CuGenDBv2

Gene ID	Lsi07G009750
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	50S ribosomal protein L20, chloroplastic
Genome location	chr07:12836320..12850539
RNA-Seq Expression	Lsi07G009750
Synteny	Lsi07G009750
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR005813 - Ribosomal protein L20 IPR035566 - Ribosomal protein L20, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

AHM89948.1 ribosomal protein L20 [Lagenaria siceraria]

1.7e-49

94.78

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Query:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI
        +IKRGYIARRRRTKIRLFASSFRGAHS LTRTITQQK RALASAYRDRGRQKRNFRQLW+ARINAVIRSNKVDY YSRFIHNLYKRQLLLN KILAQIAI
Subjt:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI

Query:  LNRNCLYMISNEIIK
        LNRNCLYMISNEIIK
Subjt:  LNRNCLYMISNEIIK

YP_004841806.1 ribosomal protein L20 [Cucumis melo subsp. melo]

4.4e-50

95.65

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Query:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI
        +IKRGYIARRRRTKIRLFASSFRGAHS LTRTITQQKIRALASAYRDRGRQKRNFRQLW+ARINAVIRSNKVDY YSRFIHNLYKRQLLLN KILAQIAI
Subjt:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI

Query:  LNRNCLYMISNEIIK
        LNRNCLYMISNEIIK
Subjt:  LNRNCLYMISNEIIK

YP_009004067.1 ribosomal protein L20 [Cucumis hystrix]

1.7e-49

94.78

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Query:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI
        +IKRGYIARRRRTKIRLFASSFRGAHS LTRTITQQKIRALASAYRDRGRQKRNFRQLW+ARINAVIRSN VDY YSRFIHNLYKRQLLLN KILAQIAI
Subjt:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI

Query:  LNRNCLYMISNEIIK
        LNRNCLYMISNEIIK
Subjt:  LNRNCLYMISNEIIK

YP_009317409.1 ribosomal protein L20 [Coccinia grandis]

4.4e-50

95.65

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Query:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI
        +IKRGYIARRRRTKIRLFASSFRGAHS LTRTITQQKIRALASAYRDRGRQKRNFRQLW+ARINAVIRSNKVDY YSRFIHNLYKRQLLLN KILAQIAI
Subjt:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI

Query:  LNRNCLYMISNEIIK
        LNRNCLYMISNEIIK
Subjt:  LNRNCLYMISNEIIK

YP_009326012.1 ribosomal protein L20 [Citrullus lanatus]

5.8e-50

94.78

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Query:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI
        +IKRGYIARRRRTKIRLFASSFRGAHS LTRTITQQKIRALASAYRDRGRQKRNFRQLW+ARINAVIRSNKVDY YSRF+HNLYKRQLLLN KILAQIAI
Subjt:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI

Query:  LNRNCLYMISNEIIK
        LNRNCLYMISNEIIK
Subjt:  LNRNCLYMISNEIIK

TrEMBL top hits

e value

%identity

Alignment

A0A1S4EU28 50S ribosomal protein L20, chloroplastic

2.1e-50

95.65

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Query:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI
        +IKRGYIARRRRTKIRLFASSFRGAHS LTRTITQQKIRALASAYRDRGRQKRNFRQLW+ARINAVIRSNKVDY YSRFIHNLYKRQLLLN KILAQIAI
Subjt:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI

Query:  LNRNCLYMISNEIIK
        LNRNCLYMISNEIIK
Subjt:  LNRNCLYMISNEIIK

A0A249RZK5 50S ribosomal protein L20, chloroplastic

2.1e-50

95.65

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Query:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI
        +IKRGYIARRRRTKIRLFASSFRGAHS LTRTITQQKIRALASAYRDRGRQKRNFRQLW+ARINAVIRSNKVDY YSRFIHNLYKRQLLLN KILAQIAI
Subjt:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI

Query:  LNRNCLYMISNEIIK
        LNRNCLYMISNEIIK
Subjt:  LNRNCLYMISNEIIK

A0A286NG26 50S ribosomal protein L20, chloroplastic

2.1e-50

95.65

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Query:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI
        +IKRGYIARRRRTKIRLFASSFRGAHS LTRTITQQKIRALASAYRDRGRQKRNFRQLW+ARINAVIRSNKVDY YSRFIHNLYKRQLLLN KILAQIAI
Subjt:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI

Query:  LNRNCLYMISNEIIK
        LNRNCLYMISNEIIK
Subjt:  LNRNCLYMISNEIIK

A0A2Z2CH93 50S ribosomal protein L20, chloroplastic

2.1e-50

95.65

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Query:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI
        +IKRGYIARRRRTKIRLFASSFRGAHS LTRTITQQKIRALASAYRDRGRQKRNFRQLW+ARINAVIRSNKVDY YSRFIHNLYKRQLLLN KILAQIAI
Subjt:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI

Query:  LNRNCLYMISNEIIK
        LNRNCLYMISNEIIK
Subjt:  LNRNCLYMISNEIIK

X2F1S9 50S ribosomal protein L20, chloroplastic

2.1e-50

95.65

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Query:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI
        +IKRGYIARRRRTKIRLFASSFRGAHS LTRTITQQKIRALASAYRDRGRQKRNFRQLW+ARINAVIRSNKVDY YSRFIHNLYKRQLLLN KILAQIAI
Subjt:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI

Query:  LNRNCLYMISNEIIK
        LNRNCLYMISNEIIK
Subjt:  LNRNCLYMISNEIIK

SwissProt top hits

e value

%identity

Alignment

B1NWH3 50S ribosomal protein L20, chloroplastic

1.7e-44

82.61

Show/hide

Query:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI
        +I+RGYIARRRRTKIRLFASSFRGAHS LTRTI QQKIRAL SA+RDR RQKRNFR+LW+ RINAVIR + V Y YSR I+NLYKRQLLLN KILAQIAI
Subjt:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI

Query:  LNRNCLYMISNEIIK
        LNRNCLYMISN+I+K
Subjt:  LNRNCLYMISNEIIK

Q09G23 50S ribosomal protein L20, chloroplastic

3.1e-46

84.35

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Query:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI
        +I+RGYIARRRRTKIRLFAS+FRGAHS LTRT TQQK+RAL SA+RDRGRQKRNFR+LW+ RINAVIR NKV Y YSR IH+LYKRQLLLN KILAQIAI
Subjt:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI

Query:  LNRNCLYMISNEIIK
         NRNCLYMISNEIIK
Subjt:  LNRNCLYMISNEIIK

Q09WZ4 50S ribosomal protein L20, chloroplastic

5.8e-45

83.48

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Query:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI
        +IKRGYIARRRRTKIRLFASSF+GA S LTRTITQQKIRAL SA++DRGRQKR+FR+LW+ RINAVIR+NKV Y YS  IH+LYKRQLLLN KILAQIAI
Subjt:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI

Query:  LNRNCLYMISNEIIK
        LNRNCLYMISNEI+K
Subjt:  LNRNCLYMISNEIIK

Q4VZJ4 50S ribosomal protein L20, chloroplastic

2.2e-52

94.78

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Query:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI
        +IKRGYIARRRRTKIRLFASSFRGAHS LTRTITQQKIRALASAYRDRGRQKRNFRQLW+ARINAVIRSN VDY YSRFIHNLYKRQLLLN KILAQIAI
Subjt:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI

Query:  LNRNCLYMISNEIIK
        LNRNCLYMISNEIIK
Subjt:  LNRNCLYMISNEIIK

Q7FNS5 50S ribosomal protein L20, chloroplastic

1.7e-44

83.48

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Query:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI
        +IKRGYIARRRRTKIRLFASSFRGAHS LTRTITQQKIRAL SA+RDR R+KR+FR+LW+ RINAVIR   V Y YSR IH+LYKRQLLLN KILAQIAI
Subjt:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI

Query:  LNRNCLYMISNEIIK
         NRNCLYMISNEIIK
Subjt:  LNRNCLYMISNEIIK

Arabidopsis top hits

e value

%identity

Alignment

AT1G16740.1 Ribosomal protein L20

1.5e-08

37.08

Show/hide

Query:  RTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI
        + +I   A  FRG   +  R   ++  +AL  +YRDR  +KR  R LW+ RINA  R + V+  Y  FIH L K  + LN K+L+++++
Subjt:  RTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI

ATCG00660.1 ribosomal protein L20

4.7e-42

75.65

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Query:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI
        +IKRGYIARRRRTK+RLFASSFRGAHS LTRT+TQQ+IRAL SA+RDRG++KR+FR+LW+ RINAVI    V Y Y+ FIHNLYK+QLLLN KILAQIA+
Subjt:  KIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAI

Query:  LNRNCLYMISNEIIK
        LNR+CLY ISN+I K
Subjt:  LNRNCLYMISNEIIK

Sequences

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CDS sequence

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ATGAAAATTAAACGAGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGTCTTACTCGAACTATTACTCAACA
GAAAATAAGAGCTTTGGCTTCGGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGCTCGCTCGAATAAATGCAGTAATTCGATCTAATAAGGTAG
ACTACATTTATAGTAGATTCATACACAATCTGTACAAGAGGCAGTTGCTTCTTAATCATAAAATACTTGCCCAAATCGCTATATTAAACAGAAATTGTCTTTATATGATT
TCCAATGAGATCATAAAATAA

mRNA sequence

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Protein sequence

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MKIKRGYIARRRRTKIRLFASSFRGAHSSLTRTITQQKIRALASAYRDRGRQKRNFRQLWLARINAVIRSNKVDYIYSRFIHNLYKRQLLLNHKILAQIAILNRNCLYMI
SNEIIK

Lsi07G009750 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome