPYVEAAEEAFE

TYK10942.1 uncharacterized protein E5676_scaffold107G00240 [Cucumis melo var. makuwa]9.8e-3836.73Show/hide
Query:  DHSIEDFIDFNKEVHKLMDAKILMISQIDPREIEVDMISNSSPYEKISKEGSSIREPLVIHYEEK----SNIEMPKTMIVEMLGPFASKDNRAVPWKYEC
        DH IED  +F  EV KLMDAKIL++ Q+  +EIEV+MI+++S  +K S E +SI +PLVIHYEEK    S I+ PK M +E+ GPFA KDN A+PWKYE 
Subjt:  DHSIEDFIDFNKEVHKLMDAKILMISQIDPREIEVDMISNSSPYEKISKEGSSIREPLVIHYEEK----SNIEMPKTMIVEMLGPFASKDNRAVPWKYEC

Query:  QFITNNV----SGGMTRSGR--------------------------------YDLSEVFAEKATLVRRKTDDKSFPRKRSF----------------LLK
        QFI +NV     GG+TR  R                                 DLS+VF E+ TLV+++TD +   ++ ++                 +K
Subjt:  QFITNNV----SGGMTRSGR--------------------------------YDLSEVFAEKATLVRRKTDDKSFPRKRSF----------------LLK

Query:  AKYH--------GGQSFRWRSQGV--------------------------------------------------------ACLDDLGFIRQ-GAVPSSLH
         K H         G S    S+                                                          +CL    +I    AVP SLH
Subjt:  AKYH--------GGQSFRWRSQGV--------------------------------------------------------ACLDDLGFIRQ-GAVPSSLH

Query:  KKVKFNVEGGQAIVYGEEYMFVTKMSALPYVEAAEEAFECSYR
        ++VKF+VEGGQAIVYG E MFVTK S LPYVEA EEA E SYR
Subjt:  KKVKFNVEGGQAIVYGEEYMFVTKMSALPYVEAAEEAFECSYR

TrEMBL top hitse value%identityAlignment
A0A5A7TUT4 Uncharacterized protein3.1e-3733.17Show/hide
Query:  DDHSIEDFIDFNKEVHKLMDAKILMISQIDPREIEVDMISNSSPYEKISKEGSSIREPLVIHYEEKSN----IEMPKTMIVEMLGPFASKDNRAVPWKYE
        +DHSIED  +F  EV KLM++KIL+I Q+  +EIEV+MI+N+S  EK S E + + +PLVIHYEEKS+    I+ PK M VE+ GPFA KDN AVPWKYE
Subjt:  DDHSIEDFIDFNKEVHKLMDAKILMISQIDPREIEVDMISNSSPYEKISKEGSSIREPLVIHYEEKSN----IEMPKTMIVEMLGPFASKDNRAVPWKYE

Query:  CQFITNNV----SGGMTRSGR--------------------------------YDLSEVFAEKATLVRRKTDDK--------------------------
        CQFIT+NV     GG+TRSGR                                 DLS+VF EK TLV ++TD +                          
Subjt:  CQFITNNV----SGGMTRSGR--------------------------------YDLSEVFAEKATLVRRKTDDK--------------------------

Query:  --------------SFPRKRSFL---------------------------------------------------LKAKYH--------GGQSFRWRSQGV
                      S P ++  L                                                   +K K H         G S    S+  
Subjt:  --------------SFPRKRSFL---------------------------------------------------LKAKYH--------GGQSFRWRSQGV

Query:  --------------------------------------------------------ACLDDLGFIRQ-GAVPSSLHKKVKFNVEGGQAIVYGEEYMFVTK
                                                                +CL    +I   GAVPSSLH+++KF+VEGGQAIVYGEE MFVTK
Subjt:  --------------------------------------------------------ACLDDLGFIRQ-GAVPSSLHKKVKFNVEGGQAIVYGEEYMFVTK

Query:  MSALPYVEAAEEAFECSYR
         S LPYVEA EEA ECSYR
Subjt:  MSALPYVEAAEEAFECSYR

A0A5A7UA36 Reverse transcriptase domain-containing protein3.6e-3845.26Show/hide
Query:  REIEVDMISNSSPYEKISKEGSSIREPLVIHYEE----KSNIEMPKTMIVEMLGPFASKDNRAVPWKYECQFITNNVSG----GMTRSGR----------
        +E EV+MI+N+S  EK S E +S+ +PLVIHYEE     S I+ PK M VE+LGPFA KDN  VPWKYEC FIT+NV      G+TRSGR          
Subjt:  REIEVDMISNSSPYEKISKEGSSIREPLVIHYEE----KSNIEMPKTMIVEMLGPFASKDNRAVPWKYECQFITNNVSG----GMTRSGR----------

Query:  ----------------------YDLSEVFAEKATLVRRKTDDKSFPRKRSFLLKAKYHGGQSFRWRSQGVACLDDLGFIRQGAVPSSLHKKVKFNVEGGQ
                               DLS+VF EK TLV ++TD +   +++++                               AVPSSLH+++KF+VEGGQ
Subjt:  ----------------------YDLSEVFAEKATLVRRKTDDKSFPRKRSFLLKAKYHGGQSFRWRSQGVACLDDLGFIRQGAVPSSLHKKVKFNVEGGQ

Query:  AIVYGEEYMFVTKMSALPYVEAAEEAFECSYR
        AIVY EE MFVTK S LPYVEA EEA ECSYR
Subjt:  AIVYGEEYMFVTKMSALPYVEAAEEAFECSYR

A0A5A7V681 Retrotrans_gag domain-containing protein1.7e-3532.7Show/hide
Query:  DDHSIEDFIDFNKEVHKLMDAKILMISQIDPREIEVDMISNSSPYEKISKEGSSIREPLVIHYEEK----SNIEMPKTMIVEMLGPFASKDNRAVPWKYE
        +DHSIED  +F  EV KLMD+KIL+I Q+  +EIEV+MI+N+S  EK S E + + +P VIHYEEK    S I+ PK M VE+ GPFA KDN AVPWKYE
Subjt:  DDHSIEDFIDFNKEVHKLMDAKILMISQIDPREIEVDMISNSSPYEKISKEGSSIREPLVIHYEEK----SNIEMPKTMIVEMLGPFASKDNRAVPWKYE

Query:  CQFITNNV----SGGMTRSGR--------------------------------YDLSEVFAEKATLVRRKTDDK--------------------------
        CQFIT+NV     GG+TRSGR                                 DLS+VF +K TLV ++TD +                          
Subjt:  CQFITNNV----SGGMTRSGR--------------------------------YDLSEVFAEKATLVRRKTDDK--------------------------

Query:  --------------SFPRKRSFL---------------------------------------------------LKAKYH--------GGQSFRWRSQGV
                      S P ++  L                                                   +K K H         G S    S+  
Subjt:  --------------SFPRKRSFL---------------------------------------------------LKAKYH--------GGQSFRWRSQGV

Query:  --------------------------------------------------------ACLDDLGFIRQ-GAVPSSLHKKVKFNVEGGQAIVYGEEYMFVTK
                                                                +CL    +I   GAVPSSLH+++KF+VE GQAIVYGEE MFVTK
Subjt:  --------------------------------------------------------ACLDDLGFIRQ-GAVPSSLHKKVKFNVEGGQAIVYGEEYMFVTK

Query:  MSALPYVEAAEEAFECSYR
         S LPYVEA EEA ECSYR
Subjt:  MSALPYVEAAEEAFECSYR

A0A5D3C1I2 Gag-pro-like protein2.1e-4647.83Show/hide
Query:  MDDHSIEDFIDFNKEVHKLMDAKILMISQIDPREIEVDMISNSSPYEKISKEGSSIREPLVIHYEEKSNI----EMPKTMIVEMLGPFASKDNRAVPWKY
        ++DHSIED  +F  EV KLMDAKIL+I Q+  +EIEV+MI+N+S  EK S + +S+ +PLVIHYEEK +I    + PKTM VE+ GPFA KDN A+PWKY
Subjt:  MDDHSIEDFIDFNKEVHKLMDAKILMISQIDPREIEVDMISNSSPYEKISKEGSSIREPLVIHYEEKSNI----EMPKTMIVEMLGPFASKDNRAVPWKY

Query:  ECQFITNNV----SGGMTRSGR----YD-LSEVFAE--------------------------KATLVRRKTDDKSFPR------------KRSFLLK---
        ECQFIT+NV     GG+TRSGR    YD L + F+E                          KA  +  K  D    R             RS L+K   
Subjt:  ECQFITNNV----SGGMTRSGR----YD-LSEVFAE--------------------------KATLVRRKTDDKSFPR------------KRSFLLK---

Query:  -AKYHGGQSFRWRS-QGVACLDDLGFIRQGAVPSSLHKKVKFNVEGGQAIVYGEEYMFVTKMSALPYVEAAEEAFE
           Y    +   R+  G    DDLGFI+QG   S LHK++KF+V+GGQAIVYGEE MFVTK S LPYVEA EEA E
Subjt:  -AKYHGGQSFRWRS-QGVACLDDLGFIRQGAVPSSLHKKVKFNVEGGQAIVYGEEYMFVTKMSALPYVEAAEEAFE

A0A5D3CI23 Uncharacterized protein4.7e-3836.73Show/hide
Query:  DHSIEDFIDFNKEVHKLMDAKILMISQIDPREIEVDMISNSSPYEKISKEGSSIREPLVIHYEEK----SNIEMPKTMIVEMLGPFASKDNRAVPWKYEC
        DH IED  +F  EV KLMDAKIL++ Q+  +EIEV+MI+++S  +K S E +SI +PLVIHYEEK    S I+ PK M +E+ GPFA KDN A+PWKYE 
Subjt:  DHSIEDFIDFNKEVHKLMDAKILMISQIDPREIEVDMISNSSPYEKISKEGSSIREPLVIHYEEK----SNIEMPKTMIVEMLGPFASKDNRAVPWKYEC

Query:  QFITNNV----SGGMTRSGR--------------------------------YDLSEVFAEKATLVRRKTDDKSFPRKRSF----------------LLK
        QFI +NV     GG+TR  R                                 DLS+VF E+ TLV+++TD +   ++ ++                 +K
Subjt:  QFITNNV----SGGMTRSGR--------------------------------YDLSEVFAEKATLVRRKTDDKSFPRKRSF----------------LLK

Query:  AKYH--------GGQSFRWRSQGV--------------------------------------------------------ACLDDLGFIRQ-GAVPSSLH
         K H         G S    S+                                                          +CL    +I    AVP SLH
Subjt:  AKYH--------GGQSFRWRSQGV--------------------------------------------------------ACLDDLGFIRQ-GAVPSSLH

Query:  KKVKFNVEGGQAIVYGEEYMFVTKMSALPYVEAAEEAFECSYR
        ++VKF+VEGGQAIVYG E MFVTK S LPYVEA EEA E SYR
Subjt:  KKVKFNVEGGQAIVYGEEYMFVTKMSALPYVEAAEEAFECSYR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGACCATTCCATAGAAGATTTTATTGATTTTAATAAGGAAGTACATAAATTGATGGATGCAAAGATTCTAATGATAAGTCAAATAGACCCACGAGAGATCGAGGT
TGATATGATTTCCAATTCTTCACCTTACGAAAAAATCTCAAAGGAGGGATCATCTATACGAGAACCATTAGTTATTCATTATGAAGAAAAGTCCAATATCGAGATGCCAA
AGACAATGATTGTTGAGATGCTAGGTCCCTTTGCTTCTAAGGATAACCGAGCTGTACCGTGGAAATATGAATGTCAGTTCATCACAAATAATGTTTCTGGAGGGATGACT
CGTAGTGGAAGATACGATTTGAGCGAAGTCTTTGCTGAAAAGGCCACTCTAGTACGAAGGAAGACAGACGACAAGTCGTTTCCAAGGAAGAGATCTTTCCTACTTAAAGC
CAAGTACCATGGTGGTCAGAGCTTTCGATGGCGCTCGCAGGGAGTTGCTTGCTTGGACGACCTTGGATTCATTCGACAGGGGGCAGTCCCGTCTTCACTACACAAAAAGG
TAAAGTTTAATGTCGAAGGTGGTCAGGCCATTGTCTACGGAGAAGAGTACATGTTTGTAACAAAAATGTCAGCACTTCCTTATGTTGAAGCAGCTGAAGAAGCCTTTGAG
TGCTCGTACAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGACCATTCCATAGAAGATTTTATTGATTTTAATAAGGAAGTACATAAATTGATGGATGCAAAGATTCTAATGATAAGTCAAATAGACCCACGAGAGATCGAGGT
TGATATGATTTCCAATTCTTCACCTTACGAAAAAATCTCAAAGGAGGGATCATCTATACGAGAACCATTAGTTATTCATTATGAAGAAAAGTCCAATATCGAGATGCCAA
AGACAATGATTGTTGAGATGCTAGGTCCCTTTGCTTCTAAGGATAACCGAGCTGTACCGTGGAAATATGAATGTCAGTTCATCACAAATAATGTTTCTGGAGGGATGACT
CGTAGTGGAAGATACGATTTGAGCGAAGTCTTTGCTGAAAAGGCCACTCTAGTACGAAGGAAGACAGACGACAAGTCGTTTCCAAGGAAGAGATCTTTCCTACTTAAAGC
CAAGTACCATGGTGGTCAGAGCTTTCGATGGCGCTCGCAGGGAGTTGCTTGCTTGGACGACCTTGGATTCATTCGACAGGGGGCAGTCCCGTCTTCACTACACAAAAAGG
TAAAGTTTAATGTCGAAGGTGGTCAGGCCATTGTCTACGGAGAAGAGTACATGTTTGTAACAAAAATGTCAGCACTTCCTTATGTTGAAGCAGCTGAAGAAGCCTTTGAG
TGCTCGTACAGATAG
Protein sequenceShow/hide protein sequence
MDDHSIEDFIDFNKEVHKLMDAKILMISQIDPREIEVDMISNSSPYEKISKEGSSIREPLVIHYEEKSNIEMPKTMIVEMLGPFASKDNRAVPWKYECQFITNNVSGGMT
RSGRYDLSEVFAEKATLVRRKTDDKSFPRKRSFLLKAKYHGGQSFRWRSQGVACLDDLGFIRQGAVPSSLHKKVKFNVEGGQAIVYGEEYMFVTKMSALPYVEAAEEAFE
CSYR