CuGenDBv2

Gene ID	Lsi07G009760
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	50S ribosomal protein L33, chloroplastic
Genome location	chr07:12851294..12852240
RNA-Seq Expression	Lsi07G009760
Synteny	Lsi07G009760
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001705 - Ribosomal protein L33 IPR011332 - Zinc-binding ribosomal protein IPR018264 - Ribosomal protein L33, conserved site IPR038584 - Ribosomal protein L33 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AHM89011.1 ribosomal protein L33 [Lagenaria siceraria]

8.4e-28

92.42

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Query:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAKGKDARV VILECT CVR+GVNKESIG+S+YITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
Subjt:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

QJF46404.1 ribosomal protein L33 [Cucumis melo]

3.4e-29

92.65

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Query:  RFMAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        RFMAKGKDARV VILECT CVR+GVNKESIG+S+YITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
Subjt:  RFMAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

YP_004841804.1 ribosomal protein L33 [Cucumis melo subsp. melo]

6.5e-28

92.42

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Query:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAKGKDARV VILECT CVR+GVNKESIG+S+YITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
Subjt:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

YP_009447471.1 ribosomal protein L33 [Cucurbita maxima]

8.4e-28

90.91

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Query:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAKGKDARV VILECT CVR+GVNKES+G+S+YITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
Subjt:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

YP_009456167.1 ribosomal protein L33 [Lagenaria siceraria]

7.6e-29

93.94

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Query:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAKGKDARV VILECTHCVR+GVNKESIG+S+YITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
Subjt:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

TrEMBL top hits

e value

%identity

Alignment

A0A249RZI5 50S ribosomal protein L33, chloroplastic

3.1e-28

92.42

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Query:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAKGKDARV VILECT CVR+GVNKESIG+S+YITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
Subjt:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

A0A6M3W1I6 50S ribosomal protein L33, chloroplastic

1.7e-29

92.65

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Query:  RFMAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        RFMAKGKDARV VILECT CVR+GVNKESIG+S+YITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
Subjt:  RFMAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

A0A7G9IT58 50S ribosomal protein L33, chloroplastic

3.7e-29

93.94

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Query:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAKGKDARV VILECTHCVR+GVNKESIG+S+YITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
Subjt:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

G3ETR8 50S ribosomal protein L33, chloroplastic

3.1e-28

92.42

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Query:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAKGKDARV VILECT CVR+GVNKESIG+S+YITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
Subjt:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

X2F867 50S ribosomal protein L33, chloroplastic

3.7e-29

93.94

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Query:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAKGKDARV VILECTHCVR+GVNKESIG+S+YITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
Subjt:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

SwissProt top hits

e value

%identity

Alignment

A6MM57 50S ribosomal protein L33, chloroplastic

6.1e-29

87.88

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Query:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAKGKD RV VILECT CVR+GVNKES+G+S+YITQKNRHNTPSRLELRKFCP CYKHTIHGEIKK
Subjt:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

A6MME3 50S ribosomal protein L33, chloroplastic

5.1e-28

84.85

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Query:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAKGKD R IVILECT CVR+GVNKES G+S+YITQ+NRHNTP+RLELRKFCP CYKHTIHGEIKK
Subjt:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

B1A956 50S ribosomal protein L33, chloroplastic

3.6e-29

87.88

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Query:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAKGKDARV +ILECT CVR+GVNKES G+S+YITQKNRHNTPSRLELRKFCP CYKHTIHGEIKK
Subjt:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

Q2QD68 50S ribosomal protein L33, chloroplastic

1.9e-30

90.91

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Query:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAKGKDARV VILECT CVR+GVNK+SIG+S+YITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
Subjt:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

Q49KX8 50S ribosomal protein L33, chloroplastic

3.0e-28

87.88

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Query:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAKGKD RV VILECT+CVR G+NKES GVS+YITQKNRHNTPSRLELRKFCP CYKHTIHGEIKK
Subjt:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

Arabidopsis top hits

e value

%identity

Alignment

ATCG00640.1 ribosomal protein L33

6.9e-28

80.3

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Query:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK
        MAKGKD RV +ILECT CVR+ + KE+ G+S+YITQKNRHNTPSRLELRKFCP CYKHTIHGEIKK
Subjt:  MAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

Sequences

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CDS sequence

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ATGTATAGGAGGTTCATGGCCAAGGGTAAAGATGCCCGAGTAATAGTTATTTTGGAATGTACTCACTGTGTTCGACACGGTGTTAATAAGGAATCAATCGGGGTTTCTAA
ATATATTACTCAAAAGAATCGACACAATACGCCTAGTCGATTGGAATTGAGAAAATTCTGTCCCCGTTGTTACAAACATACGATTCATGGGGAGATAAAGAAATAG

mRNA sequence

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Protein sequence

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MYRRFMAKGKDARVIVILECTHCVRHGVNKESIGVSKYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

Lsi07G009760 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome