; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi07G009960 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi07G009960
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein RIK isoform X1
Genome locationchr07:13835836..13837796
RNA-Seq ExpressionLsi07G009960
SyntenyLsi07G009960
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR031121 - KH domain containing protein RIK/BLOM7


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581700.1 Protein RIK, partial [Cucurbita argyrosperma subsp. sororia]3.3e-7292.9Show/hide
Query:  MPEDSGVRVSSDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISIND
        M EDSGVRVS DEPIAVPNIDSSSQTKPRKKRKWDQPAESFLS   AVPGVLPSYN+TPLGGVAV SVAALAQVSSVNCAT+TQSKIQDELIAREISIND
Subjt:  MPEDSGVRVSSDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISIND

Query:  AEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV
        AEPSVRYKLTKRQTQEEIQR TGAVVITRGKYHPPNTPPDGNKPLYLHISAG H+
Subjt:  AEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV

KAG7018181.1 Protein RIK [Cucurbita argyrosperma subsp. argyrosperma]3.3e-7292.9Show/hide
Query:  MPEDSGVRVSSDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISIND
        M EDSGVRVS DEPIAVPNIDSSSQTKPRKKRKWDQPAESFLS   AVPGVLPSYN+TPLGGVAV SVAALAQVSSVNCAT+TQSKIQDELIAREISIND
Subjt:  MPEDSGVRVSSDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISIND

Query:  AEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV
        AEPSVRYKLTKRQTQEEIQR TGAVVITRGKYHPPNTPPDGNKPLYLHISAG H+
Subjt:  AEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV

XP_022955349.1 protein RIK isoform X2 [Cucurbita moschata]1.6e-7192.26Show/hide
Query:  MPEDSGVRVSSDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISIND
        M EDSGVRVS DEP AVPNIDSSSQTKPRKKRKWDQPAESFLS   AVPGVLPSYN+TPLGGVAV SVAALAQVSSVNCAT+TQSKIQDELIAREISIND
Subjt:  MPEDSGVRVSSDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISIND

Query:  AEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV
        AEPSVRYKLTKRQTQEEIQR TGAVVITRGKYHPPNTPPDGNKPLYLHISAG H+
Subjt:  AEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV

XP_038901396.1 protein RIK isoform X1 [Benincasa hispida]1.1e-7294.19Show/hide
Query:  MPEDSGVRVSSDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISIND
        M EDSGVRVSSDEPIAVPNID SSQTKPRKKRKWDQPAESFLS  TAVPGVLPSYNLTPLGGV V SV ALAQVSSVNCATLTQSKIQDELIAREISIND
Subjt:  MPEDSGVRVSSDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISIND

Query:  AEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV
        AEPSVRYKLTKRQTQEEIQR TGAVVITRGKYHPPNTPPDGNKPLYLHISAGAH+
Subjt:  AEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV

XP_038901413.1 protein RIK isoform X2 [Benincasa hispida]1.1e-7294.19Show/hide
Query:  MPEDSGVRVSSDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISIND
        M EDSGVRVSSDEPIAVPNID SSQTKPRKKRKWDQPAESFLS  TAVPGVLPSYNLTPLGGV V SV ALAQVSSVNCATLTQSKIQDELIAREISIND
Subjt:  MPEDSGVRVSSDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISIND

Query:  AEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV
        AEPSVRYKLTKRQTQEEIQR TGAVVITRGKYHPPNTPPDGNKPLYLHISAGAH+
Subjt:  AEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV

TrEMBL top hitse value%identityAlignment
A0A6J1GTP6 protein RIK isoform X17.9e-7292.26Show/hide
Query:  MPEDSGVRVSSDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISIND
        M EDSGVRVS DEP AVPNIDSSSQTKPRKKRKWDQPAESFLS   AVPGVLPSYN+TPLGGVAV SVAALAQVSSVNCAT+TQSKIQDELIAREISIND
Subjt:  MPEDSGVRVSSDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISIND

Query:  AEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV
        AEPSVRYKLTKRQTQEEIQR TGAVVITRGKYHPPNTPPDGNKPLYLHISAG H+
Subjt:  AEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV

A0A6J1GW04 protein RIK isoform X27.9e-7292.26Show/hide
Query:  MPEDSGVRVSSDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISIND
        M EDSGVRVS DEP AVPNIDSSSQTKPRKKRKWDQPAESFLS   AVPGVLPSYN+TPLGGVAV SVAALAQVSSVNCAT+TQSKIQDELIAREISIND
Subjt:  MPEDSGVRVSSDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISIND

Query:  AEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV
        AEPSVRYKLTKRQTQEEIQR TGAVVITRGKYHPPNTPPDGNKPLYLHISAG H+
Subjt:  AEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV

A0A6J1IRM9 protein RIK isoform X32.3e-7191.61Show/hide
Query:  MPEDSGVRVSSDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISIND
        M EDSG RVS DEPIAVPNIDSSSQTKPRKKRKWDQPAESFLS   AVPGVLPSYN+TPLGGVAV SVAALAQVSSVNCAT+TQ KIQDELIAREISIND
Subjt:  MPEDSGVRVSSDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISIND

Query:  AEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV
        AEPSVRYKLTKRQTQEEIQR TGAVVITRGKYHPPNTPPDGNKPLYLHISAG H+
Subjt:  AEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV

A0A6J1ITV8 protein RIK isoform X22.3e-7191.61Show/hide
Query:  MPEDSGVRVSSDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISIND
        M EDSG RVS DEPIAVPNIDSSSQTKPRKKRKWDQPAESFLS   AVPGVLPSYN+TPLGGVAV SVAALAQVSSVNCAT+TQ KIQDELIAREISIND
Subjt:  MPEDSGVRVSSDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISIND

Query:  AEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV
        AEPSVRYKLTKRQTQEEIQR TGAVVITRGKYHPPNTPPDGNKPLYLHISAG H+
Subjt:  AEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV

A0A6J1IWQ3 protein RIK isoform X12.3e-7191.61Show/hide
Query:  MPEDSGVRVSSDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISIND
        M EDSG RVS DEPIAVPNIDSSSQTKPRKKRKWDQPAESFLS   AVPGVLPSYN+TPLGGVAV SVAALAQVSSVNCAT+TQ KIQDELIAREISIND
Subjt:  MPEDSGVRVSSDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISIND

Query:  AEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV
        AEPSVRYKLTKRQTQEEIQR TGAVVITRGKYHPPNTPPDGNKPLYLHISAG H+
Subjt:  AEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV

SwissProt top hitse value%identityAlignment
A0JM64 KH homology domain-containing protein 44.5e-0829.88Show/hide
Query:  KKRKWDQPAESFLSKSTAVPGVLPSY------------NLTPL----GGVAVPS---VAALAQVSSVNCATLTQSKI----------------------Q
        ++ KWDQP     S +  +PGVLP+              + P+      V+ PS    AA A  + +N   + + KI                      +
Subjt:  KKRKWDQPAESFLSKSTAVPGVLPSY------------NLTPL----GGVAVPS---VAALAQVSSVNCATLTQSKI----------------------Q

Query:  DELIAREISINDAEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPP---DGNKPLYLHI
        D+L+  E+ IND   + R  LT+ QTQ+EI R++GA V TRG+Y           G++PLYLH+
Subjt:  DELIAREISINDAEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPP---DGNKPLYLHI

Q32SG5 Protein RIK4.8e-3449.44Show/hide
Query:  MPEDSGVRVSSDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSKSTAVPGV--LPSYNLTPLGGVAVPSVAA-----------------------LAQVS
        M ED   +V +DEP A     S  Q+  RKKRKWDQPAE  +S +     V  +P  N   L GV +P V A                       + Q +
Subjt:  MPEDSGVRVSSDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSKSTAVPGV--LPSYNLTPLGGVAVPSVAA-----------------------LAQVS

Query:  SVNCATLTQSKIQDELIAREISINDAEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV
        +     L+Q+KI DE+IAREI INDA+PSVRYKLTKRQTQEEIQ+ T  V+ITRGKYHPPN  PDG KPLYLHISAG+ +
Subjt:  SVNCATLTQSKIQDELIAREISINDAEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV

Q3TCX3 KH homology domain-containing protein 41.6e-0831.52Show/hide
Query:  IDSSSQTKPR---KKRKWDQPAES--FLSKSTAVPGVLPSYNLTPLGG--VAVPS---VAALAQVSSVNC----------------------ATLTQSKI
        + + S T P    ++ KWDQPA +       TA  G +     +P G    A PS    AA A  + +N                        +LT +K 
Subjt:  IDSSSQTKPR---KKRKWDQPAES--FLSKSTAVPGVLPSYNLTPLGG--VAVPS---VAALAQVSSVNC----------------------ATLTQSKI

Query:  QDELIAREISINDAEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPP---DGNKPLYLHI
        +D+L+  E+ IND   + R  LT+ QTQ+EI RL+GA V TRG++           G++PLYLH+
Subjt:  QDELIAREISINDAEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPP---DGNKPLYLHI

Q7Z7F0 KH homology domain-containing protein 41.4e-0934Show/hide
Query:  KKRKWDQPAES-FLSKSTAVP-GVLPSYNLTPLGGVAVPS---VAALAQVSSVNCAT----------------------LTQSKIQDELIAREISINDAE
        ++ KWDQPA +  L    A P G + S   +P G  A PS    AA A  + +N                         LT +K +D+L+  E+ IND  
Subjt:  KKRKWDQPAES-FLSKSTAVP-GVLPSYNLTPLGGVAVPS---VAALAQVSSVNCAT----------------------LTQSKIQDELIAREISINDAE

Query:  PSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPP---DGNKPLYLHI
         + R  LT+ QTQ+EI RL+GA V TRG++           G++PLYLH+
Subjt:  PSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPPNTPP---DGNKPLYLHI

Q9LIA4 Protein RIK1.8e-3357.82Show/hide
Query:  VPNIDSS-----SQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCAT--LTQSKIQDE-LIAREISINDAEPSVRYK
        VP  DSS     S+T+ R+KRKWD+PAE  ++   A P +LP  N      + VPS++ L Q  SV  A   + Q KIQDE +IAREI INDAE S+R++
Subjt:  VPNIDSS-----SQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCAT--LTQSKIQDE-LIAREISINDAEPSVRYK

Query:  LTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV
        LTKR TQE+IQR TGAVVITRGKY PPN PPDG KPLYLHISA A +
Subjt:  LTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV

Arabidopsis top hitse value%identityAlignment
AT1G20920.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein2.0e-0631.58Show/hide
Query:  AVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISINDAEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPP-NTPPDGNKPL
        A+PGVLP    T     A  + A +A ++  +     Q+    E    E+ IND   + R+K+T ++T   I   TGA + TRG+++P    P  G + L
Subjt:  AVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISINDAEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPP-NTPPDGNKPL

Query:  YLHISAGAHVSRIH
        YL I   +  S  H
Subjt:  YLHISAGAHVSRIH

AT1G20920.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein2.0e-0631.58Show/hide
Query:  AVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISINDAEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPP-NTPPDGNKPL
        A+PGVLP    T     A  + A +A ++  +     Q+    E    E+ IND   + R+K+T ++T   I   TGA + TRG+++P    P  G + L
Subjt:  AVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISINDAEPSVRYKLTKRQTQEEIQRLTGAVVITRGKYHPP-NTPPDGNKPL

Query:  YLHISAGAHVSRIH
        YL I   +  S  H
Subjt:  YLHISAGAHVSRIH

AT3G29390.1 RS2-interacting KH protein1.3e-3457.82Show/hide
Query:  VPNIDSS-----SQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCAT--LTQSKIQDE-LIAREISINDAEPSVRYK
        VP  DSS     S+T+ R+KRKWD+PAE  ++   A P +LP  N      + VPS++ L Q  SV  A   + Q KIQDE +IAREI INDAE S+R++
Subjt:  VPNIDSS-----SQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCAT--LTQSKIQDE-LIAREISINDAEPSVRYK

Query:  LTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV
        LTKR TQE+IQR TGAVVITRGKY PPN PPDG KPLYLHISA A +
Subjt:  LTKRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGGAGGACAGTGGCGTTAGGGTTTCCTCTGACGAACCCATCGCAGTTCCGAATATCGATTCCTCTTCTCAAACAAAGCCAAGAAAGAAACGAAAGTGGGATCAACC
TGCGGAGTCCTTTCTTTCTAAAAGTACTGCAGTTCCAGGGGTTCTCCCATCATACAACCTGACGCCCCTTGGTGGGGTTGCTGTTCCCAGTGTGGCGGCGCTGGCACAAG
TTTCTTCAGTTAACTGTGCAACCTTAACCCAGTCAAAGATTCAAGATGAGTTAATAGCAAGAGAAATATCAATAAATGATGCAGAGCCTTCTGTGCGGTACAAGCTCACA
AAGCGTCAGACACAGGAGGAGATTCAAAGACTCACTGGTGCCGTGGTGATAACTAGGGGCAAGTATCATCCTCCAAACACGCCTCCGGATGGTAACAAGCCACTTTATCT
TCACATCTCTGCAGGAGCCCATGTAAGTAGGATTCACTAA
mRNA sequenceShow/hide mRNA sequence
ATCAAACCCGTTTTCAAGACCAAGAATTCCCCTTTCTAATTCTTCTTCTTCTTCTTATTATTATTTATCATTTTAATCCCTTGTAGTGGGGCGAAATTGCCTCCGTGCCT
GTGCACATCAGCCAAAAAGCCGGTGCCCGCCGTGAGCACACTGTTGTTTTCATCTCCGAGCAACTGAACGGCGACGTTGCGCTCTGCACCATCCTCATCATCACGCTTCT
GATTTCGACCTCTGAAGAATAAGAAGAAGCTTTTCTCGTTTACATATGCCGGAGGACAGTGGCGTTAGGGTTTCCTCTGACGAACCCATCGCAGTTCCGAATATCGATTC
CTCTTCTCAAACAAAGCCAAGAAAGAAACGAAAGTGGGATCAACCTGCGGAGTCCTTTCTTTCTAAAAGTACTGCAGTTCCAGGGGTTCTCCCATCATACAACCTGACGC
CCCTTGGTGGGGTTGCTGTTCCCAGTGTGGCGGCGCTGGCACAAGTTTCTTCAGTTAACTGTGCAACCTTAACCCAGTCAAAGATTCAAGATGAGTTAATAGCAAGAGAA
ATATCAATAAATGATGCAGAGCCTTCTGTGCGGTACAAGCTCACAAAGCGTCAGACACAGGAGGAGATTCAAAGACTCACTGGTGCCGTGGTGATAACTAGGGGCAAGTA
TCATCCTCCAAACACGCCTCCGGATGGTAACAAGCCACTTTATCTTCACATCTCTGCAGGAGCCCATGTAAGTAGGATTCACTAA
Protein sequenceShow/hide protein sequence
MPEDSGVRVSSDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSKSTAVPGVLPSYNLTPLGGVAVPSVAALAQVSSVNCATLTQSKIQDELIAREISINDAEPSVRYKLT
KRQTQEEIQRLTGAVVITRGKYHPPNTPPDGNKPLYLHISAGAHVSRIH